Wall clock time and date at job start Tue Mar 31 2020 17:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47170 * 2 1 4 4 C 1.53006 * 109.46519 * 240.00278 * 2 1 3 5 5 H 1.08995 * 109.47363 * 305.54090 * 4 2 1 6 6 O 1.45199 * 109.47147 * 65.54487 * 4 2 1 7 7 C 1.34700 * 117.00120 * 269.99864 * 6 4 2 8 8 O 1.21466 * 119.99793 * 359.97438 * 7 6 4 9 9 C 1.47766 * 120.00215 * 180.02562 * 7 6 4 10 10 C 1.39964 * 120.02888 * 359.71654 * 9 7 6 11 11 C 1.38325 * 120.35204 * 179.76881 * 10 9 7 12 12 C 1.37752 * 120.41711 * 0.51298 * 11 10 9 13 13 C 1.40757 * 120.05241 * 359.74365 * 12 11 10 14 14 C 1.41439 * 120.17612 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00271 * 29.31918 * 14 13 12 16 16 C 1.39940 * 119.99881 * 209.31576 * 14 13 12 17 17 N 1.30827 * 119.99923 * 9.43707 * 16 14 13 18 18 Si 1.86798 * 119.99801 * 189.43623 * 16 14 13 19 19 H 1.48503 * 109.47271 * 59.99994 * 18 16 14 20 20 H 1.48501 * 109.47158 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47521 * 300.00224 * 18 16 14 22 22 C 1.39051 * 120.03102 * 179.97438 * 9 7 6 23 23 C 1.50707 * 109.47051 * 185.54291 * 4 2 1 24 24 O 1.21238 * 120.00103 * 243.89605 * 23 4 2 25 25 N 1.34774 * 119.99926 * 63.88888 * 23 4 2 26 26 C 1.34772 * 120.00354 * 175.08543 * 25 23 4 27 27 N 1.34775 * 120.00745 * 180.02562 * 26 25 23 28 28 O 1.21544 * 119.99742 * 359.97438 * 26 25 23 29 29 H 1.08999 * 109.47100 * 53.85854 * 1 2 3 30 30 H 1.09004 * 109.47031 * 173.86141 * 1 2 3 31 31 H 1.09001 * 109.46490 * 293.85815 * 1 2 3 32 32 H 1.08993 * 109.47532 * 120.00758 * 2 1 3 33 33 H 1.09002 * 109.46705 * 60.00764 * 3 2 1 34 34 H 1.08999 * 109.46696 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47307 * 300.00240 * 3 2 1 36 36 H 1.08003 * 119.82837 * 0.02562 * 10 9 7 37 37 H 1.08005 * 119.78751 * 180.26039 * 11 10 9 38 38 H 1.08006 * 119.97585 * 179.76373 * 12 11 10 39 39 H 0.97009 * 119.99628 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.20310 * 359.95088 * 22 9 7 41 41 H 0.97008 * 120.00095 * 355.08445 * 25 23 4 42 42 H 0.97005 * 119.99217 * 0.02562 * 27 26 25 43 43 H 0.96994 * 120.00801 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 1 1.5978 -1.7162 -1.3004 6 8 1.6668 0.0354 -2.4311 7 6 0.4797 -0.2582 -2.9958 8 8 -0.2244 -1.1230 -2.5144 9 6 0.0344 0.4709 -4.2015 10 6 0.8431 1.4708 -4.7538 11 6 0.4350 2.1543 -5.8851 12 6 -0.7761 1.8663 -6.4750 13 6 -1.6054 0.8677 -5.9308 14 6 -2.8492 0.5695 -6.5347 15 1 -2.9816 0.7116 -7.5971 16 6 -3.9083 0.0903 -5.7556 17 7 -3.8133 0.0917 -4.4508 18 14 -5.4575 -0.5514 -6.5787 19 1 -5.1125 -1.6968 -7.4586 20 1 -6.4214 -0.9968 -5.5405 21 1 -6.0705 0.5298 -7.3913 22 6 -1.1907 0.1679 -4.7852 23 6 3.5407 -0.8413 -1.1828 24 8 4.2309 -0.2796 -2.0062 25 7 4.1156 -1.5729 -0.2078 26 6 5.4499 -1.7622 -0.2051 27 7 6.0249 -2.4943 0.7696 28 8 6.1348 -1.2736 -1.0822 29 1 -0.3633 0.6061 -0.8299 30 1 -0.3633 -1.0218 -0.1099 31 1 -0.3632 0.4157 0.9399 32 1 1.8934 -0.5139 0.8898 33 1 1.6768 1.9562 0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.7926 1.7073 -4.2968 37 1 1.0681 2.9213 -6.3061 38 1 -1.0893 2.4070 -7.3559 39 1 -4.5473 -0.2408 -3.9107 40 1 -1.8196 -0.6006 -4.3605 41 1 3.5689 -1.9632 0.4921 42 1 5.4781 -2.8852 1.4691 43 1 6.9852 -2.6302 0.7718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051534603.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:26 Heat of formation + Delta-G solvation = -136.695126 kcal Electronic energy + Delta-G solvation = -28969.259019 eV Core-core repulsion = 24786.470556 eV Total energy + Delta-G solvation = -4182.788463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.51018 -40.17155 -38.43034 -37.40300 -36.16621 -35.12783 -34.50093 -33.70717 -33.56644 -30.39619 -29.51325 -28.34274 -27.15129 -25.38336 -23.88435 -22.83792 -21.20632 -20.98776 -20.36109 -19.64819 -19.10836 -18.08720 -17.73503 -16.78029 -16.48022 -16.24424 -15.93175 -15.70965 -15.23102 -14.82756 -14.61935 -14.33507 -14.18489 -14.08077 -13.47658 -13.22740 -13.06279 -12.72671 -12.58228 -12.16840 -12.11992 -11.82728 -11.60107 -11.28676 -11.16750 -11.13736 -11.00118 -10.95702 -10.76217 -10.54622 -10.38262 -10.35453 -10.18135 -10.14069 -9.75808 -9.69690 -9.50940 -9.28950 -7.76729 -7.50643 -6.76781 -4.46455 1.85574 1.89783 1.99833 2.78617 3.00498 3.05972 3.08282 3.12450 3.13410 3.52204 3.84412 3.91222 4.23689 4.47460 4.61350 4.74244 4.85914 5.20513 5.37210 5.51191 5.55031 5.66256 5.68268 5.83222 5.94336 5.97410 6.05706 6.13187 6.30930 6.38806 6.41588 6.42475 6.56905 6.82346 6.92372 6.95025 7.08633 7.18210 7.30058 7.66693 7.73082 7.78951 7.90340 8.09269 8.09974 8.43103 8.44967 8.76302 8.79612 10.17766 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.002877 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.670459 B = 9729.949077 C =10267.777156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.150 4.150 4 C 0.077 3.923 5 H 0.115 0.885 6 O -0.322 6.322 7 C 0.514 3.486 8 O -0.511 6.511 9 C -0.119 4.119 10 C -0.182 4.182 11 C -0.108 4.108 12 C -0.192 4.192 13 C 0.093 3.907 14 C -0.462 4.462 15 H 0.080 0.920 16 C 0.071 3.929 17 N -0.799 5.799 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.079 4.079 23 C 0.522 3.478 24 O -0.436 6.436 25 N -0.689 5.689 26 C 0.698 3.302 27 N -0.858 5.858 28 O -0.532 6.532 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.283 0.717 40 H 0.139 0.861 41 H 0.410 0.590 42 H 0.399 0.601 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.735 -5.233 15.106 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.207 4.207 4 C 0.017 3.983 5 H 0.132 0.868 6 O -0.238 6.238 7 C 0.362 3.638 8 O -0.400 6.400 9 C -0.121 4.121 10 C -0.202 4.202 11 C -0.127 4.127 12 C -0.212 4.212 13 C 0.091 3.909 14 C -0.492 4.492 15 H 0.099 0.901 16 C -0.146 4.146 17 N -0.425 5.425 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.099 4.099 23 C 0.306 3.694 24 O -0.300 6.300 25 N -0.358 5.358 26 C 0.396 3.604 27 N -0.429 5.429 28 O -0.403 6.403 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.245 0.755 42 H 0.228 0.772 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 10.259 -4.678 14.085 18.042 hybrid contribution -0.923 -0.911 0.717 1.482 sum 9.336 -5.589 14.802 18.371 Atomic orbital electron populations 1.21927 0.92557 1.03583 1.02373 1.21553 0.98313 0.97713 0.94659 1.21837 1.00682 0.95028 1.03151 1.22408 0.90189 0.98844 0.86861 0.86796 1.86761 1.38458 1.58880 1.39720 1.21964 0.77660 0.80825 0.83369 1.90751 1.54251 1.32105 1.62928 1.18805 0.97914 1.00841 0.94508 1.20688 0.99926 1.00386 0.99186 1.20545 0.96478 0.99437 0.96205 1.21289 0.96711 1.00327 1.02880 1.17555 0.92640 0.89448 0.91303 1.19506 0.94955 1.38712 0.96005 0.90149 1.25917 1.00655 0.93339 0.94693 1.69727 1.32923 1.34594 1.05231 0.86263 0.80179 0.80027 0.79642 1.18854 1.20297 1.19017 1.21725 0.91990 0.99450 0.96700 1.20468 0.90111 0.78265 0.80584 1.90880 1.63923 1.39247 1.35974 1.44026 1.08198 1.53393 1.30191 1.16095 0.81566 0.79837 0.82875 1.43058 1.12704 1.57518 1.29586 1.91142 1.61370 1.51017 1.36755 0.91820 0.91195 0.92258 0.89824 0.92051 0.92895 0.90914 0.87537 0.88392 0.88242 0.90578 0.84310 0.75472 0.77237 0.74722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 7.75 37.16 0.29 -1.64 16 2 C -0.10 -1.17 2.72 -90.62 -0.25 -1.42 16 3 C -0.15 -1.82 8.81 37.16 0.33 -1.49 16 4 C 0.08 1.09 2.35 -27.88 -0.07 1.02 16 5 H 0.11 1.50 7.16 -51.93 -0.37 1.13 16 6 O -0.32 -6.05 7.71 -47.16 -0.36 -6.42 16 7 C 0.51 10.99 6.45 34.63 0.22 11.21 16 8 O -0.51 -11.15 13.40 -19.24 -0.26 -11.41 16 9 C -0.12 -2.83 5.87 -105.05 -0.62 -3.45 16 10 C -0.18 -4.09 9.62 -38.90 -0.37 -4.47 16 11 C -0.11 -2.37 10.01 -39.73 -0.40 -2.77 16 12 C -0.19 -4.53 9.78 -38.81 -0.38 -4.91 16 13 C 0.09 2.41 5.55 -106.87 -0.59 1.82 16 14 C -0.46 -11.91 9.06 -37.73 -0.34 -12.25 16 15 H 0.08 1.97 7.86 -52.49 -0.41 1.55 16 16 C 0.07 1.76 5.27 -17.34 -0.09 1.66 16 17 N -0.80 -20.50 10.81 55.55 0.60 -19.90 16 18 Si 0.91 18.49 29.57 -169.99 -5.03 13.46 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.08 -2.05 8.20 -38.42 -0.32 -2.37 16 23 C 0.52 7.52 6.13 -10.98 -0.07 7.45 16 24 O -0.44 -8.61 14.92 -25.35 -0.38 -8.99 16 25 N -0.69 -6.55 5.16 -15.78 -0.08 -6.63 16 26 C 0.70 7.73 8.77 -86.92 -0.76 6.96 16 27 N -0.86 -4.33 8.88 27.63 0.25 -4.09 16 28 O -0.53 -9.18 15.59 -18.45 -0.29 -9.47 16 29 H 0.06 1.06 6.58 -51.93 -0.34 0.72 16 30 H 0.07 0.95 7.46 -51.93 -0.39 0.56 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.60 7.55 -51.93 -0.39 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.65 7.40 -51.93 -0.38 0.27 16 35 H 0.07 1.07 7.54 -51.93 -0.39 0.67 16 36 H 0.11 2.25 7.59 -52.48 -0.40 1.85 16 37 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.14 3.81 5.79 -52.49 -0.30 3.51 16 41 H 0.41 1.83 8.18 -40.82 -0.33 1.50 16 42 H 0.40 0.47 8.84 -40.82 -0.36 0.11 16 43 H 0.42 1.74 8.93 -40.82 -0.36 1.38 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -35.33 365.29 -8.72 -44.06 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.27 Total: 8.52 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -3.41 Total: -4.63 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.76 Total: -30.62 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.29 Total: -36.29 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.33 -8.72 -44.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051534603.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.638 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds