Wall clock time and date at job start Tue Mar 31 2020 17:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37664 * 120.03831 * 2 1 4 4 C 1.39164 * 120.07725 * 179.97438 * 3 2 1 5 5 N 1.39247 * 119.92645 * 180.27913 * 4 3 2 6 6 C 1.34777 * 119.99852 * 145.82574 * 5 4 3 7 7 O 1.21360 * 120.00176 * 354.66114 * 6 5 4 8 8 C 1.49371 * 120.00113 * 174.65394 * 6 5 4 9 9 O 1.21359 * 119.99490 * 3.39100 * 8 6 5 10 10 N 1.34773 * 120.00152 * 183.39422 * 8 6 5 11 11 C 1.46495 * 120.00222 * 1.24969 * 10 8 6 12 12 C 1.46497 * 120.00107 * 181.25728 * 10 8 6 13 13 H 1.09010 * 109.47144 * 359.97438 * 12 10 8 14 14 C 1.52998 * 109.46961 * 240.00013 * 12 10 8 15 15 C 1.50698 * 109.47719 * 119.99428 * 12 10 8 16 16 H 1.07996 * 119.99638 * 359.97438 * 15 12 10 17 17 C 1.37880 * 120.00201 * 180.02562 * 15 12 10 18 18 N 1.31513 * 119.99862 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99694 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47590 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46824 * 119.99753 * 19 17 15 22 22 H 1.48497 * 109.46850 * 239.99637 * 19 17 15 23 23 C 1.39218 * 120.14638 * 0.02562 * 4 3 2 24 24 C 1.37620 * 120.07437 * 359.97438 * 23 4 3 25 25 C 1.39793 * 120.03952 * 180.02562 * 2 1 3 26 26 C 1.47463 * 120.07075 * 0.02562 * 25 2 1 27 27 O 1.21507 * 120.00368 * 1.92958 * 26 25 2 28 28 O 1.34751 * 120.00087 * 181.92366 * 26 25 2 29 29 H 1.09000 * 109.46839 * 262.05868 * 1 2 3 30 30 H 1.08994 * 109.47148 * 22.05782 * 1 2 3 31 31 H 1.09001 * 109.47282 * 142.06051 * 1 2 3 32 32 H 1.08002 * 119.95678 * 359.97438 * 3 2 1 33 33 H 0.97000 * 119.99985 * 325.83191 * 5 4 3 34 34 H 1.08998 * 109.47073 * 83.25215 * 11 10 8 35 35 H 1.09001 * 109.47655 * 203.25658 * 11 10 8 36 36 H 1.09005 * 109.47069 * 323.25308 * 11 10 8 37 37 H 1.09000 * 109.46910 * 299.99119 * 14 12 10 38 38 H 1.08993 * 109.47692 * 59.99455 * 14 12 10 39 39 H 1.09003 * 109.47494 * 179.97438 * 14 12 10 40 40 H 0.97002 * 119.99784 * 180.02562 * 18 17 15 41 41 H 1.08001 * 119.96307 * 180.02562 * 23 4 3 42 42 H 1.07995 * 120.03318 * 179.97438 * 24 23 4 43 43 H 0.96693 * 117.00429 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1917 0.0000 4 6 3.5877 1.1927 0.0005 5 7 4.2816 2.4000 0.0064 6 6 5.4544 2.4999 0.6630 7 8 5.8584 1.5692 1.3288 8 6 6.2571 3.7563 0.5710 9 8 5.8247 4.7089 -0.0441 10 7 7.4615 3.8320 1.1711 11 6 7.9955 2.6729 1.8905 12 6 8.2365 5.0733 1.1042 13 1 7.6824 5.8173 0.5317 14 6 9.5782 4.8006 0.4213 15 6 8.4786 5.5903 2.4989 16 1 8.0932 5.0486 3.3500 17 6 9.1911 6.7555 2.6883 18 7 9.6599 7.4153 1.6518 19 14 9.4917 7.3958 4.4171 20 1 8.8655 6.4769 5.4013 21 1 10.9531 7.4713 4.6699 22 1 8.8950 8.7487 4.5545 23 6 4.2877 -0.0107 0.0005 24 6 3.6050 -1.2056 0.0005 25 6 2.2068 -1.2102 -0.0005 26 6 1.4719 -2.4886 -0.0017 27 8 0.2574 -2.4913 -0.0376 28 8 2.1473 -3.6540 0.0370 29 1 -0.3633 -0.1420 1.0178 30 1 -0.3633 0.9524 -0.3859 31 1 -0.3634 -0.8105 -0.6318 32 1 1.6560 2.1270 -0.0004 33 1 3.9209 3.1690 -0.4619 34 1 8.4764 1.9967 1.1837 35 1 8.7256 3.0074 2.6276 36 1 7.1819 2.1522 2.3955 37 1 10.1325 4.0567 0.9935 38 1 9.4032 4.4267 -0.5874 39 1 10.1548 5.7243 0.3711 40 1 10.1615 8.2349 1.7850 41 1 5.3677 -0.0065 0.0014 42 1 4.1487 -2.1388 0.0001 43 1 1.6223 -4.4660 0.0349 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594313607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:44 Heat of formation + Delta-G solvation = -133.559958 kcal Electronic energy + Delta-G solvation = -28155.127659 eV Core-core repulsion = 23972.475147 eV Total energy + Delta-G solvation = -4182.652512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.35259 -41.47485 -40.32502 -39.18273 -37.60533 -37.14823 -36.16062 -34.71247 -33.52857 -31.60702 -31.37080 -28.32153 -27.89551 -27.34598 -26.64240 -24.58525 -23.54196 -22.90925 -21.56477 -20.84426 -19.20848 -18.95323 -18.54260 -18.32363 -18.18116 -17.55330 -17.17510 -16.85619 -16.69063 -16.33445 -15.99888 -15.49749 -15.23539 -15.02272 -14.61656 -14.57487 -14.41893 -14.13911 -13.97601 -13.77163 -13.56270 -13.39272 -13.30850 -13.16038 -13.02094 -12.75612 -12.72610 -12.51099 -12.33483 -12.24575 -12.23127 -12.10002 -11.56618 -11.22197 -11.17724 -10.59383 -10.36549 -9.89423 -9.57354 -9.39661 -8.18189 -6.34211 -0.57555 0.26801 0.33469 1.19179 1.41609 1.44012 1.49457 1.55359 2.08105 2.11676 2.37599 2.55454 2.66155 3.10731 3.21606 3.67137 3.75004 4.03107 4.08149 4.24277 4.38416 4.50100 4.69735 4.71493 4.72862 4.81193 4.81670 4.86985 4.90556 4.98794 5.04231 5.12235 5.17147 5.29251 5.38150 5.39884 5.44443 5.61194 5.66326 5.76489 5.84751 5.96673 6.09162 6.43560 6.61115 6.71950 6.95326 7.01588 7.36546 8.86720 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.026125 B = 0.002256 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.508554 B =12408.663247 C =12593.541530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.001 3.999 3 C -0.155 4.155 4 C 0.181 3.819 5 N -0.638 5.638 6 C 0.523 3.477 7 O -0.496 6.496 8 C 0.487 3.513 9 O -0.563 6.563 10 N -0.560 5.560 11 C 0.069 3.931 12 C 0.258 3.742 13 H 0.024 0.976 14 C -0.134 4.134 15 C -0.542 4.542 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.913 5.913 19 Si 0.965 3.035 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.283 1.283 23 C -0.155 4.155 24 C -0.027 4.027 25 C -0.167 4.167 26 C 0.534 3.466 27 O -0.534 6.534 28 O -0.507 6.507 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.432 0.568 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.266 0.734 41 H 0.137 0.863 42 H 0.159 0.841 43 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 -19.330 -3.963 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.001 4.001 3 C -0.175 4.175 4 C 0.086 3.914 5 N -0.285 5.285 6 C 0.306 3.694 7 O -0.370 6.370 8 C 0.269 3.731 9 O -0.444 6.444 10 N -0.289 5.289 11 C -0.073 4.073 12 C 0.157 3.843 13 H 0.042 0.958 14 C -0.192 4.192 15 C -0.580 4.580 16 H 0.079 0.921 17 C -0.180 4.180 18 N -0.551 5.551 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.209 1.209 23 C -0.175 4.175 24 C -0.046 4.046 25 C -0.169 4.169 26 C 0.381 3.619 27 O -0.427 6.427 28 O -0.321 6.321 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.177 0.823 33 H 0.272 0.728 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -13.893 -18.944 -3.848 23.805 hybrid contribution 0.038 0.649 0.502 0.822 sum -13.855 -18.294 -3.345 23.191 Atomic orbital electron populations 1.21183 0.88648 1.04376 1.03785 1.19975 0.97456 0.90489 0.92138 1.20956 0.91067 0.99501 1.05957 1.18177 0.91600 0.85190 0.96424 1.43116 1.20531 1.13758 1.51072 1.20165 0.81896 0.87871 0.79436 1.90651 1.69077 1.39591 1.37718 1.20123 0.83254 0.88143 0.81602 1.90708 1.70583 1.39259 1.43846 1.48246 1.16566 1.15901 1.48229 1.22341 1.01426 0.86334 0.97160 1.18833 0.88693 0.80330 0.96435 0.95765 1.21896 0.98628 1.02010 0.96707 1.21531 1.35300 1.08965 0.92199 0.92137 1.25672 0.94947 0.96401 1.01016 1.70001 1.36720 1.17244 1.31172 0.85406 0.78040 0.77999 0.79579 1.19169 1.20005 1.20903 1.21190 1.01334 0.90934 1.04054 1.21413 0.92309 0.98768 0.92105 1.19046 0.93813 0.90476 1.13553 1.20702 0.85013 0.84714 0.71469 1.90830 1.15805 1.88116 1.47939 1.84532 1.45223 1.17258 1.85113 0.90486 0.89913 0.89188 0.82310 0.72765 0.91691 0.91040 0.87951 0.93526 0.95649 0.90783 0.92424 0.84548 0.82299 0.70493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 8.81 71.24 0.63 -1.34 16 2 C 0.00 0.01 5.91 -19.62 -0.12 -0.11 16 3 C -0.15 -2.81 9.57 22.36 0.21 -2.60 16 4 C 0.18 3.98 6.26 38.42 0.24 4.22 16 5 N -0.64 -15.74 5.30 -304.80 -1.62 -17.36 16 6 C 0.52 16.36 7.52 87.24 0.66 17.02 16 7 O -0.50 -15.69 10.80 -3.28 -0.04 -15.72 16 8 C 0.49 19.35 7.74 87.25 0.68 20.02 16 9 O -0.56 -25.24 15.81 -3.27 -0.05 -25.30 16 10 N -0.56 -23.67 2.75 -828.48 -2.28 -25.95 16 11 C 0.07 2.42 8.51 127.77 1.09 3.51 16 12 C 0.26 12.98 2.62 44.24 0.12 13.10 16 13 H 0.02 1.42 6.90 -2.38 -0.02 1.41 16 14 C -0.13 -6.25 8.97 71.98 0.65 -5.61 16 15 C -0.54 -28.70 7.95 25.60 0.20 -28.50 16 16 H 0.06 3.16 7.45 -2.91 -0.02 3.14 16 17 C 0.02 1.06 5.30 84.66 0.45 1.51 16 18 N -0.91 -50.72 11.32 21.45 0.24 -50.48 16 19 Si 0.96 42.09 29.54 68.60 2.03 44.11 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 C -0.16 -3.38 8.62 22.36 0.19 -3.18 16 24 C -0.03 -0.50 9.60 22.51 0.22 -0.28 16 25 C -0.17 -3.16 5.88 -20.09 -0.12 -3.28 16 26 C 0.53 9.46 8.24 70.25 0.58 10.03 16 27 O -0.53 -11.44 14.02 19.81 0.28 -11.16 16 28 O -0.51 -5.90 12.67 -56.62 -0.72 -6.62 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.08 0.98 8.02 -2.39 -0.02 0.96 16 31 H 0.09 1.65 5.70 -2.39 -0.01 1.63 16 32 H 0.16 2.17 8.05 -2.91 -0.02 2.14 16 33 H 0.43 9.50 8.29 -92.71 -0.77 8.73 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.60 7.13 -2.39 -0.02 2.59 16 36 H 0.10 3.41 5.30 -3.23 -0.02 3.39 16 37 H 0.05 2.00 7.67 -2.39 -0.02 1.98 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 40 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 41 H 0.14 3.20 6.45 -2.91 -0.02 3.18 16 42 H 0.16 2.28 7.60 -2.91 -0.02 2.26 16 43 H 0.43 1.05 9.11 -74.06 -0.67 0.38 16 Total: -1.00 -67.16 361.51 3.16 -64.00 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.35 Total: 19.95 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 5.67 Total: 24.52 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.65 Total: -93.78 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -0.53 Total: -58.79 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -67.16 3.16 -64.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594313607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.563 kcal (2) G-P(sol) polarization free energy of solvation -67.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds