Wall clock time and date at job start Tue Mar 31 2020 19:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33010 * 121.94794 * 2 1 4 4 C 1.46879 * 125.22469 * 359.97425 * 3 2 1 5 5 O 1.21667 * 119.99722 * 4.90676 * 4 3 2 6 6 N 1.34777 * 120.00048 * 184.90298 * 4 3 2 7 7 C 1.46495 * 119.99871 * 354.42562 * 6 4 3 8 8 C 1.46498 * 120.00025 * 174.42496 * 6 4 3 9 9 C 1.52996 * 109.47209 * 275.90528 * 8 6 4 10 10 H 1.09001 * 112.96973 * 48.46122 * 9 8 6 11 11 C 1.53942 * 113.77286 * 180.14370 * 9 8 6 12 12 C 1.53949 * 86.29326 * 137.90470 * 11 9 8 13 13 N 1.47582 * 86.23855 * 336.33986 * 12 11 9 14 14 C 1.36935 * 134.49260 * 204.69556 * 13 12 11 15 15 H 1.07995 * 120.00551 * 185.16271 * 14 13 12 16 16 C 1.38814 * 119.99999 * 5.16583 * 14 13 12 17 17 N 1.31622 * 119.99735 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00438 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46854 * 89.99870 * 18 16 14 20 20 H 1.48490 * 109.47528 * 209.99832 * 18 16 14 21 21 H 1.48501 * 109.46964 * 330.00419 * 18 16 14 22 22 S 1.75793 * 109.54966 * 180.24456 * 3 2 1 23 23 C 1.76253 * 90.68674 * 359.65859 * 22 3 2 24 24 N 1.32274 * 141.81274 * 179.97438 * 23 22 3 25 25 C 1.33950 * 109.18572 * 180.39694 * 24 23 22 26 26 C 1.34220 * 108.46486 * 0.02562 * 25 24 23 27 27 N 1.35443 * 109.40591 * 0.34006 * 23 22 3 28 28 H 1.09000 * 109.47014 * 90.02387 * 1 2 3 29 29 H 1.08996 * 109.47130 * 210.02782 * 1 2 3 30 30 H 1.08994 * 109.46982 * 330.02749 * 1 2 3 31 31 H 1.09003 * 109.47344 * 184.81028 * 7 6 4 32 32 H 1.09001 * 109.47222 * 304.81387 * 7 6 4 33 33 H 1.08998 * 109.47200 * 64.81283 * 7 6 4 34 34 H 1.08992 * 109.46970 * 155.90053 * 8 6 4 35 35 H 1.09000 * 109.46885 * 35.89863 * 8 6 4 36 36 H 1.09007 * 113.74108 * 23.56083 * 11 9 8 37 37 H 1.09002 * 113.84317 * 252.26411 * 11 9 8 38 38 H 1.08993 * 113.76578 * 90.69751 * 12 11 9 39 39 H 1.08998 * 113.76973 * 221.98543 * 12 11 9 40 40 H 0.97005 * 119.99625 * 179.97438 * 17 16 14 41 41 H 1.08002 * 125.76516 * 179.97438 * 25 24 23 42 42 H 1.08005 * 126.44066 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2108 1.1286 0.0000 4 6 1.6410 2.4824 -0.0005 5 8 0.4374 2.6357 0.0891 6 7 2.4514 3.5546 -0.1002 7 6 3.9056 3.3776 -0.0850 8 6 1.8782 4.8971 -0.2238 9 6 1.5409 5.1747 -1.6901 10 1 0.9840 4.3637 -2.1594 11 6 0.9325 6.5675 -1.9340 12 6 1.8392 6.6361 -3.1763 13 7 2.6932 5.6490 -2.4875 14 6 4.0183 5.3112 -2.5583 15 1 4.3933 4.4736 -1.9890 16 6 4.8798 6.0454 -3.3620 17 7 4.4229 7.0665 -4.0554 18 14 6.6876 5.5850 -3.4582 19 1 6.8919 4.6088 -4.5585 20 1 7.4953 6.8030 -3.7208 21 1 7.1126 4.9770 -2.1718 22 16 3.9277 0.7512 -0.0071 23 6 3.5700 -0.9746 0.0008 24 7 4.1597 -2.1586 0.0018 25 6 3.2236 -3.1167 0.0013 26 6 2.0159 -2.5310 -0.0005 27 7 2.2278 -1.1560 0.0005 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3905 4.3538 -0.0891 32 1 4.1958 2.8314 0.8125 33 1 4.2125 2.8159 -0.9673 34 1 2.5996 5.6341 0.1289 35 1 0.9704 4.9612 0.3761 36 1 1.1855 7.2977 -1.1652 37 1 -0.1319 6.5486 -2.1682 38 1 1.3709 6.2547 -4.0835 39 1 2.3161 7.6058 -3.3192 40 1 5.0250 7.5798 -4.6167 41 1 3.4092 -4.1806 0.0015 42 1 1.0595 -3.0328 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:30 Heat of formation + Delta-G solvation = 116.901674 kcal Electronic energy + Delta-G solvation = -26871.940970 eV Core-core repulsion = 23175.194911 eV Total energy + Delta-G solvation = -3696.746059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.79072 -41.28384 -39.54148 -37.87698 -36.58055 -34.23261 -32.40679 -31.24480 -30.67279 -29.82170 -28.88816 -27.57991 -25.21318 -25.09927 -24.17576 -23.03466 -21.50804 -20.85833 -20.06716 -19.55729 -18.73745 -18.06120 -17.51159 -17.40318 -16.81022 -16.51410 -16.34209 -15.86428 -15.54841 -15.40977 -15.10974 -14.73739 -14.63599 -14.45296 -14.26696 -14.05794 -14.01532 -13.41822 -13.09810 -12.97065 -12.91622 -12.64155 -12.49695 -12.44428 -12.29590 -12.08807 -11.73698 -11.60218 -11.43804 -11.37067 -11.22483 -11.02267 -10.75950 -10.08321 -9.74465 -8.82222 -8.68317 -7.79854 -5.13035 -0.65161 -0.17089 0.43833 0.87379 1.23049 1.48245 1.50286 1.56933 1.76400 1.86940 1.98922 2.51383 3.15413 3.36766 3.42396 3.48262 3.53786 3.83547 3.97962 4.05788 4.20302 4.21965 4.36189 4.36852 4.43020 4.51032 4.57690 4.65679 4.70173 4.76980 4.86259 4.89016 5.03484 5.09633 5.12459 5.36769 5.40896 5.43305 5.66855 5.69990 5.76641 6.02989 6.19460 6.59299 6.86867 7.00291 7.72283 8.68538 9.36664 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.004087 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.261754 B = 6848.926911 C = 8317.890501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.166 3.834 3 C -0.278 4.278 4 C 0.599 3.401 5 O -0.542 6.542 6 N -0.593 5.593 7 C 0.058 3.942 8 C 0.129 3.871 9 C 0.130 3.870 10 H 0.034 0.966 11 C -0.129 4.129 12 C 0.143 3.857 13 N -0.624 5.624 14 C -0.218 4.218 15 H 0.103 0.897 16 C -0.069 4.069 17 N -0.955 5.955 18 Si 0.955 3.045 19 H -0.298 1.298 20 H -0.301 1.301 21 H -0.253 1.253 22 S 0.235 5.765 23 C 0.089 3.911 24 N -0.494 5.494 25 C 0.008 3.992 26 C -0.050 4.050 27 N -0.409 5.409 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.006 0.994 39 H 0.049 0.951 40 H 0.242 0.758 41 H 0.220 0.780 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 -15.172 12.343 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.049 3.951 3 C -0.400 4.400 4 C 0.386 3.614 5 O -0.422 6.422 6 N -0.323 5.323 7 C -0.087 4.087 8 C 0.007 3.993 9 C 0.023 3.977 10 H 0.051 0.949 11 C -0.168 4.168 12 C 0.017 3.983 13 N -0.351 5.351 14 C -0.346 4.346 15 H 0.120 0.880 16 C -0.262 4.262 17 N -0.605 5.605 18 Si 0.785 3.215 19 H -0.226 1.226 20 H -0.228 1.228 21 H -0.176 1.176 22 S 0.489 5.511 23 C -0.274 4.274 24 N -0.218 5.218 25 C -0.140 4.140 26 C -0.180 4.180 27 N -0.088 5.088 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.023 0.977 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.236 0.764 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -6.160 -14.485 12.314 19.985 hybrid contribution -0.558 -0.848 -1.030 1.446 sum -6.718 -15.333 11.284 20.188 Atomic orbital electron populations 1.21131 0.83568 1.06623 1.05222 1.19533 0.97412 0.82187 0.96011 1.23154 0.98051 0.97210 1.21603 1.16594 0.85825 0.82291 0.76669 1.90710 1.13993 1.85480 1.52050 1.47575 1.06992 1.06930 1.70779 1.22109 0.79752 1.04714 1.02170 1.21915 1.00086 0.81053 0.96288 1.22762 0.87706 0.95403 0.91838 0.94877 1.23536 0.98579 0.96142 0.98500 1.22222 0.89093 0.94176 0.92806 1.46582 1.02978 1.41559 1.43960 1.19735 0.82668 1.10202 1.22029 0.88004 1.25516 1.01422 0.98627 1.00632 1.70015 1.34609 1.22276 1.33620 0.85402 0.81086 0.76404 0.78624 1.22601 1.22802 1.17640 1.85536 0.99951 0.84778 1.80848 1.27921 0.84105 1.04107 1.11306 1.70595 1.33262 0.95866 1.22088 1.23141 0.87327 1.00516 1.02983 1.23615 1.03546 0.77573 1.13238 1.43937 1.07050 1.06895 1.50931 0.88762 0.88258 0.87067 0.87003 0.89304 0.91657 0.88875 0.88349 0.89102 0.90120 0.97660 0.93279 0.94840 0.76397 0.75898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.56 71.24 0.68 -1.35 16 2 C 0.17 4.08 6.79 40.71 0.28 4.35 16 3 C -0.28 -7.68 6.21 23.37 0.15 -7.54 16 4 C 0.60 18.17 7.57 86.50 0.66 18.82 16 5 O -0.54 -17.54 13.56 -4.24 -0.06 -17.59 16 6 N -0.59 -17.96 2.89 -851.32 -2.46 -20.42 16 7 C 0.06 1.61 6.99 127.77 0.89 2.51 16 8 C 0.13 4.01 5.28 86.38 0.46 4.47 16 9 C 0.13 4.88 4.51 45.02 0.20 5.09 16 10 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 11 C -0.13 -4.48 7.86 31.25 0.25 -4.23 16 12 C 0.14 6.61 7.65 86.48 0.66 7.27 16 13 N -0.62 -29.62 3.59 -690.64 -2.48 -32.10 16 14 C -0.22 -11.06 10.17 84.03 0.85 -10.21 16 15 H 0.10 4.66 4.17 -2.91 -0.01 4.65 16 16 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 17 N -0.96 -56.38 11.29 21.65 0.24 -56.14 16 18 Si 0.96 43.68 29.55 68.60 2.03 45.71 16 19 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 22 S 0.23 6.26 17.81 -56.49 -1.01 5.26 16 23 C 0.09 2.55 8.92 179.61 1.60 4.16 16 24 N -0.49 -14.25 11.32 -196.66 -2.23 -16.47 16 25 C 0.01 0.15 11.82 83.45 0.99 1.14 16 26 C -0.05 -0.90 11.95 82.62 0.99 0.09 16 27 N -0.41 -10.02 3.14 -341.45 -1.07 -11.09 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.11 2.46 5.62 -2.39 -0.01 2.45 16 31 H 0.11 3.24 6.69 -2.39 -0.02 3.23 16 32 H 0.09 2.01 6.32 -9.36 -0.06 1.95 16 33 H 0.07 1.98 5.84 -6.74 -0.04 1.94 16 34 H 0.09 2.87 7.77 -2.39 -0.02 2.85 16 35 H 0.10 2.74 7.53 -2.39 -0.02 2.73 16 36 H 0.09 2.91 8.10 -2.38 -0.02 2.89 16 37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.05 2.56 6.93 -2.39 -0.02 2.54 16 40 H 0.24 14.15 8.31 -92.70 -0.77 13.38 16 41 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.22 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -71.04 349.36 3.08 -67.95 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.99 Total: 13.63 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 9.11 Total: 21.26 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -7.99 Total: -136.21 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.06 Total: -17.59 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.01 Total: 5.26 kcal Total: -71.04 3.08 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.855 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds