Wall clock time and date at job start Tue Mar 31 2020 19:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33011 * 121.94490 * 2 1 4 4 C 1.46875 * 125.22399 * 0.02562 * 3 2 1 5 5 O 1.21666 * 119.99941 * 353.98143 * 4 3 2 6 6 N 1.34777 * 119.99824 * 173.98881 * 4 3 2 7 7 C 1.46498 * 120.00087 * 5.24385 * 6 4 3 8 8 C 1.46496 * 119.99847 * 185.24739 * 6 4 3 9 9 C 1.53005 * 109.47260 * 84.03187 * 8 6 4 10 10 H 1.09006 * 112.95827 * 311.03745 * 9 8 6 11 11 C 1.53939 * 113.77097 * 179.36452 * 9 8 6 12 12 C 1.53949 * 86.28864 * 222.08959 * 11 9 8 13 13 N 1.47582 * 113.77157 * 82.71720 * 9 8 6 14 14 C 1.36934 * 134.49298 * 318.93241 * 13 9 8 15 15 H 1.08002 * 119.99798 * 3.53498 * 14 13 9 16 16 C 1.38810 * 120.00100 * 183.53637 * 14 13 9 17 17 N 1.31622 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46896 * 90.00225 * 18 16 14 20 20 H 1.48497 * 109.47318 * 209.99907 * 18 16 14 21 21 H 1.48494 * 109.47269 * 330.00152 * 18 16 14 22 22 S 1.75798 * 109.54548 * 180.02562 * 3 2 1 23 23 C 1.76242 * 90.68888 * 359.97438 * 22 3 2 24 24 N 1.32274 * 141.81030 * 180.02562 * 23 22 3 25 25 C 1.33955 * 109.18875 * 179.97438 * 24 23 22 26 26 C 1.34226 * 108.45841 * 0.22484 * 25 24 23 27 27 N 1.35439 * 109.40985 * 359.97438 * 23 22 3 28 28 H 1.08998 * 109.46819 * 89.97658 * 1 2 3 29 29 H 1.09004 * 109.46883 * 209.97492 * 1 2 3 30 30 H 1.08995 * 109.47033 * 329.97407 * 1 2 3 31 31 H 1.09001 * 109.47338 * 57.51432 * 7 6 4 32 32 H 1.09001 * 109.47351 * 177.51491 * 7 6 4 33 33 H 1.08998 * 109.47184 * 297.52102 * 7 6 4 34 34 H 1.09003 * 109.47403 * 204.02615 * 8 6 4 35 35 H 1.08996 * 109.47663 * 324.02728 * 8 6 4 36 36 H 1.09002 * 113.74338 * 336.42710 * 11 9 8 37 37 H 1.08994 * 113.74739 * 107.63705 * 11 9 8 38 38 H 1.09004 * 113.76844 * 137.90855 * 12 11 9 39 39 H 1.09005 * 113.76681 * 269.18695 * 12 11 9 40 40 H 0.97000 * 119.99281 * 180.02562 * 17 16 14 41 41 H 1.08000 * 125.77402 * 179.97438 * 25 24 23 42 42 H 1.07999 * 126.44157 * 179.77452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2108 1.1287 0.0000 4 6 1.6409 2.4824 0.0005 5 8 0.4391 2.6365 -0.1094 6 7 2.4494 3.5538 0.1227 7 6 3.9034 3.3762 0.1394 8 6 1.8740 4.8960 0.2389 9 6 1.5027 5.1672 1.6982 10 1 0.9270 4.3581 2.1479 11 6 0.9004 6.5637 1.9361 12 6 1.7763 6.6163 3.2010 13 7 2.6367 5.6219 2.5260 14 6 3.9550 5.2655 2.6267 15 1 4.3659 4.5222 1.9595 16 6 4.7633 5.8596 3.5861 17 7 4.2624 6.7652 4.3995 18 14 6.5615 5.3730 3.7238 19 1 7.3801 6.2504 2.8490 20 1 7.0084 5.5225 5.1321 21 1 6.7256 3.9593 3.2999 22 16 3.9278 0.7512 -0.0007 23 6 3.5701 -0.9745 -0.0002 24 7 4.1598 -2.1585 0.0001 25 6 3.2237 -3.1167 0.0010 26 6 2.0160 -2.5310 -0.0038 27 7 2.2279 -1.1560 0.0010 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 4.2182 2.8700 -0.7732 32 1 4.3879 4.3507 0.1999 33 1 4.1862 2.7755 1.0038 34 1 2.6039 5.6343 -0.0934 35 1 0.9806 4.9635 -0.3819 36 1 1.1789 7.2966 1.1788 37 1 -0.1699 6.5510 2.1416 38 1 2.2593 7.5802 3.3612 39 1 1.2814 6.2350 4.0942 40 1 4.8274 7.1805 5.0697 41 1 3.4093 -4.1806 0.0010 42 1 1.0597 -3.0327 -0.0078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:34 Heat of formation + Delta-G solvation = 116.457232 kcal Electronic energy + Delta-G solvation = -26891.152303 eV Core-core repulsion = 23194.386973 eV Total energy + Delta-G solvation = -3696.765331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.79123 -41.28298 -39.55312 -37.87738 -36.57537 -34.23943 -32.40921 -31.24747 -30.67320 -29.83368 -28.88399 -27.59348 -25.22024 -25.10696 -24.17384 -23.03831 -21.51179 -20.86548 -20.06361 -19.55731 -18.71424 -18.06594 -17.51811 -17.39974 -16.84924 -16.50771 -16.34611 -15.85914 -15.54709 -15.45991 -15.08299 -14.72737 -14.56875 -14.52030 -14.27818 -14.09317 -13.93498 -13.43736 -13.07617 -13.00957 -12.88739 -12.69071 -12.49689 -12.46857 -12.26547 -12.09935 -11.77104 -11.57931 -11.44781 -11.37028 -11.15995 -11.06566 -10.77918 -10.08361 -9.73919 -8.83237 -8.68274 -7.82013 -5.12908 -0.64737 -0.17175 0.43723 0.87566 1.22756 1.47870 1.50100 1.56383 1.76499 1.86825 1.99405 2.51535 3.15501 3.36130 3.42791 3.48785 3.53543 3.83050 3.97484 4.05825 4.19856 4.21666 4.35924 4.36667 4.42532 4.51786 4.58187 4.64841 4.68765 4.77133 4.85906 4.88760 5.03220 5.09119 5.11499 5.36413 5.40094 5.43022 5.65572 5.69861 5.75040 6.00325 6.19047 6.59230 6.86930 6.99559 7.71946 8.68129 9.36536 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.004144 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.444667 B = 6755.367883 C = 8215.008866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.164 3.836 3 C -0.277 4.277 4 C 0.598 3.402 5 O -0.541 6.541 6 N -0.593 5.593 7 C 0.056 3.944 8 C 0.129 3.871 9 C 0.129 3.871 10 H 0.031 0.969 11 C -0.130 4.130 12 C 0.152 3.848 13 N -0.624 5.624 14 C -0.220 4.220 15 H 0.108 0.892 16 C -0.072 4.072 17 N -0.958 5.958 18 Si 0.956 3.044 19 H -0.282 1.282 20 H -0.307 1.307 21 H -0.263 1.263 22 S 0.235 5.765 23 C 0.089 3.911 24 N -0.494 5.494 25 C 0.008 3.992 26 C -0.050 4.050 27 N -0.408 5.408 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.006 0.994 40 H 0.242 0.758 41 H 0.220 0.780 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 -14.459 -13.165 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.047 3.953 3 C -0.399 4.399 4 C 0.385 3.615 5 O -0.422 6.422 6 N -0.323 5.323 7 C -0.089 4.089 8 C 0.006 3.994 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.168 4.168 12 C 0.027 3.973 13 N -0.351 5.351 14 C -0.349 4.349 15 H 0.125 0.875 16 C -0.264 4.264 17 N -0.608 5.608 18 Si 0.785 3.215 19 H -0.209 1.209 20 H -0.234 1.234 21 H -0.187 1.187 22 S 0.489 5.511 23 C -0.274 4.274 24 N -0.218 5.218 25 C -0.140 4.140 26 C -0.180 4.180 27 N -0.088 5.088 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.024 0.976 40 H 0.051 0.949 41 H 0.236 0.764 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.736 -13.801 -13.114 19.884 hybrid contribution -0.585 -0.870 1.065 1.495 sum -6.321 -14.671 -12.049 20.010 Atomic orbital electron populations 1.21043 0.83532 1.05841 1.05504 1.19525 0.97419 0.82209 0.96131 1.23171 0.98050 0.97222 1.21491 1.16593 0.85807 0.82300 0.76786 1.90737 1.14078 1.85528 1.51847 1.47564 1.07020 1.06988 1.70752 1.22139 0.79807 1.04737 1.02238 1.21928 1.00061 0.81090 0.96294 1.22695 0.88008 0.95412 0.91705 0.95190 1.23559 0.98797 0.96147 0.98322 1.22101 0.89043 0.93292 0.92884 1.46598 1.03911 1.41131 1.43416 1.19850 0.83928 1.18118 1.12967 0.87486 1.25540 1.01731 1.00512 0.98609 1.70024 1.35641 1.31678 1.23428 0.85401 0.81188 0.78701 0.76226 1.20928 1.23397 1.18701 1.85512 0.99966 0.84809 1.80839 1.27908 0.84107 1.04096 1.11335 1.70595 1.33264 0.95861 1.22096 1.23144 0.87324 1.00513 1.02984 1.23618 1.03551 0.77559 1.13236 1.43923 1.07036 1.06887 1.50946 0.87759 0.88650 0.88154 0.89283 0.86836 0.91648 0.88712 0.88337 0.88834 0.90087 0.94150 0.97608 0.94865 0.76384 0.75885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.41 71.24 0.67 -1.25 16 2 C 0.16 4.08 6.79 40.71 0.28 4.35 16 3 C -0.28 -7.73 6.21 23.37 0.15 -7.58 16 4 C 0.60 18.26 7.55 86.50 0.65 18.91 16 5 O -0.54 -17.66 13.67 -4.24 -0.06 -17.72 16 6 N -0.59 -17.98 2.89 -851.30 -2.46 -20.44 16 7 C 0.06 1.56 6.98 127.77 0.89 2.45 16 8 C 0.13 3.97 5.26 86.38 0.45 4.42 16 9 C 0.13 4.85 4.49 45.09 0.20 5.05 16 10 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 11 C -0.13 -4.45 7.86 31.25 0.25 -4.20 16 12 C 0.15 7.06 7.43 86.44 0.64 7.70 16 13 N -0.62 -29.61 3.58 -690.88 -2.48 -32.09 16 14 C -0.22 -11.18 10.31 84.03 0.87 -10.32 16 15 H 0.11 4.84 3.79 -2.91 -0.01 4.83 16 16 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 17 N -0.96 -56.97 11.49 21.65 0.25 -56.72 16 18 Si 0.96 43.85 29.55 68.60 2.03 45.88 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 S 0.23 6.30 17.82 -56.49 -1.01 5.30 16 23 C 0.09 2.57 8.92 179.61 1.60 4.17 16 24 N -0.49 -14.34 11.32 -196.67 -2.23 -16.57 16 25 C 0.01 0.15 11.82 83.45 0.99 1.14 16 26 C -0.05 -0.91 11.95 82.62 0.99 0.08 16 27 N -0.41 -10.09 3.14 -341.46 -1.07 -11.17 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.10 2.36 5.89 -2.39 -0.01 2.35 16 31 H 0.09 1.99 6.42 -8.03 -0.05 1.94 16 32 H 0.11 3.25 6.39 -2.39 -0.02 3.23 16 33 H 0.07 2.00 5.96 -7.99 -0.05 1.95 16 34 H 0.09 2.84 7.78 -2.39 -0.02 2.82 16 35 H 0.10 2.72 7.54 -2.39 -0.02 2.70 16 36 H 0.09 2.90 8.10 -2.39 -0.02 2.88 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.04 2.08 7.34 -2.38 -0.02 2.06 16 39 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.22 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -71.92 349.62 3.06 -68.85 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.99 Total: 13.18 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 9.09 Total: 21.48 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -7.99 Total: -136.98 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.06 Total: -17.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -1.01 Total: 5.30 kcal Total: -71.92 3.06 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.311 kcal (2) G-P(sol) polarization free energy of solvation -71.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds