Wall clock time and date at job start Tue Mar 31 2020 18:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34224 * 125.77162 * 2 1 4 4 N 1.39127 * 107.11418 * 180.02562 * 3 2 1 5 5 C 1.36228 * 139.29458 * 180.37077 * 4 3 2 6 6 C 1.33013 * 116.10852 * 180.11178 * 5 4 3 7 7 C 1.46874 * 125.22741 * 179.78549 * 6 5 4 8 8 O 1.21667 * 119.99661 * 359.71985 * 7 6 5 9 9 N 1.34773 * 120.00113 * 179.72458 * 7 6 5 10 10 C 1.47025 * 125.64537 * 359.96716 * 9 7 6 11 11 C 1.54330 * 107.26887 * 178.97796 * 10 9 7 12 12 C 1.55155 * 102.94325 * 337.81091 * 11 10 9 13 13 H 1.09004 * 111.00411 * 277.38931 * 12 11 10 14 14 N 1.46490 * 111.00570 * 153.57545 * 12 11 10 15 15 C 1.46503 * 120.00147 * 303.18067 * 14 12 11 16 16 C 1.36940 * 120.00078 * 123.45356 * 14 12 11 17 17 H 1.07991 * 119.99916 * 23.21333 * 16 14 12 18 18 C 1.38815 * 119.99824 * 203.21330 * 16 14 12 19 19 N 1.31616 * 120.00450 * 14.40335 * 18 16 14 20 20 Si 1.86802 * 119.99672 * 194.40326 * 18 16 14 21 21 H 1.48498 * 109.47136 * 90.00164 * 20 18 16 22 22 H 1.48499 * 109.46967 * 210.00009 * 20 18 16 23 23 H 1.48499 * 109.47335 * 329.99721 * 20 18 16 24 24 C 1.47469 * 125.63269 * 179.97438 * 9 7 6 25 25 S 1.75800 * 109.54574 * 359.51894 * 6 5 4 26 26 C 1.35441 * 106.45666 * 359.97438 * 4 3 2 27 27 N 1.32276 * 108.78084 * 0.02562 * 26 4 3 28 28 H 1.09003 * 109.47352 * 269.98551 * 1 2 3 29 29 H 1.08997 * 109.46868 * 29.98303 * 1 2 3 30 30 H 1.09000 * 109.47235 * 149.98502 * 1 2 3 31 31 H 1.08002 * 126.44167 * 0.03354 * 3 2 1 32 32 H 1.08007 * 121.94949 * 359.92072 * 5 4 3 33 33 H 1.09005 * 109.88265 * 59.56588 * 10 9 7 34 34 H 1.08999 * 110.01715 * 298.46988 * 10 9 7 35 35 H 1.09004 * 110.71906 * 219.44592 * 11 10 9 36 36 H 1.08998 * 110.86681 * 96.24468 * 11 10 9 37 37 H 1.09000 * 109.47145 * 95.18538 * 15 14 12 38 38 H 1.08995 * 109.47326 * 215.18446 * 15 14 12 39 39 H 1.09002 * 109.46606 * 335.18452 * 15 14 12 40 40 H 0.96995 * 120.00366 * 179.97438 * 19 18 16 41 41 H 1.08994 * 110.34884 * 85.24550 * 24 9 7 42 42 H 1.09005 * 110.39707 * 322.90814 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.0890 0.0000 4 7 3.6097 0.6440 -0.0006 5 6 4.8724 1.1553 0.0048 6 6 5.8633 0.2680 -0.0015 7 6 7.2948 0.5967 -0.0019 8 8 7.6519 1.7597 -0.0013 9 7 8.2128 -0.3901 -0.0030 10 6 7.9216 -1.8312 -0.0032 11 6 9.2751 -2.5721 -0.0310 12 6 10.2416 -1.5085 -0.6158 13 1 10.1858 -1.4863 -1.7041 14 7 11.6161 -1.7453 -0.1680 15 6 11.9213 -1.7979 1.2640 16 6 12.6168 -1.9120 -1.0878 17 1 12.5047 -1.5144 -2.0856 18 6 13.7751 -2.5922 -0.7377 19 7 13.8069 -3.3156 0.3614 20 14 15.2889 -2.4807 -1.8265 21 1 16.1274 -1.3344 -1.3926 22 1 16.0724 -3.7372 -1.7151 23 1 14.8704 -2.2818 -3.2373 24 6 9.6755 -0.2028 -0.0041 25 16 5.1963 -1.3585 -0.0016 26 6 3.5577 -0.7095 -0.0003 27 7 2.2900 -1.0869 -0.0002 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9617 2.1174 0.0005 32 1 5.0581 2.2193 0.0107 33 1 7.3384 -2.0915 -0.8867 34 1 7.3699 -2.1006 0.8974 35 1 9.2235 -3.4454 -0.6813 36 1 9.5810 -2.8596 0.9749 37 1 11.9127 -2.8349 1.5995 38 1 12.9065 -1.3667 1.4415 39 1 11.1717 -1.2310 1.8162 40 1 14.6161 -3.7911 0.6058 41 1 10.0415 -0.0710 1.0141 42 1 9.9483 0.6541 -0.6201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971678708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:25 Heat of formation + Delta-G solvation = 81.297658 kcal Electronic energy + Delta-G solvation = -25746.047672 eV Core-core repulsion = 22047.757707 eV Total energy + Delta-G solvation = -3698.289964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.81266 -41.31772 -39.16835 -37.64161 -36.63608 -33.62350 -32.49703 -32.03063 -31.35795 -29.79489 -28.08177 -27.93294 -26.12873 -24.98764 -23.97925 -22.64129 -21.92726 -21.00106 -19.86618 -19.74119 -18.95513 -18.06936 -17.70252 -17.30736 -17.00823 -16.81693 -16.45326 -15.75970 -15.59630 -15.12068 -14.97528 -14.62890 -14.47163 -14.32406 -14.21795 -14.06739 -13.80143 -13.57359 -13.16501 -13.11842 -12.85031 -12.72097 -12.54039 -12.40909 -12.20901 -12.13040 -12.08357 -11.83824 -11.72533 -11.50041 -11.39646 -11.31689 -10.64049 -10.04710 -9.75076 -8.81920 -8.76930 -7.83335 -5.32456 -0.70081 -0.28737 0.36668 0.83349 1.15487 1.48717 1.50821 1.58311 1.67029 1.82330 1.82884 2.51716 3.10633 3.28248 3.36770 3.46057 3.53122 3.83439 3.89129 4.02410 4.07152 4.16789 4.23638 4.31939 4.35681 4.53807 4.69449 4.80877 4.85084 4.86574 4.87720 4.96169 5.00676 5.03572 5.18732 5.29137 5.38747 5.46618 5.66640 5.69277 5.73169 6.22888 6.32264 6.57117 6.74710 7.14161 7.83961 8.27590 9.19352 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.002343 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.530131 B =11948.191510 C =12304.252665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.029 3.971 3 C -0.051 4.051 4 N -0.409 5.409 5 C 0.143 3.857 6 C -0.261 4.261 7 C 0.614 3.386 8 O -0.561 6.561 9 N -0.603 5.603 10 C 0.090 3.910 11 C -0.134 4.134 12 C 0.167 3.833 13 H 0.080 0.920 14 N -0.599 5.599 15 C 0.173 3.827 16 C -0.266 4.266 17 H 0.072 0.928 18 C -0.047 4.047 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.268 1.268 24 C 0.099 3.901 25 S 0.253 5.747 26 C 0.101 3.899 27 N -0.488 5.488 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.224 0.776 32 H 0.214 0.786 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.033 0.967 40 H 0.249 0.751 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 7.130 0.116 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C -0.181 4.181 4 N -0.088 5.088 5 C 0.007 3.993 6 C -0.383 4.383 7 C 0.402 3.598 8 O -0.442 6.442 9 N -0.334 5.334 10 C -0.034 4.034 11 C -0.174 4.174 12 C 0.057 3.943 13 H 0.098 0.902 14 N -0.320 5.320 15 C 0.028 3.972 16 C -0.396 4.396 17 H 0.090 0.910 18 C -0.243 4.243 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.193 1.193 24 C -0.025 4.025 25 S 0.505 5.495 26 C -0.263 4.263 27 N -0.214 5.214 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.240 0.760 32 H 0.230 0.770 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.435 5.632 0.177 25.077 hybrid contribution 1.007 1.877 -0.260 2.146 sum -23.429 7.509 -0.083 24.603 Atomic orbital electron populations 1.20260 0.83825 1.04426 1.03895 1.21585 0.98564 0.87222 1.02588 1.23338 0.77589 1.02743 1.14400 1.43846 1.06371 1.07760 1.50818 1.20757 0.79752 1.02221 0.96587 1.23163 0.96953 0.98492 1.19740 1.16265 0.82807 0.84080 0.76686 1.90835 1.81029 1.19384 1.52935 1.48233 1.07012 1.07023 1.71172 1.22277 0.98786 0.78769 1.03581 1.23042 0.92342 0.99087 1.02924 1.21544 0.83793 0.91316 0.97608 0.90209 1.43942 1.02615 1.82879 1.02549 1.20564 0.96058 0.97614 0.82946 1.19510 0.96098 1.28898 0.95092 0.90986 1.25722 1.02026 0.97291 0.99237 1.70201 1.27606 1.32854 1.27096 0.85295 0.79864 0.76385 0.79040 1.21644 1.22257 1.19288 1.22772 0.77565 1.00476 1.01668 1.85165 0.84035 0.99811 1.80482 1.27512 1.02054 0.85369 1.11411 1.70502 0.97294 1.31242 1.22348 0.89627 0.87970 0.91070 0.75985 0.76988 0.88851 0.88993 0.89171 0.90942 0.96839 0.96857 0.94874 0.94202 0.91374 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.41 71.23 0.74 0.05 16 2 C 0.03 0.55 7.05 41.32 0.29 0.84 16 3 C -0.05 -0.82 11.92 82.62 0.99 0.17 16 4 N -0.41 -8.41 3.14 -354.86 -1.12 -9.52 16 5 C 0.14 2.81 10.94 82.85 0.91 3.72 16 6 C -0.26 -5.94 6.27 23.37 0.15 -5.80 16 7 C 0.61 17.45 7.82 86.50 0.68 18.13 16 8 O -0.56 -19.20 17.01 -4.24 -0.07 -19.27 16 9 N -0.60 -17.07 3.33 -816.15 -2.72 -19.78 16 10 C 0.09 2.12 5.17 86.73 0.45 2.57 16 11 C -0.13 -3.95 6.53 31.78 0.21 -3.75 16 12 C 0.17 6.05 3.54 46.38 0.16 6.21 16 13 H 0.08 2.92 7.95 -2.39 -0.02 2.90 16 14 N -0.60 -27.78 2.95 -695.05 -2.05 -29.83 16 15 C 0.17 7.99 7.74 127.77 0.99 8.98 16 16 C -0.27 -13.83 9.60 84.03 0.81 -13.02 16 17 H 0.07 3.64 7.86 -2.91 -0.02 3.62 16 18 C -0.05 -2.52 5.07 84.86 0.43 -2.09 16 19 N -0.93 -52.89 10.82 21.65 0.23 -52.65 16 20 Si 0.97 43.74 29.58 68.60 2.03 45.77 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 C 0.10 3.32 6.45 86.85 0.56 3.88 16 25 S 0.25 5.26 18.66 -56.49 -1.05 4.21 16 26 C 0.10 2.44 8.92 179.61 1.60 4.04 16 27 N -0.49 -12.52 11.32 -184.69 -2.09 -14.61 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.22 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.21 3.25 7.97 -2.91 -0.02 3.23 16 33 H 0.09 1.88 6.82 -2.38 -0.02 1.87 16 34 H 0.09 1.87 6.97 -2.39 -0.02 1.85 16 35 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.07 2.31 7.21 -2.39 -0.02 2.29 16 37 H 0.01 0.67 7.34 -2.39 -0.02 0.66 16 38 H 0.01 0.66 7.40 -2.39 -0.02 0.64 16 39 H 0.03 1.30 6.15 -2.39 -0.01 1.29 16 40 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.07 2.38 6.14 -2.39 -0.01 2.36 16 42 H 0.07 2.42 8.04 -2.38 -0.02 2.40 16 Total: -1.00 -68.82 354.35 3.17 -65.65 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.05 Total: 6.12 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 8.96 Total: 23.93 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -7.74 Total: -126.40 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.07 Total: -19.27 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.05 Total: 4.21 kcal Total: -68.82 3.17 -65.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971678708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.951 kcal (2) G-P(sol) polarization free energy of solvation -68.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds