Wall clock time and date at job start Tue Mar 31 2020 18:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21279 * 120.00326 * 2 1 4 4 N 1.34784 * 119.99832 * 180.02562 * 2 1 3 5 5 C 1.39300 * 119.99774 * 184.90232 * 4 2 1 6 6 C 1.38824 * 120.16639 * 127.93617 * 5 4 2 7 7 C 1.50702 * 119.96017 * 0.02562 * 6 5 4 8 8 C 1.38041 * 120.07531 * 179.97438 * 6 5 4 9 9 C 1.38572 * 120.41603 * 0.02579 * 8 6 5 10 10 C 1.37779 * 120.33719 * 0.24787 * 9 8 6 11 11 C 1.39754 * 119.91475 * 359.48162 * 10 9 8 12 12 C 1.47407 * 120.20075 * 180.26921 * 11 10 9 13 13 O 1.21629 * 120.00382 * 304.92965 * 12 11 10 14 14 N 1.34779 * 119.99937 * 124.93802 * 12 11 10 15 15 C 1.36906 * 119.99885 * 3.50941 * 14 12 11 16 16 H 1.07989 * 120.00130 * 125.39862 * 15 14 12 17 17 C 1.39029 * 119.99408 * 305.39912 * 15 14 12 18 18 N 1.31373 * 120.00506 * 354.89947 * 17 15 14 19 19 Si 1.86805 * 119.99585 * 174.90281 * 17 15 14 20 20 H 1.48495 * 109.47135 * 59.99783 * 19 17 15 21 21 H 1.48499 * 109.46896 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46790 * 300.00015 * 19 17 15 23 23 C 1.46501 * 120.00329 * 183.50970 * 14 12 11 24 24 C 1.53002 * 109.46960 * 94.52640 * 23 14 12 25 25 C 1.50694 * 109.46866 * 180.02562 * 24 23 14 26 26 O 1.20832 * 120.00333 * 359.97438 * 25 24 23 27 27 O 1.34224 * 119.99991 * 179.97438 * 25 24 23 28 28 H 1.09002 * 109.47033 * 240.00110 * 1 2 3 29 29 H 1.09002 * 109.47010 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47219 * 119.99608 * 1 2 3 31 31 H 0.96993 * 120.00156 * 4.90792 * 4 2 1 32 32 H 1.08994 * 109.46981 * 265.35161 * 7 6 5 33 33 H 1.09003 * 109.47389 * 25.35509 * 7 6 5 34 34 H 1.09007 * 109.46952 * 145.35264 * 7 6 5 35 35 H 1.08000 * 119.78536 * 180.02562 * 8 6 5 36 36 H 1.08002 * 119.83427 * 179.97438 * 9 8 6 37 37 H 1.08007 * 120.04087 * 179.71996 * 10 9 8 38 38 H 0.96996 * 120.00143 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47192 * 214.52473 * 23 14 12 40 40 H 1.09000 * 109.46539 * 334.52524 * 23 14 12 41 41 H 1.08998 * 109.47032 * 299.99931 * 24 23 14 42 42 H 1.08995 * 109.46985 * 59.99878 * 24 23 14 43 43 H 0.96704 * 117.00296 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5700 -1.1695 0.1026 6 6 4.1968 -1.9487 1.0655 7 6 3.3733 -2.7951 2.0017 8 6 5.5736 -1.9499 1.1656 9 6 6.3400 -1.1756 0.3093 10 6 5.7354 -0.3916 -0.6490 11 6 4.3429 -0.3842 -0.7664 12 6 3.6898 0.4477 -1.7933 13 8 3.9165 1.6417 -1.8433 14 7 2.8413 -0.1146 -2.6766 15 6 2.5304 -1.4441 -2.5760 16 1 1.4977 -1.7539 -2.5146 17 6 3.5441 -2.3952 -2.5528 18 7 4.7934 -2.0283 -2.7280 19 14 3.1299 -4.1951 -2.2725 20 1 2.2200 -4.6667 -3.3471 21 1 4.3782 -4.9991 -2.2919 22 1 2.4623 -4.3500 -0.9552 23 6 2.2518 0.6966 -3.7446 24 6 3.0981 0.5637 -5.0123 25 6 2.4921 1.3987 -6.1106 26 8 1.4862 2.0345 -5.9012 27 8 3.0697 1.4362 -7.3217 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6985 -2.0057 -0.0728 32 1 3.1961 -2.2464 2.9267 33 1 2.4189 -3.0332 1.5319 34 1 3.9093 -3.7180 2.2237 35 1 6.0564 -2.5582 1.9162 36 1 7.4165 -1.1834 0.3962 37 1 6.3372 0.2135 -1.3110 38 1 5.5006 -2.6918 -2.7114 39 1 1.2382 0.3504 -3.9465 40 1 2.2240 1.7411 -3.4341 41 1 4.1118 0.9099 -4.8104 42 1 3.1260 -0.4808 -5.3227 43 1 2.6446 1.9861 -7.9940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589166314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:38 Heat of formation + Delta-G solvation = -144.265084 kcal Electronic energy + Delta-G solvation = -31237.301790 eV Core-core repulsion = 27054.185069 eV Total energy + Delta-G solvation = -4183.116721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.84489 -41.26163 -39.68606 -39.05899 -37.23052 -36.63136 -35.46058 -34.28837 -33.11057 -32.01903 -31.42981 -29.54956 -27.43243 -26.94650 -26.05776 -23.96199 -22.63864 -21.83410 -21.38776 -20.90564 -19.25536 -18.81670 -18.37312 -17.86203 -17.64074 -17.23098 -17.05318 -16.72303 -16.31500 -15.98349 -15.55310 -15.29616 -15.02559 -14.81408 -14.52505 -14.34090 -14.21897 -14.13553 -13.92745 -13.43781 -13.35567 -13.20698 -13.02813 -13.00315 -12.72139 -12.65673 -12.59839 -12.44512 -12.35981 -12.21031 -12.02946 -11.96009 -11.69050 -11.01338 -10.84292 -10.54358 -10.30735 -9.34918 -9.11263 -8.80202 -8.11209 -6.03860 0.52990 0.65420 1.13775 1.48291 1.52813 1.59097 1.89242 1.97776 2.38650 2.46673 2.54842 3.01603 3.20997 3.33171 3.96625 4.04129 4.06003 4.13589 4.20025 4.39305 4.48262 4.52064 4.55549 4.63807 4.71572 4.76997 4.80286 4.90864 4.92050 4.93991 5.04605 5.08774 5.18408 5.41158 5.53756 5.55539 5.62479 5.69589 5.80047 5.93971 6.10511 6.36936 6.74860 6.75699 6.97028 7.15726 7.51912 7.72049 8.20442 8.91419 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.005612 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.023930 B = 4988.227717 C = 5340.684607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.497 3.503 3 O -0.581 6.581 4 N -0.639 5.639 5 C 0.163 3.837 6 C -0.124 4.124 7 C -0.100 4.100 8 C -0.114 4.114 9 C -0.136 4.136 10 C -0.080 4.080 11 C -0.044 4.044 12 C 0.570 3.430 13 O -0.639 6.639 14 N -0.456 5.456 15 C -0.352 4.352 16 H 0.089 0.911 17 C 0.033 3.967 18 N -0.873 5.873 19 Si 0.947 3.053 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.239 1.239 23 C 0.134 3.866 24 C -0.106 4.106 25 C 0.498 3.502 26 O -0.546 6.546 27 O -0.509 6.509 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.415 0.585 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.087 0.913 38 H 0.267 0.733 39 H 0.077 0.923 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.112 0.888 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.548 -7.676 3.988 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.287 3.713 3 O -0.461 6.461 4 N -0.286 5.286 5 C 0.069 3.931 6 C -0.126 4.126 7 C -0.157 4.157 8 C -0.132 4.132 9 C -0.154 4.154 10 C -0.099 4.099 11 C -0.049 4.049 12 C 0.362 3.638 13 O -0.527 6.527 14 N -0.176 5.176 15 C -0.480 4.480 16 H 0.107 0.893 17 C -0.174 4.174 18 N -0.506 5.506 19 Si 0.771 3.229 20 H -0.198 1.198 21 H -0.222 1.222 22 H -0.163 1.163 23 C 0.010 3.990 24 C -0.145 4.145 25 C 0.342 3.658 26 O -0.437 6.437 27 O -0.323 6.323 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.255 0.745 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.131 0.869 43 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -4.014 -6.504 4.281 8.760 hybrid contribution -0.002 -0.405 -1.230 1.296 sum -4.016 -6.909 3.051 8.554 Atomic orbital electron populations 1.21850 0.87906 1.05548 1.06349 1.21680 0.92469 0.82845 0.74291 1.90828 1.71712 1.32942 1.50602 1.43020 1.04129 1.09485 1.71998 1.17277 0.83673 0.97527 0.94666 1.20083 0.95136 1.00662 0.96768 1.20693 0.98961 0.98587 0.97414 1.21108 0.92451 0.99821 0.99844 1.21066 1.00496 0.97646 0.96222 1.20682 0.92745 0.98750 0.97758 1.19502 0.93843 0.97653 0.93874 1.18359 0.79376 0.85258 0.80807 1.90550 1.67765 1.18036 1.76366 1.43136 1.42181 1.09232 1.23004 1.19246 0.93624 0.79960 1.55132 0.89331 1.26052 0.94750 1.02163 0.94445 1.69960 1.00182 1.35660 1.44847 0.85675 0.77593 0.79116 0.80480 1.19823 1.22214 1.16281 1.21000 0.96105 0.95372 0.86518 1.21492 1.00626 1.00784 0.91590 1.23362 0.81040 0.78540 0.82892 1.90671 1.26508 1.43794 1.82757 1.84532 1.57490 1.67927 1.22344 0.85995 0.89977 0.87891 0.74547 0.90363 0.91521 0.89743 0.82834 0.84267 0.89424 0.92259 0.90460 0.94044 0.90119 0.86941 0.71105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.32 71.23 0.74 -3.33 16 2 C 0.50 19.27 6.37 87.65 0.56 19.82 16 3 O -0.58 -29.90 13.68 15.03 0.21 -29.70 16 4 N -0.64 -22.99 2.45 -302.91 -0.74 -23.74 16 5 C 0.16 6.70 4.33 38.60 0.17 6.87 16 6 C -0.12 -4.20 5.89 -19.77 -0.12 -4.31 16 7 C -0.10 -2.36 9.82 71.24 0.70 -1.66 16 8 C -0.11 -3.63 9.70 22.30 0.22 -3.42 16 9 C -0.14 -4.98 10.02 22.24 0.22 -4.75 16 10 C -0.08 -3.69 8.54 22.53 0.19 -3.50 16 11 C -0.04 -2.16 2.76 -19.99 -0.06 -2.22 16 12 C 0.57 31.21 3.65 86.66 0.32 31.52 16 13 O -0.64 -40.36 15.93 13.94 0.22 -40.14 16 14 N -0.46 -22.41 2.00 -639.27 -1.28 -23.68 16 15 C -0.35 -15.74 5.92 84.09 0.50 -15.24 16 16 H 0.09 3.66 7.84 -2.92 -0.02 3.64 16 17 C 0.03 1.45 3.59 84.95 0.31 1.75 16 18 N -0.87 -42.43 10.16 21.68 0.22 -42.21 16 19 Si 0.95 34.39 29.56 68.60 2.03 36.42 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 21 H -0.30 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.24 -7.45 7.11 99.48 0.71 -6.75 16 23 C 0.13 6.20 4.75 86.38 0.41 6.61 16 24 C -0.11 -4.35 6.11 29.85 0.18 -4.17 16 25 C 0.50 17.84 8.33 71.23 0.59 18.43 16 26 O -0.55 -21.99 16.74 21.95 0.37 -21.62 16 27 O -0.51 -13.99 13.42 -51.36 -0.69 -14.68 16 28 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 30 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.42 12.26 7.73 -92.71 -0.72 11.54 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.46 6.72 -2.39 -0.02 1.44 16 34 H 0.08 1.62 8.11 -2.38 -0.02 1.60 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.09 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 39 H 0.08 3.30 8.03 -2.39 -0.02 3.28 16 40 H 0.04 2.16 7.20 -2.39 -0.02 2.14 16 41 H 0.08 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.11 4.54 8.14 -2.39 -0.02 4.52 16 43 H 0.43 7.03 9.10 -74.05 -0.67 6.35 16 Total: -1.00 -78.04 361.41 4.94 -73.10 By element: Atomic # 1 Polarization: 44.15 SS G_CDS: -0.32 Total: 43.83 kcal Atomic # 6 Polarization: 37.49 SS G_CDS: 4.92 Total: 42.42 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -1.80 Total: -89.63 kcal Atomic # 8 Polarization: -106.24 SS G_CDS: 0.11 Total: -106.14 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Total: -78.04 4.94 -73.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589166314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.163 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds