Wall clock time and date at job start Tue Mar 31 2020 18:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00326 * 2 1 4 4 N 1.34784 * 119.99832 * 180.02562 * 2 1 3 5 5 C 1.39300 * 119.99774 * 184.90232 * 4 2 1 6 6 C 1.38824 * 120.16639 * 127.93617 * 5 4 2 7 7 C 1.50702 * 119.96017 * 0.02562 * 6 5 4 8 8 C 1.38041 * 120.07531 * 179.97438 * 6 5 4 9 9 C 1.38572 * 120.41603 * 0.02579 * 8 6 5 10 10 C 1.37779 * 120.33719 * 0.24787 * 9 8 6 11 11 C 1.39754 * 119.91475 * 359.48162 * 10 9 8 12 12 C 1.47407 * 120.20075 * 180.26921 * 11 10 9 13 13 O 1.21629 * 120.00382 * 304.92965 * 12 11 10 14 14 N 1.34779 * 119.99937 * 124.93802 * 12 11 10 15 15 C 1.36906 * 119.99885 * 3.50941 * 14 12 11 16 16 H 1.07989 * 120.00130 * 125.39862 * 15 14 12 17 17 C 1.39029 * 119.99408 * 305.39912 * 15 14 12 18 18 N 1.31373 * 120.00506 * 354.89947 * 17 15 14 19 19 Si 1.86805 * 119.99585 * 174.90281 * 17 15 14 20 20 H 1.48495 * 109.47135 * 59.99783 * 19 17 15 21 21 H 1.48499 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46790 * 300.00015 * 19 17 15 23 23 C 1.46501 * 120.00329 * 183.50970 * 14 12 11 24 24 C 1.53002 * 109.46960 * 94.52640 * 23 14 12 25 25 C 1.50694 * 109.46866 * 180.02562 * 24 23 14 26 26 O 1.20832 * 120.00333 * 359.97438 * 25 24 23 27 27 O 1.34224 * 119.99991 * 179.97438 * 25 24 23 28 28 H 1.09002 * 109.47033 * 240.00110 * 1 2 3 29 29 H 1.09002 * 109.47010 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47219 * 119.99608 * 1 2 3 31 31 H 0.96993 * 120.00156 * 4.90792 * 4 2 1 32 32 H 1.08994 * 109.46981 * 265.35161 * 7 6 5 33 33 H 1.09003 * 109.47389 * 25.35509 * 7 6 5 34 34 H 1.09007 * 109.46952 * 145.35264 * 7 6 5 35 35 H 1.08000 * 119.78536 * 180.02562 * 8 6 5 36 36 H 1.08002 * 119.83427 * 179.97438 * 9 8 6 37 37 H 1.08007 * 120.04087 * 179.71996 * 10 9 8 38 38 H 0.96996 * 120.00143 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47192 * 214.52473 * 23 14 12 40 40 H 1.09000 * 109.46539 * 334.52524 * 23 14 12 41 41 H 1.08998 * 109.47032 * 299.99931 * 24 23 14 42 42 H 1.08995 * 109.46985 * 59.99878 * 24 23 14 43 43 H 0.96704 * 117.00296 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5700 -1.1695 0.1026 6 6 4.1968 -1.9487 1.0655 7 6 3.3733 -2.7951 2.0017 8 6 5.5736 -1.9499 1.1656 9 6 6.3400 -1.1756 0.3093 10 6 5.7354 -0.3916 -0.6490 11 6 4.3429 -0.3842 -0.7664 12 6 3.6898 0.4477 -1.7933 13 8 3.9165 1.6417 -1.8433 14 7 2.8413 -0.1146 -2.6766 15 6 2.5304 -1.4441 -2.5760 16 1 1.4977 -1.7539 -2.5146 17 6 3.5441 -2.3952 -2.5528 18 7 4.7934 -2.0283 -2.7280 19 14 3.1299 -4.1951 -2.2725 20 1 2.2200 -4.6667 -3.3471 21 1 4.3782 -4.9991 -2.2919 22 1 2.4623 -4.3500 -0.9552 23 6 2.2518 0.6966 -3.7446 24 6 3.0981 0.5637 -5.0123 25 6 2.4921 1.3987 -6.1106 26 8 1.4862 2.0345 -5.9012 27 8 3.0697 1.4362 -7.3217 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6985 -2.0057 -0.0728 32 1 3.1961 -2.2464 2.9267 33 1 2.4189 -3.0332 1.5319 34 1 3.9093 -3.7180 2.2237 35 1 6.0564 -2.5582 1.9162 36 1 7.4165 -1.1834 0.3962 37 1 6.3372 0.2135 -1.3110 38 1 5.5006 -2.6918 -2.7114 39 1 1.2382 0.3504 -3.9465 40 1 2.2240 1.7411 -3.4341 41 1 4.1118 0.9099 -4.8104 42 1 3.1260 -0.4808 -5.3227 43 1 2.6446 1.9861 -7.9940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589166314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:39 Heat of formation + Delta-G solvation = -123.035782 kcal Electronic energy + Delta-G solvation = -31236.381218 eV Core-core repulsion = 27054.185069 eV Total energy + Delta-G solvation = -4182.196150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.25171 -39.79709 -37.97155 -37.48473 -35.82365 -34.79297 -33.87218 -32.62870 -31.61877 -30.37058 -29.95334 -28.18864 -26.12652 -25.20200 -24.35592 -22.41713 -21.14530 -20.29474 -19.82516 -19.18622 -17.79082 -17.20232 -16.86183 -16.31821 -16.10340 -15.63788 -15.45681 -15.12705 -14.69412 -14.31114 -14.03820 -13.85341 -13.42630 -13.24961 -13.21418 -12.79440 -12.69088 -12.55714 -12.36600 -12.21075 -11.91292 -11.80815 -11.66937 -11.52557 -11.20362 -11.16148 -11.00451 -10.96788 -10.79479 -10.59273 -10.55917 -10.21024 -10.13478 -9.36619 -9.23717 -8.88848 -8.47310 -7.70582 -7.40029 -7.21914 -6.39120 -4.24134 2.06692 2.16705 2.62389 3.01455 3.09656 3.14054 3.36795 3.42047 3.92859 4.01083 4.20477 4.64067 4.91437 5.03974 5.35987 5.42075 5.49860 5.59624 5.63018 5.74113 5.77944 5.79176 5.89139 5.94008 6.01652 6.14684 6.17776 6.26028 6.33196 6.40215 6.53115 6.61979 6.73719 6.82603 6.91266 7.11761 7.15611 7.30596 7.33703 7.48581 7.83830 7.92433 8.16872 8.26352 8.57447 8.91125 8.95610 9.57576 10.03311 10.64625 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.005612 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.023930 B = 4988.227717 C = 5340.684607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.521 6.521 4 N -0.650 5.650 5 C 0.179 3.821 6 C -0.124 4.124 7 C -0.101 4.101 8 C -0.119 4.119 9 C -0.139 4.139 10 C -0.049 4.049 11 C -0.011 4.011 12 C 0.580 3.420 13 O -0.584 6.584 14 N -0.458 5.458 15 C -0.343 4.343 16 H 0.076 0.924 17 C 0.059 3.941 18 N -0.850 5.850 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.134 3.866 24 C -0.117 4.117 25 C 0.483 3.517 26 O -0.525 6.525 27 O -0.522 6.522 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.402 0.598 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.272 0.728 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 -4.368 2.728 6.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.295 3.705 3 O -0.396 6.396 4 N -0.297 5.297 5 C 0.085 3.915 6 C -0.126 4.126 7 C -0.158 4.158 8 C -0.138 4.138 9 C -0.157 4.157 10 C -0.069 4.069 11 C -0.016 4.016 12 C 0.370 3.630 13 O -0.467 6.467 14 N -0.180 5.180 15 C -0.471 4.471 16 H 0.093 0.907 17 C -0.150 4.150 18 N -0.484 5.484 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.196 1.196 23 C 0.009 3.991 24 C -0.156 4.156 25 C 0.326 3.674 26 O -0.413 6.413 27 O -0.333 6.333 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.239 0.761 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.676 -3.149 3.055 5.139 hybrid contribution -0.470 -1.445 -0.778 1.707 sum -3.145 -4.593 2.277 6.014 Atomic orbital electron populations 1.21837 0.92323 1.04906 1.03680 1.20659 0.90346 0.83639 0.75838 1.90837 1.70086 1.30826 1.47848 1.43058 1.04781 1.09051 1.72811 1.17059 0.82799 0.97354 0.94269 1.19536 0.94221 1.01533 0.97356 1.20589 0.99027 0.98264 0.97930 1.20592 0.92523 1.00623 1.00013 1.20757 0.98862 0.98781 0.97343 1.20681 0.92932 0.97084 0.96164 1.19474 0.93074 0.96107 0.92896 1.17843 0.79194 0.85659 0.80272 1.90621 1.65683 1.15686 1.74756 1.43004 1.43019 1.08612 1.23328 1.18984 0.92949 0.80633 1.54583 0.90676 1.25471 0.95280 0.99023 0.95208 1.69786 0.99333 1.34882 1.44397 0.86462 0.78271 0.83787 0.79044 1.19970 1.20734 1.19553 1.21047 0.95069 0.97179 0.85766 1.21815 1.02150 1.00231 0.91418 1.24035 0.81698 0.79363 0.82302 1.90670 1.25527 1.43003 1.82127 1.84622 1.57947 1.67626 1.23117 0.90171 0.89467 0.89418 0.76057 0.91931 0.92385 0.92181 0.87079 0.87009 0.86765 0.91662 0.91714 0.90901 0.88034 0.87203 0.74242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.32 36.00 0.37 -1.96 16 2 C 0.51 9.89 6.37 -10.98 -0.07 9.82 16 3 O -0.52 -12.83 13.68 -13.33 -0.18 -13.02 16 4 N -0.65 -12.16 2.45 -9.67 -0.02 -12.19 16 5 C 0.18 3.75 4.33 -83.46 -0.36 3.39 16 6 C -0.12 -2.27 5.89 -104.48 -0.62 -2.89 16 7 C -0.10 -1.44 9.82 36.01 0.35 -1.08 16 8 C -0.12 -2.07 9.70 -39.53 -0.38 -2.46 16 9 C -0.14 -2.59 10.02 -39.63 -0.40 -2.99 16 10 C -0.05 -1.09 8.54 -39.18 -0.33 -1.42 16 11 C -0.01 -0.25 2.76 -104.81 -0.29 -0.54 16 12 C 0.58 15.01 3.65 -12.53 -0.05 14.96 16 13 O -0.58 -17.00 15.93 -13.64 -0.22 -17.22 16 14 N -0.46 -10.86 2.00 -116.04 -0.23 -11.09 16 15 C -0.34 -7.71 5.92 -14.99 -0.09 -7.80 16 16 H 0.08 1.61 7.84 -52.49 -0.41 1.20 16 17 C 0.06 1.33 3.59 -17.45 -0.06 1.26 16 18 N -0.85 -20.35 10.16 55.50 0.56 -19.79 16 19 Si 0.90 17.78 29.56 -169.99 -5.02 12.75 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 23 C 0.13 2.95 4.75 -4.04 -0.02 2.93 16 24 C -0.12 -2.32 6.11 -27.88 -0.17 -2.49 16 25 C 0.48 8.62 8.33 36.00 0.30 8.92 16 26 O -0.52 -10.50 16.74 -18.75 -0.31 -10.82 16 27 O -0.52 -7.52 13.42 -39.24 -0.53 -8.04 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.22 8.12 -51.93 -0.42 0.79 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.40 6.55 7.73 -40.82 -0.32 6.24 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.78 6.72 -51.93 -0.35 0.43 16 34 H 0.06 0.75 8.11 -51.92 -0.42 0.33 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.11 2.58 8.06 -52.48 -0.42 2.15 16 38 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 39 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 40 H 0.07 1.77 7.20 -51.93 -0.37 1.39 16 41 H 0.10 2.15 8.14 -51.93 -0.42 1.73 16 42 H 0.11 2.17 8.14 -51.93 -0.42 1.75 16 43 H 0.40 3.74 9.10 45.56 0.41 4.15 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -33.02 361.41 -7.14 -40.16 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -4.81 Total: 16.13 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: -1.81 Total: 17.67 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.31 Total: -43.07 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -1.24 Total: -49.09 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.02 Total: 12.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.02 -7.14 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589166314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.879 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds