Wall clock time and date at job start Tue Mar 31 2020 19:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33010 * 121.94794 * 2 1 4 4 C 1.46879 * 125.22469 * 359.97425 * 3 2 1 5 5 O 1.21667 * 119.99722 * 4.90676 * 4 3 2 6 6 N 1.34777 * 120.00048 * 184.90298 * 4 3 2 7 7 C 1.46495 * 119.99871 * 354.42562 * 6 4 3 8 8 C 1.46498 * 120.00025 * 174.42496 * 6 4 3 9 9 C 1.52996 * 109.47209 * 275.90528 * 8 6 4 10 10 H 1.09001 * 112.96973 * 48.46122 * 9 8 6 11 11 C 1.53942 * 113.77286 * 180.14370 * 9 8 6 12 12 C 1.53949 * 86.29326 * 137.90470 * 11 9 8 13 13 N 1.47582 * 86.23855 * 336.33986 * 12 11 9 14 14 C 1.36935 * 134.49260 * 204.69556 * 13 12 11 15 15 H 1.07995 * 120.00551 * 185.16271 * 14 13 12 16 16 C 1.38814 * 119.99999 * 5.16583 * 14 13 12 17 17 N 1.31622 * 119.99735 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00438 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46854 * 89.99870 * 18 16 14 20 20 H 1.48490 * 109.47528 * 209.99832 * 18 16 14 21 21 H 1.48501 * 109.46964 * 330.00419 * 18 16 14 22 22 S 1.75793 * 109.54966 * 180.24456 * 3 2 1 23 23 C 1.76253 * 90.68674 * 359.65859 * 22 3 2 24 24 N 1.32274 * 141.81274 * 179.97438 * 23 22 3 25 25 C 1.33950 * 109.18572 * 180.39694 * 24 23 22 26 26 C 1.34220 * 108.46486 * 0.02562 * 25 24 23 27 27 N 1.35443 * 109.40591 * 0.34006 * 23 22 3 28 28 H 1.09000 * 109.47014 * 90.02387 * 1 2 3 29 29 H 1.08996 * 109.47130 * 210.02782 * 1 2 3 30 30 H 1.08994 * 109.46982 * 330.02749 * 1 2 3 31 31 H 1.09003 * 109.47344 * 184.81028 * 7 6 4 32 32 H 1.09001 * 109.47222 * 304.81387 * 7 6 4 33 33 H 1.08998 * 109.47200 * 64.81283 * 7 6 4 34 34 H 1.08992 * 109.46970 * 155.90053 * 8 6 4 35 35 H 1.09000 * 109.46885 * 35.89863 * 8 6 4 36 36 H 1.09007 * 113.74108 * 23.56083 * 11 9 8 37 37 H 1.09002 * 113.84317 * 252.26411 * 11 9 8 38 38 H 1.08993 * 113.76578 * 90.69751 * 12 11 9 39 39 H 1.08998 * 113.76973 * 221.98543 * 12 11 9 40 40 H 0.97005 * 119.99625 * 179.97438 * 17 16 14 41 41 H 1.08002 * 125.76516 * 179.97438 * 25 24 23 42 42 H 1.08005 * 126.44066 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2108 1.1286 0.0000 4 6 1.6410 2.4824 -0.0005 5 8 0.4374 2.6357 0.0891 6 7 2.4514 3.5546 -0.1002 7 6 3.9056 3.3776 -0.0850 8 6 1.8782 4.8971 -0.2238 9 6 1.5409 5.1747 -1.6901 10 1 0.9840 4.3637 -2.1594 11 6 0.9325 6.5675 -1.9340 12 6 1.8392 6.6361 -3.1763 13 7 2.6932 5.6490 -2.4875 14 6 4.0183 5.3112 -2.5583 15 1 4.3933 4.4736 -1.9890 16 6 4.8798 6.0454 -3.3620 17 7 4.4229 7.0665 -4.0554 18 14 6.6876 5.5850 -3.4582 19 1 6.8919 4.6088 -4.5585 20 1 7.4953 6.8030 -3.7208 21 1 7.1126 4.9770 -2.1718 22 16 3.9277 0.7512 -0.0071 23 6 3.5700 -0.9746 0.0008 24 7 4.1597 -2.1586 0.0018 25 6 3.2236 -3.1167 0.0013 26 6 2.0159 -2.5310 -0.0005 27 7 2.2278 -1.1560 0.0005 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3905 4.3538 -0.0891 32 1 4.1958 2.8314 0.8125 33 1 4.2125 2.8159 -0.9673 34 1 2.5996 5.6341 0.1289 35 1 0.9704 4.9612 0.3761 36 1 1.1855 7.2977 -1.1652 37 1 -0.1319 6.5486 -2.1682 38 1 1.3709 6.2547 -4.0835 39 1 2.3161 7.6058 -3.3192 40 1 5.0250 7.5798 -4.6167 41 1 3.4092 -4.1806 0.0015 42 1 1.0595 -3.0328 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:31 Heat of formation + Delta-G solvation = 135.654109 kcal Electronic energy + Delta-G solvation = -26871.127803 eV Core-core repulsion = 23175.194911 eV Total energy + Delta-G solvation = -3695.932892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.82558 -40.04680 -37.97633 -36.80110 -35.31768 -32.30097 -31.36549 -30.33675 -29.39100 -28.19974 -27.58061 -26.34973 -23.92523 -23.35603 -23.01447 -21.82913 -20.51905 -19.21016 -18.86344 -18.51352 -17.10449 -16.81804 -16.44599 -16.17477 -15.38355 -15.24565 -14.94349 -14.61188 -14.38981 -13.98347 -13.77110 -13.65988 -13.34099 -13.24265 -13.12049 -12.97123 -12.84188 -12.09304 -11.58473 -11.55316 -11.42734 -11.17432 -11.03012 -11.00915 -10.73239 -10.61435 -10.53535 -10.36512 -10.09618 -9.78780 -9.71285 -9.46076 -9.07031 -8.80200 -8.48950 -7.68387 -6.88300 -5.78567 -3.11824 0.37637 0.84253 1.44842 1.87114 2.22278 2.72530 2.99719 3.15078 3.34118 3.38295 3.42438 4.17138 4.38738 4.39164 4.51588 4.78434 4.96878 5.07940 5.14175 5.16795 5.31537 5.40128 5.40695 5.47018 5.63526 5.74041 5.80865 5.86151 5.92710 5.96679 6.00693 6.17835 6.30294 6.39022 6.50642 6.61847 6.67142 6.82179 7.23159 7.35584 7.47398 7.53435 7.58530 7.97178 8.08446 9.00429 9.68792 10.60690 11.37333 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.004087 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.261754 B = 6848.926911 C = 8317.890501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.157 3.843 3 C -0.257 4.257 4 C 0.598 3.402 5 O -0.528 6.528 6 N -0.587 5.587 7 C 0.057 3.943 8 C 0.120 3.880 9 C 0.127 3.873 10 H 0.047 0.953 11 C -0.156 4.156 12 C 0.153 3.847 13 N -0.603 5.603 14 C -0.228 4.228 15 H 0.084 0.916 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.901 3.099 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.279 1.279 22 S 0.237 5.763 23 C 0.119 3.881 24 N -0.464 5.464 25 C 0.020 3.980 26 C -0.062 4.062 27 N -0.403 5.403 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.186 0.814 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 -12.855 10.554 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.040 3.960 3 C -0.379 4.379 4 C 0.384 3.616 5 O -0.407 6.407 6 N -0.317 5.317 7 C -0.089 4.089 8 C -0.002 4.002 9 C 0.019 3.981 10 H 0.064 0.936 11 C -0.195 4.195 12 C 0.028 3.972 13 N -0.329 5.329 14 C -0.355 4.355 15 H 0.102 0.898 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.731 3.269 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.204 1.204 22 S 0.491 5.509 23 C -0.245 4.245 24 N -0.187 5.187 25 C -0.128 4.128 26 C -0.193 4.193 27 N -0.082 5.082 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.982 -12.124 10.484 16.785 hybrid contribution -0.817 -1.382 -0.480 1.676 sum -5.799 -13.506 10.004 17.780 Atomic orbital electron populations 1.21090 0.85371 1.05765 1.04721 1.19188 0.96377 0.82432 0.97991 1.23278 0.97591 0.97478 1.19512 1.16459 0.86006 0.81851 0.77251 1.90721 1.13496 1.85084 1.51400 1.47539 1.06478 1.07084 1.70587 1.22113 0.80448 1.04919 1.01375 1.22102 0.99129 0.80469 0.98523 1.22692 0.89582 0.95176 0.90666 0.93563 1.23743 0.97879 0.96842 1.01072 1.22263 0.87950 0.95733 0.91242 1.46195 1.02506 1.41090 1.43109 1.19186 0.81677 1.10892 1.23749 0.89848 1.24778 0.97784 0.97974 0.99738 1.69816 1.33894 1.20638 1.32006 0.86295 0.85171 0.77416 0.77970 1.21643 1.21613 1.20425 1.85738 1.00120 0.84626 1.80399 1.27832 0.83130 1.03895 1.09595 1.70638 1.31523 0.95011 1.21554 1.22452 0.87645 0.99400 1.03350 1.22813 1.01921 0.78754 1.15851 1.43714 1.07570 1.05995 1.50931 0.89318 0.91184 0.85904 0.86359 0.91784 0.90536 0.89142 0.90120 0.90624 0.92970 0.96127 0.90331 0.93714 0.79731 0.80057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.56 36.01 0.34 -0.86 16 2 C 0.16 2.09 6.79 -82.45 -0.56 1.53 16 3 C -0.26 -3.70 6.21 -37.90 -0.24 -3.94 16 4 C 0.60 9.46 7.57 -12.76 -0.10 9.37 16 5 O -0.53 -8.95 13.56 5.22 0.07 -8.88 16 6 N -0.59 -9.28 2.89 -183.06 -0.53 -9.81 16 7 C 0.06 0.83 6.99 59.84 0.42 1.25 16 8 C 0.12 1.97 5.28 -4.04 -0.02 1.95 16 9 C 0.13 2.46 4.51 -66.67 -0.30 2.16 16 10 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.16 -2.83 7.86 -25.79 -0.20 -3.04 16 12 C 0.15 3.49 7.65 -2.97 -0.02 3.47 16 13 N -0.60 -14.26 3.59 -169.65 -0.61 -14.87 16 14 C -0.23 -5.76 10.17 -15.06 -0.15 -5.91 16 15 H 0.08 1.93 4.17 -52.49 -0.22 1.72 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -26.13 11.29 55.49 0.63 -25.50 16 18 Si 0.90 20.98 29.55 -169.99 -5.02 15.96 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 S 0.24 3.25 17.81 -107.50 -1.91 1.33 16 23 C 0.12 1.79 8.92 -88.51 -0.79 1.00 16 24 N -0.46 -7.03 11.32 -13.51 -0.15 -7.18 16 25 C 0.02 0.23 11.82 -18.04 -0.21 0.02 16 26 C -0.06 -0.67 11.95 -15.66 -0.19 -0.86 16 27 N -0.40 -5.42 3.14 -59.28 -0.19 -5.61 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.12 1.49 5.62 -51.93 -0.29 1.20 16 31 H 0.12 1.79 6.69 -51.93 -0.35 1.44 16 32 H 0.06 0.77 6.32 -40.96 -0.26 0.51 16 33 H 0.08 1.19 5.84 -45.08 -0.26 0.92 16 34 H 0.09 1.48 7.77 -51.93 -0.40 1.07 16 35 H 0.08 1.23 7.53 -51.93 -0.39 0.84 16 36 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.97 6.93 -51.93 -0.36 1.61 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.18 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -32.03 349.36 -9.62 -41.65 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.05 Total: 1.75 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -2.12 Total: 5.88 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.85 Total: -62.96 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.07 Total: -8.88 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.91 Total: 1.33 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.03 -9.62 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.300 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds