Wall clock time and date at job start Tue Mar 31 2020 17:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47329 * 2 1 4 4 N 1.46506 * 109.47380 * 119.99888 * 2 1 3 5 5 C 1.34771 * 120.00025 * 154.99767 * 4 2 1 6 6 O 1.21287 * 120.00047 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99906 * 179.97438 * 5 4 2 8 8 O 1.45203 * 109.47099 * 180.02562 * 7 5 4 9 9 C 1.34752 * 117.00007 * 180.02562 * 8 7 5 10 10 O 1.21508 * 119.99761 * 0.02562 * 9 8 7 11 11 C 1.47454 * 120.00128 * 179.97438 * 9 8 7 12 12 C 1.39837 * 120.06990 * 179.97438 * 11 9 8 13 13 C 1.37609 * 119.93410 * 180.30203 * 12 11 9 14 14 C 1.39270 * 120.06646 * 359.45096 * 13 12 11 15 15 N 1.39071 * 119.93422 * 180.26140 * 14 13 12 16 16 C 1.34777 * 120.00137 * 213.69894 * 15 14 13 17 17 O 1.21731 * 119.99576 * 5.12320 * 16 15 14 18 18 C 1.46190 * 120.00364 * 185.11991 * 16 15 14 19 19 H 1.08005 * 120.00142 * 6.08914 * 18 16 15 20 20 C 1.40123 * 120.00102 * 186.08440 * 18 16 15 21 21 N 1.30632 * 120.00354 * 353.81719 * 20 18 16 22 22 Si 1.86808 * 120.00067 * 173.81851 * 20 18 16 23 23 H 1.48502 * 109.46912 * 94.98279 * 22 20 18 24 24 H 1.48494 * 109.47248 * 214.98750 * 22 20 18 25 25 H 1.48505 * 109.46724 * 334.98478 * 22 20 18 26 26 C 1.39278 * 120.13416 * 0.55224 * 14 13 12 27 27 C 1.37606 * 120.06700 * 359.72642 * 26 14 13 28 28 H 1.09000 * 109.46997 * 300.00134 * 1 2 3 29 29 H 1.09002 * 109.47089 * 59.99946 * 1 2 3 30 30 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46997 * 239.99866 * 2 1 3 32 32 H 1.08995 * 109.47257 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46566 * 299.99967 * 3 2 1 34 34 H 1.09003 * 109.47292 * 59.99454 * 3 2 1 35 35 H 0.96999 * 119.99710 * 334.99764 * 4 2 1 36 36 H 1.08998 * 109.46816 * 60.00740 * 7 5 4 37 37 H 1.08994 * 109.47444 * 300.00234 * 7 5 4 38 38 H 1.07996 * 120.03343 * 0.03080 * 12 11 9 39 39 H 1.07996 * 119.96415 * 179.70302 * 13 12 11 40 40 H 0.96996 * 120.00165 * 33.69083 * 15 14 13 41 41 H 0.97003 * 120.00711 * 179.97438 * 21 20 18 42 42 H 1.08003 * 119.96796 * 179.71020 * 26 14 13 43 43 H 1.07997 * 120.03340 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1944 6 8 3.9358 -1.1987 0.2026 7 6 3.7429 -1.9690 2.4251 8 8 5.0742 -2.4911 2.1729 9 6 5.6704 -3.1587 3.1802 10 8 5.0934 -3.3012 4.2400 11 6 7.0225 -3.7174 2.9959 12 6 7.6428 -4.4100 4.0404 13 6 8.9071 -4.9249 3.8675 14 6 9.5645 -4.7666 2.6499 15 7 10.8400 -5.2927 2.4763 16 6 11.7319 -4.6536 1.6937 17 8 11.4540 -3.5698 1.2141 18 6 13.0330 -5.2617 1.4209 19 1 13.2431 -6.2642 1.7636 20 6 14.0076 -4.5441 0.7146 21 7 13.7147 -3.3817 0.1956 22 14 15.7257 -5.2499 0.5151 23 1 15.8192 -5.9654 -0.7827 24 1 16.7202 -4.1476 0.5456 25 1 16.0032 -6.1977 1.6242 26 6 8.9494 -4.0772 1.6077 27 6 7.6874 -3.5551 1.7765 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9562 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.4623 -0.7386 1.9895 36 1 3.0704 -2.7910 2.6704 37 1 3.7797 -1.2684 3.2591 38 1 7.1318 -4.5370 4.9833 39 1 9.3885 -5.4557 4.6754 40 1 11.0879 -6.1196 2.9186 41 1 14.3894 -2.8847 -0.2930 42 1 9.4635 -3.9520 0.6661 43 1 7.2111 -3.0203 0.9681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003429181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:21 Heat of formation + Delta-G solvation = -162.734149 kcal Electronic energy + Delta-G solvation = -27061.116509 eV Core-core repulsion = 22877.198909 eV Total energy + Delta-G solvation = -4183.917600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83144 -40.97726 -40.52028 -38.72920 -37.57546 -36.89640 -35.43691 -34.59227 -32.98768 -32.00945 -31.30109 -29.42672 -28.34234 -28.11479 -25.13086 -23.78897 -22.96187 -22.30539 -21.65286 -21.43674 -19.59072 -19.25967 -18.46246 -18.10288 -17.80103 -17.60129 -17.54676 -16.97113 -16.18261 -16.10629 -15.73856 -15.50786 -15.16541 -15.10005 -14.84271 -14.62421 -14.32988 -14.22184 -14.03885 -13.79001 -13.49076 -13.42257 -13.21463 -13.12963 -13.06995 -12.82420 -12.72802 -12.32980 -12.20931 -12.03597 -11.96984 -11.90123 -11.75417 -11.19074 -11.04386 -10.91287 -10.24376 -10.13326 -9.85516 -8.96496 -8.40838 -6.97614 -0.30467 0.44113 1.18655 1.35921 1.40642 1.40939 1.48076 1.57907 2.19425 2.29660 2.34392 2.77956 2.86181 3.51818 3.53985 3.70910 3.89236 3.93895 3.99330 4.01722 4.04064 4.13935 4.29838 4.35245 4.45986 4.64765 4.70626 4.74013 4.91865 4.95655 4.99780 5.07659 5.23909 5.24995 5.28867 5.30984 5.31584 5.37958 5.45621 5.66379 5.76876 6.11953 6.23207 6.38833 6.62876 6.75115 7.11012 7.24960 8.28451 8.52859 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.002000 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.927943 B =13996.965685 C =15292.131995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.132 3.868 3 C -0.163 4.163 4 N -0.705 5.705 5 C 0.514 3.486 6 O -0.568 6.568 7 C 0.044 3.956 8 O -0.348 6.348 9 C 0.529 3.471 10 O -0.525 6.525 11 C -0.186 4.186 12 C -0.016 4.016 13 C -0.174 4.174 14 C 0.210 3.790 15 N -0.686 5.686 16 C 0.526 3.474 17 O -0.603 6.603 18 C -0.562 4.562 19 H 0.098 0.902 20 C 0.029 3.971 21 N -0.811 5.811 22 Si 1.001 2.999 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.244 1.244 26 C -0.172 4.172 27 C -0.034 4.034 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.420 0.580 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.414 0.586 41 H 0.279 0.721 42 H 0.106 0.894 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.292 2.153 6.275 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.028 3.972 3 C -0.221 4.221 4 N -0.360 5.360 5 C 0.300 3.700 6 O -0.446 6.446 7 C -0.032 4.032 8 O -0.263 6.263 9 C 0.376 3.624 10 O -0.417 6.417 11 C -0.189 4.189 12 C -0.035 4.035 13 C -0.195 4.195 14 C 0.110 3.890 15 N -0.329 5.329 16 C 0.333 3.667 17 O -0.488 6.488 18 C -0.597 4.597 19 H 0.116 0.884 20 C -0.188 4.188 21 N -0.440 5.440 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.167 1.167 26 C -0.193 4.193 27 C -0.053 4.053 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.258 0.742 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.179 0.821 39 H 0.181 0.819 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.052 3.072 5.366 24.834 hybrid contribution 0.778 -0.265 -0.012 0.822 sum -23.273 2.807 5.354 24.045 Atomic orbital electron populations 1.22024 0.90987 1.03400 1.04415 1.21084 0.96118 0.92591 0.87393 1.22178 1.00315 0.95938 1.03645 1.45839 1.16244 1.55730 1.18192 1.20370 0.82325 0.78767 0.88577 1.90776 1.57234 1.60276 1.36291 1.22948 0.82314 1.01074 0.96907 1.86630 1.31760 1.65878 1.42064 1.21000 0.86017 0.74497 0.80865 1.90779 1.65594 1.57856 1.27432 1.18957 0.93020 1.09643 0.97286 1.21152 0.93079 0.91438 0.97836 1.21101 0.96395 1.06645 0.95395 1.18527 0.85095 0.92262 0.93147 1.43789 1.10090 1.27708 1.51292 1.18808 0.85170 0.84616 0.78084 1.90627 1.79305 1.23950 1.54964 1.21425 0.97348 1.03237 1.37694 0.88441 1.27033 1.05354 0.94299 0.92090 1.70141 1.36238 1.12905 1.24710 0.84944 0.74426 0.78621 0.80002 1.18743 1.19860 1.16741 1.21115 0.95193 1.03445 0.99543 1.21241 0.92817 0.94619 0.96624 0.90205 0.89832 0.91552 0.91762 0.95080 0.90194 0.90783 0.74189 0.85493 0.85865 0.82086 0.81887 0.74925 0.91141 0.87574 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.38 71.98 0.68 -0.21 16 2 C 0.13 1.74 3.18 44.99 0.14 1.88 16 3 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 4 N -0.70 -9.18 5.08 -442.53 -2.25 -11.42 16 5 C 0.51 11.35 7.87 87.66 0.69 12.04 16 6 O -0.57 -18.98 16.17 15.75 0.25 -18.72 16 7 C 0.04 0.87 5.95 71.24 0.42 1.29 16 8 O -0.35 -10.32 9.00 -50.24 -0.45 -10.77 16 9 C 0.53 16.18 7.89 70.25 0.55 16.74 16 10 O -0.53 -15.92 16.13 19.81 0.32 -15.60 16 11 C -0.19 -6.19 5.88 -20.07 -0.12 -6.31 16 12 C -0.02 -0.48 9.58 22.51 0.22 -0.26 16 13 C -0.17 -5.43 9.94 22.37 0.22 -5.20 16 14 C 0.21 8.52 6.27 38.49 0.24 8.77 16 15 N -0.69 -29.77 5.30 -307.50 -1.63 -31.40 16 16 C 0.53 29.23 7.46 86.31 0.64 29.87 16 17 O -0.60 -38.85 12.70 -4.45 -0.06 -38.91 16 18 C -0.56 -30.13 9.53 24.79 0.24 -29.89 16 19 H 0.10 4.58 7.86 -2.91 -0.02 4.55 16 20 C 0.03 1.55 5.50 85.33 0.47 2.02 16 21 N -0.81 -48.04 11.85 21.85 0.26 -47.78 16 22 Si 1.00 39.02 29.56 68.60 2.03 41.05 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.24 -8.73 7.11 99.48 0.71 -8.02 16 26 C -0.17 -7.59 8.62 22.37 0.19 -7.40 16 27 C -0.03 -1.29 9.60 22.51 0.22 -1.07 16 28 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 1.21 7.58 -2.39 -0.02 1.19 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.42 2.19 8.60 -92.71 -0.80 1.39 16 36 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.16 3.83 7.64 -2.91 -0.02 3.81 16 39 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.41 14.57 8.79 -92.71 -0.81 13.76 16 41 H 0.28 14.93 8.29 -92.71 -0.77 14.17 16 42 H 0.11 5.55 6.39 -2.91 -0.02 5.53 16 43 H 0.13 4.95 7.60 -2.91 -0.02 4.93 16 Total: -1.00 -83.15 379.18 3.42 -79.73 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.54 Total: 33.09 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 5.49 Total: 20.74 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -3.62 Total: -90.60 kcal Atomic # 8 Polarization: -84.06 SS G_CDS: 0.07 Total: -84.00 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -83.15 3.42 -79.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003429181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.005 kcal (2) G-P(sol) polarization free energy of solvation -83.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds