Wall clock time and date at job start Tue Mar 31 2020 17:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47329 * 2 1 4 4 N 1.46506 * 109.47380 * 119.99888 * 2 1 3 5 5 C 1.34771 * 120.00025 * 154.99767 * 4 2 1 6 6 O 1.21287 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99906 * 179.97438 * 5 4 2 8 8 O 1.45203 * 109.47099 * 180.02562 * 7 5 4 9 9 C 1.34752 * 117.00007 * 180.02562 * 8 7 5 10 10 O 1.21508 * 119.99761 * 0.02562 * 9 8 7 11 11 C 1.47454 * 120.00128 * 179.97438 * 9 8 7 12 12 C 1.39837 * 120.06990 * 179.97438 * 11 9 8 13 13 C 1.37609 * 119.93410 * 180.30203 * 12 11 9 14 14 C 1.39270 * 120.06646 * 359.45096 * 13 12 11 15 15 N 1.39071 * 119.93422 * 180.26140 * 14 13 12 16 16 C 1.34777 * 120.00137 * 213.69894 * 15 14 13 17 17 O 1.21731 * 119.99576 * 5.12320 * 16 15 14 18 18 C 1.46190 * 120.00364 * 185.11991 * 16 15 14 19 19 H 1.08005 * 120.00142 * 6.08914 * 18 16 15 20 20 C 1.40123 * 120.00102 * 186.08440 * 18 16 15 21 21 N 1.30632 * 120.00354 * 353.81719 * 20 18 16 22 22 Si 1.86808 * 120.00067 * 173.81851 * 20 18 16 23 23 H 1.48502 * 109.46912 * 94.98279 * 22 20 18 24 24 H 1.48494 * 109.47248 * 214.98750 * 22 20 18 25 25 H 1.48505 * 109.46724 * 334.98478 * 22 20 18 26 26 C 1.39278 * 120.13416 * 0.55224 * 14 13 12 27 27 C 1.37606 * 120.06700 * 359.72642 * 26 14 13 28 28 H 1.09000 * 109.46997 * 300.00134 * 1 2 3 29 29 H 1.09002 * 109.47089 * 59.99946 * 1 2 3 30 30 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46997 * 239.99866 * 2 1 3 32 32 H 1.08995 * 109.47257 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46566 * 299.99967 * 3 2 1 34 34 H 1.09003 * 109.47292 * 59.99454 * 3 2 1 35 35 H 0.96999 * 119.99710 * 334.99764 * 4 2 1 36 36 H 1.08998 * 109.46816 * 60.00740 * 7 5 4 37 37 H 1.08994 * 109.47444 * 300.00234 * 7 5 4 38 38 H 1.07996 * 120.03343 * 0.03080 * 12 11 9 39 39 H 1.07996 * 119.96415 * 179.70302 * 13 12 11 40 40 H 0.96996 * 120.00165 * 33.69083 * 15 14 13 41 41 H 0.97003 * 120.00711 * 179.97438 * 21 20 18 42 42 H 1.08003 * 119.96796 * 179.71020 * 26 14 13 43 43 H 1.07997 * 120.03340 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1944 6 8 3.9358 -1.1987 0.2026 7 6 3.7429 -1.9690 2.4251 8 8 5.0742 -2.4911 2.1729 9 6 5.6704 -3.1587 3.1802 10 8 5.0934 -3.3012 4.2400 11 6 7.0225 -3.7174 2.9959 12 6 7.6428 -4.4100 4.0404 13 6 8.9071 -4.9249 3.8675 14 6 9.5645 -4.7666 2.6499 15 7 10.8400 -5.2927 2.4763 16 6 11.7319 -4.6536 1.6937 17 8 11.4540 -3.5698 1.2141 18 6 13.0330 -5.2617 1.4209 19 1 13.2431 -6.2642 1.7636 20 6 14.0076 -4.5441 0.7146 21 7 13.7147 -3.3817 0.1956 22 14 15.7257 -5.2499 0.5151 23 1 15.8192 -5.9654 -0.7827 24 1 16.7202 -4.1476 0.5456 25 1 16.0032 -6.1977 1.6242 26 6 8.9494 -4.0772 1.6077 27 6 7.6874 -3.5551 1.7765 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9562 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.4623 -0.7386 1.9895 36 1 3.0704 -2.7910 2.6704 37 1 3.7797 -1.2684 3.2591 38 1 7.1318 -4.5370 4.9833 39 1 9.3885 -5.4557 4.6754 40 1 11.0879 -6.1196 2.9186 41 1 14.3894 -2.8847 -0.2930 42 1 9.4635 -3.9520 0.6661 43 1 7.2111 -3.0203 0.9681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003429181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:21 Heat of formation + Delta-G solvation = -138.189173 kcal Electronic energy + Delta-G solvation = -27060.052159 eV Core-core repulsion = 22877.198909 eV Total energy + Delta-G solvation = -4182.853250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65612 -39.83798 -39.07944 -37.06260 -36.48170 -35.95015 -33.65539 -32.58667 -32.22868 -30.57230 -29.83027 -28.36570 -27.64728 -26.48027 -23.69197 -22.31864 -22.02747 -21.01425 -20.85367 -19.79355 -18.12538 -17.78377 -17.30137 -16.81853 -16.72088 -16.38178 -16.00687 -15.58108 -15.19958 -14.58072 -14.50998 -14.33831 -14.03408 -13.78702 -13.54906 -13.21085 -12.97862 -12.96350 -12.79394 -12.68061 -12.62799 -12.54478 -12.02523 -11.90083 -11.80557 -11.39051 -11.36590 -11.14869 -10.86193 -10.81759 -10.66656 -10.45357 -10.40427 -10.07133 -9.50852 -9.49925 -8.98526 -8.60931 -7.88283 -7.30894 -6.44554 -4.91381 1.11893 1.88120 2.15188 2.28625 2.80476 3.03143 3.10457 3.14197 3.18649 3.91818 4.13034 4.25944 4.44774 4.45153 4.48657 4.60787 4.77212 4.81474 4.83704 5.02016 5.14202 5.25174 5.26569 5.35826 5.37344 5.49756 5.51608 5.66811 5.78186 5.87434 5.91665 6.07877 6.10324 6.23567 6.46191 6.67660 6.80568 6.90690 7.06501 7.17539 7.22673 7.59440 7.83658 7.88168 7.90168 8.03602 8.75801 9.05038 10.25334 10.46000 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.002000 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.927943 B =13996.965685 C =15292.131995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 C -0.166 4.166 4 N -0.727 5.727 5 C 0.515 3.485 6 O -0.509 6.509 7 C 0.049 3.951 8 O -0.329 6.329 9 C 0.521 3.479 10 O -0.525 6.525 11 C -0.189 4.189 12 C -0.025 4.025 13 C -0.195 4.195 14 C 0.238 3.762 15 N -0.693 5.693 16 C 0.538 3.462 17 O -0.554 6.554 18 C -0.536 4.536 19 H 0.074 0.926 20 C 0.086 3.914 21 N -0.755 5.755 22 Si 0.914 3.086 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.149 4.149 27 C -0.034 4.034 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.401 0.599 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.397 0.603 41 H 0.274 0.726 42 H 0.147 0.853 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.683 3.151 3.755 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 C -0.224 4.224 4 N -0.382 5.382 5 C 0.300 3.700 6 O -0.383 6.383 7 C -0.028 4.028 8 O -0.245 6.245 9 C 0.369 3.631 10 O -0.416 6.416 11 C -0.192 4.192 12 C -0.044 4.044 13 C -0.217 4.217 14 C 0.136 3.864 15 N -0.335 5.335 16 C 0.345 3.655 17 O -0.436 6.436 18 C -0.572 4.572 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.382 5.382 22 Si 0.738 3.262 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.170 4.170 27 C -0.053 4.053 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.165 0.835 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.338 4.095 2.782 22.880 hybrid contribution 0.555 -0.648 0.741 1.129 sum -21.783 3.447 3.522 22.334 Atomic orbital electron populations 1.22080 0.93902 1.02739 1.03066 1.20974 0.93997 0.93130 0.88560 1.22206 1.02487 0.95556 1.02163 1.45951 1.17501 1.57469 1.17273 1.20149 0.81731 0.78984 0.89170 1.90789 1.55394 1.57795 1.34294 1.22574 0.83978 0.99699 0.96592 1.86662 1.29528 1.66113 1.42186 1.21349 0.86456 0.74473 0.80791 1.90785 1.65615 1.57701 1.27464 1.18705 0.92329 1.10354 0.97821 1.20805 0.93511 0.92912 0.97200 1.20814 0.96621 1.07948 0.96318 1.18322 0.85272 0.90977 0.91831 1.44323 1.10095 1.27256 1.51793 1.18476 0.84109 0.84904 0.78002 1.90663 1.78128 1.21804 1.52964 1.20863 0.97029 1.02029 1.37263 0.90758 1.25761 1.00313 0.94288 0.93258 1.69974 1.34230 1.10758 1.23282 0.86245 0.81232 0.79330 0.79410 1.19574 1.20168 1.18650 1.21356 0.94028 1.01316 1.00296 1.21319 0.93660 0.94705 0.95622 0.91991 0.90742 0.91872 0.89161 0.91800 0.91465 0.92426 0.76490 0.88220 0.88208 0.85190 0.85422 0.76877 0.91527 0.83501 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.38 37.16 0.35 -0.31 16 2 C 0.14 0.96 3.18 -67.93 -0.22 0.74 16 3 C -0.17 -1.17 9.48 37.16 0.35 -0.81 16 4 N -0.73 -5.24 5.08 -53.80 -0.27 -5.51 16 5 C 0.51 5.78 7.87 -10.99 -0.09 5.69 16 6 O -0.51 -8.13 16.17 -14.11 -0.23 -8.36 16 7 C 0.05 0.53 5.95 36.01 0.21 0.74 16 8 O -0.33 -5.00 9.00 -47.32 -0.43 -5.42 16 9 C 0.52 8.42 7.89 34.48 0.27 8.70 16 10 O -0.52 -8.75 16.13 -19.27 -0.31 -9.06 16 11 C -0.19 -3.24 5.88 -104.95 -0.62 -3.86 16 12 C -0.03 -0.40 9.58 -39.21 -0.38 -0.78 16 13 C -0.20 -3.25 9.94 -39.43 -0.39 -3.64 16 14 C 0.24 4.77 6.27 -83.81 -0.53 4.24 16 15 N -0.69 -14.77 5.30 -11.19 -0.06 -14.83 16 16 C 0.54 14.35 7.46 -13.07 -0.10 14.25 16 17 O -0.55 -16.77 12.70 5.16 0.07 -16.71 16 18 C -0.54 -14.13 9.53 -35.68 -0.34 -14.47 16 19 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 20 C 0.09 2.25 5.50 -17.35 -0.10 2.16 16 21 N -0.75 -21.43 11.85 55.55 0.66 -20.77 16 22 Si 0.91 19.00 29.56 -169.99 -5.03 13.97 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 26 C -0.15 -3.10 8.62 -39.43 -0.34 -3.44 16 27 C -0.03 -0.62 9.60 -39.21 -0.38 -0.99 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.40 1.60 8.60 -40.82 -0.35 1.25 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.13 1.84 7.64 -52.49 -0.40 1.44 16 39 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.40 7.08 8.79 -40.82 -0.36 6.72 16 41 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 42 H 0.15 3.47 6.39 -52.48 -0.34 3.13 16 43 H 0.13 2.32 7.60 -52.49 -0.40 1.92 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -35.56 379.18 -7.75 -43.31 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.59 Total: 9.46 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.28 Total: 8.21 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.33 Total: -41.11 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.90 Total: -39.55 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.56 -7.75 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003429181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.884 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds