Wall clock time and date at job start Tue Mar 31 2020 17:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37664 * 120.03831 * 2 1 4 4 C 1.39164 * 120.07725 * 179.97438 * 3 2 1 5 5 N 1.39247 * 119.92645 * 180.27913 * 4 3 2 6 6 C 1.34777 * 119.99852 * 145.82574 * 5 4 3 7 7 O 1.21360 * 120.00176 * 354.66114 * 6 5 4 8 8 C 1.49371 * 120.00113 * 174.65394 * 6 5 4 9 9 O 1.21359 * 119.99490 * 3.39100 * 8 6 5 10 10 N 1.34773 * 120.00152 * 183.39422 * 8 6 5 11 11 C 1.46495 * 120.00222 * 1.24969 * 10 8 6 12 12 C 1.46497 * 120.00107 * 181.25728 * 10 8 6 13 13 H 1.09010 * 109.47144 * 359.97438 * 12 10 8 14 14 C 1.52998 * 109.46961 * 240.00013 * 12 10 8 15 15 C 1.50698 * 109.47719 * 119.99428 * 12 10 8 16 16 H 1.07996 * 119.99638 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00201 * 180.02562 * 15 12 10 18 18 N 1.31513 * 119.99862 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99694 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47590 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46824 * 119.99753 * 19 17 15 22 22 H 1.48497 * 109.46850 * 239.99637 * 19 17 15 23 23 C 1.39218 * 120.14638 * 0.02562 * 4 3 2 24 24 C 1.37620 * 120.07437 * 359.97438 * 23 4 3 25 25 C 1.39793 * 120.03952 * 180.02562 * 2 1 3 26 26 C 1.47463 * 120.07075 * 0.02562 * 25 2 1 27 27 O 1.21507 * 120.00368 * 1.92958 * 26 25 2 28 28 O 1.34751 * 120.00087 * 181.92366 * 26 25 2 29 29 H 1.09000 * 109.46839 * 262.05868 * 1 2 3 30 30 H 1.08994 * 109.47148 * 22.05782 * 1 2 3 31 31 H 1.09001 * 109.47282 * 142.06051 * 1 2 3 32 32 H 1.08002 * 119.95678 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99985 * 325.83191 * 5 4 3 34 34 H 1.08998 * 109.47073 * 83.25215 * 11 10 8 35 35 H 1.09001 * 109.47655 * 203.25658 * 11 10 8 36 36 H 1.09005 * 109.47069 * 323.25308 * 11 10 8 37 37 H 1.09000 * 109.46910 * 299.99119 * 14 12 10 38 38 H 1.08993 * 109.47692 * 59.99455 * 14 12 10 39 39 H 1.09003 * 109.47494 * 179.97438 * 14 12 10 40 40 H 0.97002 * 119.99784 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.96307 * 180.02562 * 23 4 3 42 42 H 1.07995 * 120.03318 * 179.97438 * 24 23 4 43 43 H 0.96693 * 117.00429 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1917 0.0000 4 6 3.5877 1.1927 0.0005 5 7 4.2816 2.4000 0.0064 6 6 5.4544 2.4999 0.6630 7 8 5.8584 1.5692 1.3288 8 6 6.2571 3.7563 0.5710 9 8 5.8247 4.7089 -0.0441 10 7 7.4615 3.8320 1.1711 11 6 7.9955 2.6729 1.8905 12 6 8.2365 5.0733 1.1042 13 1 7.6824 5.8173 0.5317 14 6 9.5782 4.8006 0.4213 15 6 8.4786 5.5903 2.4989 16 1 8.0932 5.0486 3.3500 17 6 9.1911 6.7555 2.6883 18 7 9.6599 7.4153 1.6518 19 14 9.4917 7.3958 4.4171 20 1 8.8655 6.4769 5.4013 21 1 10.9531 7.4713 4.6699 22 1 8.8950 8.7487 4.5545 23 6 4.2877 -0.0107 0.0005 24 6 3.6050 -1.2056 0.0005 25 6 2.2068 -1.2102 -0.0005 26 6 1.4719 -2.4886 -0.0017 27 8 0.2574 -2.4913 -0.0376 28 8 2.1473 -3.6540 0.0370 29 1 -0.3633 -0.1420 1.0178 30 1 -0.3633 0.9524 -0.3859 31 1 -0.3634 -0.8105 -0.6318 32 1 1.6560 2.1270 -0.0004 33 1 3.9209 3.1690 -0.4619 34 1 8.4764 1.9967 1.1837 35 1 8.7256 3.0074 2.6276 36 1 7.1819 2.1522 2.3955 37 1 10.1325 4.0567 0.9935 38 1 9.4032 4.4267 -0.5874 39 1 10.1548 5.7243 0.3711 40 1 10.1615 8.2349 1.7850 41 1 5.3677 -0.0065 0.0014 42 1 4.1487 -2.1388 0.0001 43 1 1.6223 -4.4660 0.0349 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594313607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:45 Heat of formation + Delta-G solvation = -113.059216 kcal Electronic energy + Delta-G solvation = -28154.238680 eV Core-core repulsion = 23972.475147 eV Total energy + Delta-G solvation = -4181.763533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22939 -40.55856 -39.15432 -37.97811 -36.49156 -35.99710 -34.91889 -32.84269 -32.73974 -30.60868 -29.58753 -27.55205 -26.43509 -25.47339 -25.24237 -23.50476 -22.69750 -21.71562 -20.33334 -19.47856 -18.39953 -17.71900 -17.53093 -17.14180 -16.44466 -16.11430 -15.98361 -15.85271 -15.31044 -15.02958 -14.75218 -14.47057 -13.99414 -13.83235 -13.70528 -13.40370 -13.24864 -12.95102 -12.64441 -12.51379 -12.45482 -12.38844 -11.94258 -11.83886 -11.70090 -11.50430 -11.16565 -10.93521 -10.84560 -10.72861 -10.58023 -10.41594 -10.33922 -10.26289 -9.29298 -9.14645 -8.90489 -8.53342 -8.50786 -7.83132 -6.17742 -4.26268 0.30925 1.07237 1.62991 2.28521 2.50066 2.75898 3.21290 3.29596 3.32976 3.39541 3.61261 3.86554 4.31483 4.44772 4.49937 4.64589 4.78937 4.89016 5.10524 5.14047 5.14927 5.43632 5.50561 5.57692 5.76082 5.89982 5.92332 5.98705 6.07858 6.12722 6.17162 6.32977 6.50716 6.58090 6.66592 6.69544 6.87886 6.95220 7.15775 7.31226 7.59339 7.61449 7.71295 7.88698 8.01880 8.25635 8.48607 8.78931 9.40273 10.87785 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.026125 B = 0.002256 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.508554 B =12408.663247 C =12593.541530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.007 3.993 3 C -0.164 4.164 4 C 0.201 3.799 5 N -0.654 5.654 6 C 0.511 3.489 7 O -0.492 6.492 8 C 0.493 3.507 9 O -0.535 6.535 10 N -0.548 5.548 11 C 0.064 3.936 12 C 0.254 3.746 13 H 0.067 0.933 14 C -0.147 4.147 15 C -0.529 4.529 16 H 0.063 0.937 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.146 4.146 24 C -0.032 4.032 25 C -0.162 4.162 26 C 0.531 3.469 27 O -0.515 6.515 28 O -0.514 6.514 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.426 0.574 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.013 0.987 39 H 0.097 0.903 40 H 0.264 0.736 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.188 -17.643 -4.612 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 C -0.184 4.184 4 C 0.105 3.895 5 N -0.300 5.300 6 C 0.295 3.705 7 O -0.365 6.365 8 C 0.273 3.727 9 O -0.414 6.414 10 N -0.278 5.278 11 C -0.079 4.079 12 C 0.154 3.846 13 H 0.085 0.915 14 C -0.205 4.205 15 C -0.568 4.568 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.524 5.524 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.166 4.166 24 C -0.051 4.051 25 C -0.164 4.164 26 C 0.377 3.623 27 O -0.406 6.406 28 O -0.325 6.325 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.157 0.843 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.032 0.968 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -12.965 -17.193 -4.486 21.996 hybrid contribution -0.147 0.237 0.771 0.820 sum -13.113 -16.956 -3.714 21.754 Atomic orbital electron populations 1.21210 0.89595 1.03692 1.03918 1.19749 0.96716 0.90516 0.92404 1.20781 0.91796 0.98543 1.07310 1.18046 0.90976 0.85906 0.94585 1.43351 1.21760 1.12901 1.52005 1.21102 0.81172 0.89582 0.78608 1.90659 1.68607 1.40131 1.37079 1.19509 0.83519 0.87010 0.82664 1.90733 1.70036 1.37715 1.42902 1.48294 1.16008 1.16166 1.47338 1.22253 1.01258 0.87293 0.97102 1.19209 0.88325 0.79442 0.97581 0.91531 1.22094 0.99598 1.02859 0.95967 1.21308 1.35277 1.08578 0.91599 0.91884 1.24890 0.95153 0.96193 0.97444 1.69881 1.36255 1.16919 1.29328 0.86383 0.77937 0.78871 0.83908 1.19698 1.20817 1.20831 1.21166 1.01566 0.90369 1.03544 1.21284 0.92338 0.98594 0.92866 1.18807 0.93537 0.89784 1.14239 1.20825 0.85403 0.84203 0.71883 1.90827 1.15046 1.87713 1.46977 1.84581 1.45137 1.16975 1.85847 0.90470 0.91746 0.88258 0.84322 0.73516 0.93534 0.90223 0.88906 0.94777 0.96807 0.88456 0.92561 0.83744 0.84019 0.72891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.81 36.01 0.32 -0.82 16 2 C 0.01 0.07 5.91 -104.25 -0.62 -0.54 16 3 C -0.16 -1.66 9.57 -39.45 -0.38 -2.03 16 4 C 0.20 2.37 6.26 -83.78 -0.52 1.84 16 5 N -0.65 -8.40 5.30 -10.28 -0.05 -8.46 16 6 C 0.51 8.18 7.52 -11.62 -0.09 8.09 16 7 O -0.49 -8.07 10.80 5.49 0.06 -8.01 16 8 C 0.49 9.72 7.74 -11.62 -0.09 9.63 16 9 O -0.53 -11.70 15.81 5.49 0.09 -11.62 16 10 N -0.55 -11.53 2.75 -175.81 -0.48 -12.01 16 11 C 0.06 1.14 8.51 59.84 0.51 1.65 16 12 C 0.25 6.24 2.62 -69.09 -0.18 6.06 16 13 H 0.07 1.86 6.90 -51.92 -0.36 1.50 16 14 C -0.15 -3.39 8.97 37.16 0.33 -3.05 16 15 C -0.53 -13.86 7.95 -34.44 -0.27 -14.14 16 16 H 0.06 1.64 7.45 -52.49 -0.39 1.25 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 19 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.15 -1.70 8.62 -39.44 -0.34 -2.04 16 24 C -0.03 -0.32 9.60 -39.21 -0.38 -0.70 16 25 C -0.16 -1.69 5.88 -104.96 -0.62 -2.30 16 26 C 0.53 5.22 8.24 34.49 0.28 5.51 16 27 O -0.51 -5.93 14.02 -19.27 -0.27 -6.20 16 28 O -0.51 -3.63 12.67 -40.63 -0.51 -4.15 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.46 8.02 -51.93 -0.42 0.05 16 31 H 0.10 0.99 5.70 -51.93 -0.30 0.69 16 32 H 0.14 1.13 8.05 -52.49 -0.42 0.70 16 33 H 0.43 4.86 8.29 -40.82 -0.34 4.52 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.48 7.13 -51.93 -0.37 1.11 16 36 H 0.09 1.60 5.30 -51.98 -0.28 1.33 16 37 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 40 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.14 1.78 6.45 -52.49 -0.34 1.44 16 42 H 0.14 1.18 7.60 -52.49 -0.40 0.78 16 43 H 0.41 1.04 9.11 45.56 0.42 1.46 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -31.17 361.51 -6.56 -37.73 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.31 Total: 6.54 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -2.13 Total: 8.80 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.09 Total: -44.05 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.64 Total: -29.98 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.17 -6.56 -37.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594313607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.325 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds