Wall clock time and date at job start Tue Mar 31 2020 17:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48504 * 109.46868 * 269.99747 * 3 2 1 5 5 H 1.48496 * 109.47212 * 30.00053 * 3 2 1 6 6 H 1.48504 * 109.46912 * 150.00339 * 3 2 1 7 7 C 1.38795 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00481 * 179.97438 * 7 2 1 9 9 S 1.76211 * 119.99940 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99850 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47030 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99942 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00010 * 180.02562 * 11 10 9 14 14 C 1.47355 * 125.57393 * 0.02562 * 13 11 10 15 15 C 1.54827 * 104.79164 * 154.81173 * 14 13 11 16 16 C 1.54932 * 101.89686 * 37.09865 * 15 14 13 17 17 H 1.08996 * 112.82527 * 87.58676 * 16 15 14 18 18 C 1.55785 * 108.55495 * 215.37809 * 16 15 14 19 19 N 1.47857 * 107.26690 * 113.94108 * 18 16 15 20 20 C 1.38401 * 111.00018 * 212.11528 * 19 18 16 21 21 N 1.32487 * 119.21673 * 356.94550 * 20 19 18 22 22 C 1.32284 * 120.73826 * 179.71729 * 21 20 19 23 23 C 1.38602 * 119.19796 * 0.54304 * 22 21 20 24 24 C 1.38603 * 118.55508 * 359.73225 * 23 22 21 25 25 N 1.32271 * 119.20452 * 359.97438 * 24 23 22 26 26 C 1.48420 * 105.77374 * 332.60365 * 19 18 16 27 27 C 1.46848 * 125.57096 * 180.02562 * 13 11 10 28 28 H 1.09005 * 112.02355 * 59.36628 * 27 13 11 29 29 H 0.96995 * 119.99866 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47114 * 60.00329 * 10 9 7 31 31 H 1.08994 * 109.47627 * 299.99741 * 10 9 7 32 32 H 1.08997 * 110.37749 * 35.98691 * 14 13 11 33 33 H 1.09001 * 110.47463 * 273.68714 * 14 13 11 34 34 H 1.09001 * 110.94621 * 155.25201 * 15 14 13 35 35 H 1.09001 * 110.94750 * 278.94959 * 15 14 13 36 36 H 1.08995 * 110.48893 * 354.15449 * 18 16 15 37 37 H 1.09001 * 109.33467 * 233.07920 * 18 16 15 38 38 H 1.08002 * 120.39881 * 180.30160 * 22 21 20 39 39 H 1.07999 * 120.72381 * 179.75020 * 23 22 21 40 40 H 1.08004 * 120.39920 * 179.97438 * 24 23 22 41 41 H 1.09001 * 110.58681 * 280.54130 * 26 19 18 42 42 H 1.09001 * 110.71880 * 157.68854 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5480 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9872 -5.3027 0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0007 14 6 4.3142 -6.2431 0.0014 15 6 4.8003 -7.5676 0.6390 16 6 3.7799 -8.5874 0.0741 17 1 4.0800 -8.9953 -0.8911 18 6 3.4974 -9.6625 1.1655 19 7 2.0844 -9.5124 1.5741 20 6 1.9160 -9.8418 2.9077 21 7 2.9546 -10.2854 3.6004 22 6 2.8289 -10.6038 4.8782 23 6 1.5902 -10.4791 5.4874 24 6 0.5238 -10.0173 4.7319 25 7 0.7187 -9.7107 3.4601 26 6 1.7431 -8.0886 1.3307 27 6 2.4650 -7.7619 0.0009 28 1 1.8624 -8.0241 -0.8689 29 1 -0.4850 0.8400 -0.0004 30 1 3.1243 -3.7314 0.8895 31 1 3.1243 -3.7315 -0.8905 32 1 4.6364 -5.3923 0.6018 33 1 4.6906 -6.1519 -1.0175 34 1 5.8125 -7.8081 0.3138 35 1 4.7428 -7.5206 1.7265 36 1 4.1502 -9.5137 2.0256 37 1 3.6586 -10.6550 0.7447 38 1 3.6803 -10.9603 5.4389 39 1 1.4588 -10.7358 6.5281 40 1 -0.4546 -9.9091 5.1764 41 1 2.1219 -7.4604 2.1369 42 1 0.6657 -7.9633 1.2226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090297021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:23 Heat of formation + Delta-G solvation = 52.938483 kcal Electronic energy + Delta-G solvation = -25980.648694 eV Core-core repulsion = 22281.128983 eV Total energy + Delta-G solvation = -3699.519711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66387 -40.40227 -38.26513 -36.15374 -34.02498 -32.54176 -32.43229 -31.42948 -29.98484 -28.51462 -27.53484 -25.49191 -24.74057 -24.17090 -23.06399 -21.71708 -20.51648 -19.21402 -17.92545 -17.84233 -17.58731 -16.75853 -16.31727 -15.81768 -15.66247 -15.17953 -14.81261 -14.77974 -14.62681 -14.30030 -13.88683 -13.78244 -13.62976 -13.23950 -12.89915 -12.69363 -12.56983 -12.29897 -12.21379 -11.81482 -11.38620 -11.30473 -11.15016 -11.07030 -11.02876 -11.02646 -10.85587 -10.76186 -10.35535 -9.82308 -9.46705 -9.42613 -9.07248 -8.77909 -8.52185 -8.24070 -6.50960 -6.22161 -3.92993 0.64792 0.83693 2.72481 2.99586 3.07950 3.21764 3.25653 3.29774 3.48107 3.58453 3.77737 4.12096 4.15449 4.20137 4.33217 4.40129 4.54481 4.78195 4.83652 4.85806 4.93866 5.00455 5.04593 5.10178 5.12890 5.30460 5.39828 5.48661 5.50669 5.53730 5.60510 5.64442 5.79892 5.86444 5.91685 5.93467 5.96825 6.11656 6.14516 6.44167 6.47320 6.94298 7.58606 7.62649 7.87051 8.34502 8.52685 9.22984 10.85258 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002658 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.837505 B =10530.470311 C =11260.930286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.547 3.453 12 O -0.509 6.509 13 N -0.622 5.622 14 C 0.101 3.899 15 C -0.128 4.128 16 C -0.107 4.107 17 H 0.110 0.890 18 C 0.050 3.950 19 N -0.445 5.445 20 C 0.489 3.511 21 N -0.553 5.553 22 C 0.170 3.830 23 C -0.263 4.263 24 C 0.175 3.825 25 N -0.523 5.523 26 C 0.055 3.945 27 C 0.140 3.860 28 H 0.100 0.900 29 H 0.268 0.732 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.168 0.832 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.057 0.943 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 -22.924 7.557 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.382 6.382 13 N -0.360 5.360 14 C -0.022 4.022 15 C -0.166 4.166 16 C -0.126 4.126 17 H 0.128 0.872 18 C -0.077 4.077 19 N -0.165 5.165 20 C 0.133 3.867 21 N -0.273 5.273 22 C 0.003 3.997 23 C -0.286 4.286 24 C 0.007 3.993 25 N -0.240 5.240 26 C -0.071 4.071 27 C 0.035 3.965 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.185 0.815 39 H 0.165 0.835 40 H 0.188 0.812 41 H 0.075 0.925 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.895 -23.102 6.223 25.526 hybrid contribution 2.254 1.358 1.412 2.987 sum 11.150 -21.744 7.636 25.601 Atomic orbital electron populations 1.70019 1.05944 1.27468 1.46801 1.24993 0.95031 0.99021 0.94536 0.86167 0.79396 0.81567 0.78364 1.20244 1.20745 1.19708 1.22853 0.94873 0.91609 1.59006 0.90956 1.85424 1.04827 0.96303 1.96706 1.23512 1.06527 0.94900 1.04762 1.20094 0.85767 0.85436 0.75102 1.90726 1.14817 1.85022 1.47620 1.48549 1.06749 1.04803 1.75920 1.22323 0.80196 0.98534 1.01195 1.22934 0.99101 0.93799 1.00786 1.23440 0.94719 0.95043 0.99421 0.87160 1.23298 0.86646 0.99804 0.97963 1.61157 1.22161 1.22328 1.10817 1.21207 0.85064 0.90674 0.89749 1.68285 1.32448 1.17703 1.08820 1.23064 0.97064 0.89937 0.89593 1.22756 0.95746 1.06809 1.03317 1.23186 0.99600 0.88263 0.88252 1.68108 1.23134 1.19751 1.13014 1.23540 1.03568 0.83023 0.97012 1.22355 0.95486 0.81180 0.97501 0.88246 0.92166 0.89409 0.89216 0.90122 0.90958 0.89325 0.90620 0.89350 0.89534 0.81506 0.83523 0.81186 0.92483 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.01 5.14 36.01 0.19 -2.82 16 11 C 0.55 10.56 7.66 -10.98 -0.08 10.48 16 12 O -0.51 -11.74 15.83 5.55 0.09 -11.65 16 13 N -0.62 -8.97 2.97 -161.51 -0.48 -9.45 16 14 C 0.10 1.05 6.70 -2.61 -0.02 1.03 16 15 C -0.13 -1.04 6.39 -24.75 -0.16 -1.19 16 16 C -0.11 -0.95 4.15 -86.82 -0.36 -1.31 16 17 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 18 C 0.05 0.49 5.84 -1.81 -0.01 0.48 16 19 N -0.44 -5.68 5.36 -170.51 -0.91 -6.59 16 20 C 0.49 6.39 7.02 -322.81 -2.27 4.12 16 21 N -0.55 -6.16 8.20 -13.93 -0.11 -6.28 16 22 C 0.17 1.38 11.30 -17.22 -0.19 1.19 16 23 C -0.26 -1.90 10.16 -39.31 -0.40 -2.30 16 24 C 0.17 1.65 11.30 -17.23 -0.19 1.45 16 25 N -0.52 -6.94 10.14 -13.93 -0.14 -7.08 16 26 C 0.06 0.78 5.25 -2.04 -0.01 0.77 16 27 C 0.14 1.78 3.80 -65.50 -0.25 1.53 16 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.68 7.83 -51.91 -0.41 1.27 16 31 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 32 H 0.08 0.84 7.43 -51.93 -0.39 0.45 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.68 7.51 -51.93 -0.39 0.29 16 36 H 0.09 0.88 5.78 -51.93 -0.30 0.58 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 42 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -36.46 360.63 -11.85 -48.31 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.67 Total: -0.22 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -3.56 Total: 0.46 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.92 Total: -54.89 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.46 -11.85 -48.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090297021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.250 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds