Wall clock time and date at job start Tue Mar 31 2020 19:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33011 * 121.94490 * 2 1 4 4 C 1.46875 * 125.22399 * 0.02562 * 3 2 1 5 5 O 1.21666 * 119.99941 * 353.98143 * 4 3 2 6 6 N 1.34777 * 119.99824 * 173.98881 * 4 3 2 7 7 C 1.46498 * 120.00087 * 5.24385 * 6 4 3 8 8 C 1.46496 * 119.99847 * 185.24739 * 6 4 3 9 9 C 1.53005 * 109.47260 * 84.03187 * 8 6 4 10 10 H 1.09006 * 112.95827 * 311.03745 * 9 8 6 11 11 C 1.53939 * 113.77097 * 179.36452 * 9 8 6 12 12 C 1.53949 * 86.28864 * 222.08959 * 11 9 8 13 13 N 1.47582 * 113.77157 * 82.71720 * 9 8 6 14 14 C 1.36934 * 134.49298 * 318.93241 * 13 9 8 15 15 H 1.08002 * 119.99798 * 3.53498 * 14 13 9 16 16 C 1.38810 * 120.00100 * 183.53637 * 14 13 9 17 17 N 1.31622 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46896 * 90.00225 * 18 16 14 20 20 H 1.48497 * 109.47318 * 209.99907 * 18 16 14 21 21 H 1.48494 * 109.47269 * 330.00152 * 18 16 14 22 22 S 1.75798 * 109.54548 * 180.02562 * 3 2 1 23 23 C 1.76242 * 90.68888 * 359.97438 * 22 3 2 24 24 N 1.32274 * 141.81030 * 180.02562 * 23 22 3 25 25 C 1.33955 * 109.18875 * 179.97438 * 24 23 22 26 26 C 1.34226 * 108.45841 * 0.22484 * 25 24 23 27 27 N 1.35439 * 109.40985 * 359.97438 * 23 22 3 28 28 H 1.08998 * 109.46819 * 89.97658 * 1 2 3 29 29 H 1.09004 * 109.46883 * 209.97492 * 1 2 3 30 30 H 1.08995 * 109.47033 * 329.97407 * 1 2 3 31 31 H 1.09001 * 109.47338 * 57.51432 * 7 6 4 32 32 H 1.09001 * 109.47351 * 177.51491 * 7 6 4 33 33 H 1.08998 * 109.47184 * 297.52102 * 7 6 4 34 34 H 1.09003 * 109.47403 * 204.02615 * 8 6 4 35 35 H 1.08996 * 109.47663 * 324.02728 * 8 6 4 36 36 H 1.09002 * 113.74338 * 336.42710 * 11 9 8 37 37 H 1.08994 * 113.74739 * 107.63705 * 11 9 8 38 38 H 1.09004 * 113.76844 * 137.90855 * 12 11 9 39 39 H 1.09005 * 113.76681 * 269.18695 * 12 11 9 40 40 H 0.97000 * 119.99281 * 180.02562 * 17 16 14 41 41 H 1.08000 * 125.77402 * 179.97438 * 25 24 23 42 42 H 1.07999 * 126.44157 * 179.77452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2108 1.1287 0.0000 4 6 1.6409 2.4824 0.0005 5 8 0.4391 2.6365 -0.1094 6 7 2.4494 3.5538 0.1227 7 6 3.9034 3.3762 0.1394 8 6 1.8740 4.8960 0.2389 9 6 1.5027 5.1672 1.6982 10 1 0.9270 4.3581 2.1479 11 6 0.9004 6.5637 1.9361 12 6 1.7763 6.6163 3.2010 13 7 2.6367 5.6219 2.5260 14 6 3.9550 5.2655 2.6267 15 1 4.3659 4.5222 1.9595 16 6 4.7633 5.8596 3.5861 17 7 4.2624 6.7652 4.3995 18 14 6.5615 5.3730 3.7238 19 1 7.3801 6.2504 2.8490 20 1 7.0084 5.5225 5.1321 21 1 6.7256 3.9593 3.2999 22 16 3.9278 0.7512 -0.0007 23 6 3.5701 -0.9745 -0.0002 24 7 4.1598 -2.1585 0.0001 25 6 3.2237 -3.1167 0.0010 26 6 2.0160 -2.5310 -0.0038 27 7 2.2279 -1.1560 0.0010 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 4.2182 2.8700 -0.7732 32 1 4.3879 4.3507 0.1999 33 1 4.1862 2.7755 1.0038 34 1 2.6039 5.6343 -0.0934 35 1 0.9806 4.9635 -0.3819 36 1 1.1789 7.2966 1.1788 37 1 -0.1699 6.5510 2.1416 38 1 2.2593 7.5802 3.3612 39 1 1.2814 6.2350 4.0942 40 1 4.8274 7.1805 5.0697 41 1 3.4093 -4.1806 0.0010 42 1 1.0597 -3.0327 -0.0078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:35 Heat of formation + Delta-G solvation = 135.549580 kcal Electronic energy + Delta-G solvation = -26890.324397 eV Core-core repulsion = 23194.386973 eV Total energy + Delta-G solvation = -3695.937425 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.82010 -40.04206 -37.98840 -36.79781 -35.31067 -32.30284 -31.36358 -30.33353 -29.39093 -28.20911 -27.57546 -26.36022 -23.92492 -23.36442 -23.00826 -21.83233 -20.51737 -19.21339 -18.86066 -18.50768 -17.07989 -16.82955 -16.44189 -16.16310 -15.38461 -15.25243 -14.97843 -14.60259 -14.39693 -13.99028 -13.79840 -13.54804 -13.41190 -13.23964 -13.13641 -12.90574 -12.83128 -12.11624 -11.59316 -11.54104 -11.41993 -11.17868 -11.03841 -11.01934 -10.76201 -10.61654 -10.49937 -10.35761 -10.12456 -9.81733 -9.72133 -9.39147 -9.06696 -8.82327 -8.47927 -7.67623 -6.88981 -5.79816 -3.11036 0.38546 0.84697 1.45293 1.87844 2.22595 2.73068 2.99871 3.15766 3.34330 3.39010 3.42592 4.17563 4.39117 4.40024 4.52081 4.79046 4.97423 5.07988 5.14694 5.17330 5.30729 5.39102 5.41176 5.46816 5.62109 5.73864 5.80112 5.85886 5.91679 5.96054 6.00247 6.16739 6.30779 6.38400 6.50483 6.62296 6.66302 6.83216 7.22156 7.35723 7.45492 7.53971 7.55324 7.95370 8.08877 9.00170 9.68896 10.60674 11.37802 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.004144 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.444667 B = 6755.367883 C = 8215.008866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.255 4.255 4 C 0.597 3.403 5 O -0.527 6.527 6 N -0.587 5.587 7 C 0.056 3.944 8 C 0.120 3.880 9 C 0.126 3.874 10 H 0.046 0.954 11 C -0.158 4.158 12 C 0.162 3.838 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.087 0.913 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.899 3.101 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.279 1.279 22 S 0.237 5.763 23 C 0.120 3.880 24 N -0.464 5.464 25 C 0.020 3.980 26 C -0.062 4.062 27 N -0.403 5.403 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.186 0.814 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 -12.257 -11.202 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.039 3.961 3 C -0.377 4.377 4 C 0.384 3.616 5 O -0.406 6.406 6 N -0.317 5.317 7 C -0.090 4.090 8 C -0.002 4.002 9 C 0.018 3.982 10 H 0.063 0.937 11 C -0.197 4.197 12 C 0.037 3.963 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.104 0.896 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.729 3.271 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 S 0.491 5.509 23 C -0.244 4.244 24 N -0.187 5.187 25 C -0.128 4.128 26 C -0.193 4.193 27 N -0.082 5.082 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.203 0.797 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.641 -11.559 -11.108 16.689 hybrid contribution -0.820 -1.378 0.480 1.674 sum -5.461 -12.936 -10.628 17.611 Atomic orbital electron populations 1.20998 0.85341 1.05485 1.04507 1.19176 0.96375 0.82450 0.98110 1.23289 0.97583 0.97474 1.19378 1.16453 0.85987 0.81845 0.77343 1.90751 1.13567 1.85140 1.51170 1.47518 1.06496 1.07115 1.70592 1.22141 0.80496 1.04993 1.01372 1.22102 0.99061 0.80501 0.98575 1.22612 0.89817 0.95137 0.90595 0.93660 1.23768 0.98032 0.96865 1.01068 1.22148 0.88018 0.94808 0.91296 1.46209 1.03434 1.40548 1.42697 1.19250 0.82940 1.19493 1.14088 0.89558 1.24790 0.98033 0.99565 0.97894 1.69826 1.34736 1.29634 1.22219 0.86323 0.85239 0.78162 0.77349 1.21453 1.21637 1.20459 1.85720 1.00139 0.84664 1.80386 1.27813 0.83126 1.03873 1.09610 1.70638 1.31524 0.95008 1.21560 1.22453 0.87643 0.99395 1.03352 1.22814 1.01922 0.78745 1.15856 1.43701 1.07559 1.05987 1.50942 0.89277 0.91181 0.86435 0.91861 0.86306 0.90403 0.89249 0.90113 0.90660 0.92880 0.91304 0.95683 0.93698 0.79729 0.80052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.41 36.01 0.34 -0.80 16 2 C 0.16 2.09 6.79 -82.45 -0.56 1.53 16 3 C -0.26 -3.71 6.21 -37.90 -0.24 -3.94 16 4 C 0.60 9.51 7.55 -12.77 -0.10 9.41 16 5 O -0.53 -8.99 13.67 5.22 0.07 -8.91 16 6 N -0.59 -9.29 2.89 -183.06 -0.53 -9.82 16 7 C 0.06 0.80 6.98 59.85 0.42 1.22 16 8 C 0.12 1.96 5.26 -4.04 -0.02 1.94 16 9 C 0.13 2.45 4.49 -66.86 -0.30 2.15 16 10 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.16 -2.84 7.86 -25.80 -0.20 -3.04 16 12 C 0.16 3.69 7.43 -2.85 -0.02 3.67 16 13 N -0.60 -14.24 3.58 -169.72 -0.61 -14.85 16 14 C -0.23 -5.83 10.31 -15.06 -0.16 -5.98 16 15 H 0.09 1.98 3.79 -52.49 -0.20 1.78 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -26.31 11.49 55.49 0.64 -25.67 16 18 Si 0.90 21.01 29.55 -169.99 -5.02 15.98 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 S 0.24 3.26 17.82 -107.50 -1.92 1.35 16 23 C 0.12 1.80 8.92 -88.52 -0.79 1.02 16 24 N -0.46 -7.07 11.32 -13.51 -0.15 -7.22 16 25 C 0.02 0.24 11.82 -18.04 -0.21 0.02 16 26 C -0.06 -0.68 11.95 -15.65 -0.19 -0.86 16 27 N -0.40 -5.45 3.14 -59.28 -0.19 -5.64 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.12 1.49 5.89 -51.93 -0.31 1.18 16 31 H 0.06 0.75 6.42 -43.05 -0.28 0.48 16 32 H 0.12 1.77 6.39 -51.93 -0.33 1.44 16 33 H 0.08 1.22 5.96 -43.12 -0.26 0.96 16 34 H 0.09 1.43 7.78 -51.93 -0.40 1.03 16 35 H 0.08 1.22 7.54 -51.93 -0.39 0.83 16 36 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.71 7.34 -51.93 -0.38 1.33 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -32.30 349.62 -9.62 -41.92 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.06 Total: 1.54 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.12 Total: 6.06 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.84 Total: -63.21 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.92 Total: 1.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.30 -9.62 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.468 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds