Wall clock time and date at job start Tue Mar 31 2020 17:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47409 * 2 1 4 4 N 1.46501 * 109.47267 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00567 * 179.97438 * 4 3 2 6 6 O 1.21544 * 119.99468 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00290 * 179.97438 * 5 4 3 8 8 C 1.34780 * 120.00053 * 180.02562 * 7 5 4 9 9 O 1.21240 * 119.99968 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00312 * 180.02562 * 8 7 5 11 11 O 1.45200 * 109.47422 * 179.97438 * 10 8 7 12 12 C 1.34701 * 117.00169 * 179.97438 * 11 10 8 13 13 O 1.21471 * 120.00074 * 0.02562 * 12 11 10 14 14 C 1.47769 * 120.00069 * 179.97438 * 12 11 10 15 15 C 1.39960 * 120.03302 * 359.97438 * 14 12 11 16 16 C 1.38317 * 120.35753 * 180.02562 * 15 14 12 17 17 C 1.37755 * 120.41703 * 359.97438 * 16 15 14 18 18 C 1.40757 * 120.05004 * 0.02562 * 17 16 15 19 19 C 1.41439 * 120.17704 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99698 * 24.41558 * 19 18 17 21 21 C 1.39932 * 120.00172 * 204.41934 * 19 18 17 22 22 N 1.30824 * 120.00201 * 17.84828 * 21 19 18 23 23 Si 1.86806 * 119.99927 * 197.84744 * 21 19 18 24 24 H 1.48496 * 109.47243 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46953 * 120.00169 * 23 21 19 26 26 H 1.48506 * 109.46942 * 240.00042 * 23 21 19 27 27 C 1.39059 * 120.03051 * 180.02562 * 14 12 11 28 28 H 1.09004 * 109.46984 * 59.99836 * 1 2 3 29 29 H 1.08999 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46777 * 300.00238 * 1 2 3 31 31 H 1.08994 * 109.46832 * 239.99436 * 2 1 3 32 32 H 1.09000 * 109.46519 * 120.00239 * 2 1 3 33 33 H 1.09002 * 109.47345 * 60.00110 * 3 2 1 34 34 H 1.08992 * 109.47534 * 299.99986 * 3 2 1 35 35 H 0.97005 * 119.99884 * 0.02562 * 4 3 2 36 36 H 0.96996 * 120.00418 * 0.02562 * 7 5 4 37 37 H 1.09004 * 109.47480 * 59.99666 * 10 8 7 38 38 H 1.09004 * 109.46959 * 299.99994 * 10 8 7 39 39 H 1.08008 * 119.82112 * 359.97438 * 15 14 12 40 40 H 1.08005 * 119.79035 * 180.02562 * 16 15 14 41 41 H 1.08001 * 119.97827 * 179.97438 * 17 16 15 42 42 H 0.96997 * 120.00007 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.20114 * 359.70048 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1791 2.6094 0.0002 6 8 3.5714 3.6621 -0.0002 7 7 5.5268 2.6093 0.0013 8 6 6.2008 3.7765 0.0014 9 8 5.5947 4.8265 0.0010 10 6 7.7077 3.7765 0.0020 11 8 8.1918 5.1454 0.0014 12 6 9.5272 5.3218 0.0024 13 8 10.2672 4.3585 0.0033 14 6 10.0921 6.6873 0.0013 15 6 9.2403 7.7978 -0.0013 16 6 9.7618 9.0789 -0.0029 17 6 11.1250 9.2769 -0.0014 18 6 11.9977 8.1726 0.0013 19 6 13.3978 8.3728 0.0023 20 1 13.8114 9.2931 0.3878 21 6 14.2472 7.3788 -0.4963 22 7 13.7695 6.4370 -1.2685 23 14 16.0633 7.3965 -0.0592 24 1 16.3490 8.5569 0.8223 25 1 16.4143 6.1393 0.6491 26 1 16.8703 7.5069 -1.3009 27 6 11.4707 6.8701 0.0018 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.9901 0.6023 0.0006 36 1 6.0118 1.7693 0.0020 37 1 8.0715 3.2624 -0.8877 38 1 8.0707 3.2627 0.8923 39 1 8.1698 7.6536 -0.0030 40 1 9.0959 9.9293 -0.0045 41 1 11.5245 10.2803 -0.0031 42 1 14.3583 5.7482 -1.6144 43 1 12.1319 6.0163 0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051534718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:41 Heat of formation + Delta-G solvation = -134.046104 kcal Electronic energy + Delta-G solvation = -26957.327726 eV Core-core repulsion = 22774.654134 eV Total energy + Delta-G solvation = -4182.673593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39534 -39.95071 -38.63257 -37.36716 -36.18947 -35.73157 -34.85524 -33.76901 -32.88505 -30.58495 -29.54610 -29.03986 -26.73519 -25.37839 -23.56728 -22.43890 -22.01509 -21.00398 -20.75613 -19.92534 -19.16432 -18.05257 -17.24508 -16.83752 -16.60591 -16.21042 -16.04346 -15.67269 -15.41590 -15.20530 -14.85973 -14.62968 -14.21703 -14.04644 -13.45920 -13.40968 -13.12477 -13.05651 -12.66721 -12.63164 -12.57467 -12.26629 -11.70566 -11.67987 -11.43656 -11.22564 -11.13218 -11.10887 -10.77941 -10.55782 -10.51716 -10.36569 -10.28982 -9.85618 -9.72563 -9.55748 -9.53071 -9.26488 -7.77352 -7.56786 -6.84950 -4.45112 1.80231 1.85996 1.90490 2.75749 3.00408 3.00715 3.05528 3.09863 3.12154 3.51319 3.66733 3.88808 4.27619 4.28605 4.43819 4.55239 4.68363 4.95891 4.97363 5.09935 5.10491 5.20746 5.46391 5.50660 5.52375 5.58474 5.64385 5.79061 5.95043 6.09594 6.15296 6.44322 6.54331 6.79549 6.91583 6.94963 7.14498 7.16162 7.29221 7.66599 7.74115 7.79194 7.89102 8.06895 8.08154 8.39793 8.43102 8.74936 8.77305 10.10570 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.001843 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.763207 B =15187.881148 C =16027.089417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.133 3.867 4 N -0.740 5.740 5 C 0.695 3.305 6 O -0.527 6.527 7 N -0.690 5.690 8 C 0.517 3.483 9 O -0.437 6.437 10 C 0.051 3.949 11 O -0.332 6.332 12 C 0.517 3.483 13 O -0.516 6.516 14 C -0.116 4.116 15 C -0.189 4.189 16 C -0.104 4.104 17 C -0.198 4.198 18 C 0.094 3.906 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.788 5.788 23 Si 0.910 3.090 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.087 4.087 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.411 0.589 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.284 0.716 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 -16.621 1.783 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.009 3.991 4 N -0.397 5.397 5 C 0.395 3.605 6 O -0.398 6.398 7 N -0.358 5.358 8 C 0.302 3.698 9 O -0.302 6.302 10 C -0.027 4.027 11 O -0.248 6.248 12 C 0.364 3.636 13 O -0.406 6.406 14 C -0.118 4.118 15 C -0.209 4.209 16 C -0.122 4.122 17 C -0.218 4.218 18 C 0.091 3.909 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.145 4.145 22 N -0.413 5.413 23 Si 0.735 3.265 24 H -0.183 1.183 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.107 4.107 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.246 0.754 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.347 -15.421 1.634 23.268 hybrid contribution 1.347 -1.311 0.023 1.880 sum -16.000 -16.732 1.658 23.210 Atomic orbital electron populations 1.21680 0.94293 1.02291 1.02559 1.21739 0.97182 0.95555 1.02847 1.21370 0.77423 0.97338 1.02965 1.45249 1.07768 1.06827 1.79905 1.16055 0.81055 0.84912 0.78497 1.91100 1.66826 1.29761 1.52122 1.43984 1.06946 1.11334 1.73538 1.20404 0.89514 0.83140 0.76778 1.90894 1.69402 1.30062 1.39860 1.22449 0.89734 0.85127 1.05407 1.86702 1.25866 1.27056 1.85221 1.22011 0.78609 0.91375 0.71599 1.90769 1.59917 1.42666 1.47241 1.18769 0.94441 0.87286 1.11268 1.20667 0.97827 0.91889 1.10512 1.20537 0.95031 0.95490 1.01149 1.21217 0.92744 0.97832 1.09979 1.17539 0.93519 0.90299 0.89502 1.19594 0.90580 1.02596 1.36087 0.89886 1.25959 1.01782 0.94235 0.92558 1.69786 1.38279 1.11331 1.21892 0.86223 0.81488 0.79508 0.79329 1.18291 1.19595 1.19913 1.21639 0.91043 0.98914 0.99079 0.92198 0.92061 0.92209 0.91172 0.91178 0.91177 0.91168 0.76726 0.75422 0.87714 0.87753 0.87463 0.88375 0.88255 0.90508 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.16 0.37 -0.17 16 2 C -0.14 -0.48 6.05 -26.73 -0.16 -0.64 16 3 C 0.13 0.86 5.67 -4.04 -0.02 0.83 16 4 N -0.74 -4.95 5.56 -65.24 -0.36 -5.31 16 5 C 0.69 8.00 8.50 -86.93 -0.74 7.26 16 6 O -0.53 -9.14 14.74 -18.48 -0.27 -9.42 16 7 N -0.69 -6.44 5.24 -15.78 -0.08 -6.52 16 8 C 0.52 7.22 7.85 -10.99 -0.09 7.13 16 9 O -0.44 -8.62 14.90 -25.37 -0.38 -9.00 16 10 C 0.05 0.68 5.95 36.00 0.21 0.90 16 11 O -0.33 -6.35 8.99 -47.17 -0.42 -6.78 16 12 C 0.52 11.32 7.90 34.63 0.27 11.59 16 13 O -0.52 -11.76 16.12 -19.24 -0.31 -12.07 16 14 C -0.12 -2.81 5.87 -105.05 -0.62 -3.43 16 15 C -0.19 -4.32 9.62 -38.91 -0.37 -4.70 16 16 C -0.10 -2.30 10.01 -39.73 -0.40 -2.70 16 17 C -0.20 -4.70 9.78 -38.81 -0.38 -5.08 16 18 C 0.09 2.45 5.57 -106.87 -0.60 1.86 16 19 C -0.46 -11.85 9.05 -37.73 -0.34 -12.19 16 20 H 0.08 2.04 7.91 -52.48 -0.41 1.62 16 21 C 0.07 1.81 5.14 -17.35 -0.09 1.72 16 22 N -0.79 -20.32 10.95 55.55 0.61 -19.71 16 23 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.09 -2.29 8.23 -38.42 -0.32 -2.60 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.40 1.17 8.49 -40.82 -0.35 0.82 16 36 H 0.41 1.65 8.71 -40.82 -0.36 1.30 16 37 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.11 2.31 7.59 -52.48 -0.40 1.92 16 40 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 43 H 0.14 3.76 5.74 -52.49 -0.30 3.46 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -36.14 378.66 -9.41 -45.55 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.60 Total: 4.46 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.26 Total: -0.21 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.16 Total: -31.55 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.38 Total: -37.27 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.14 -9.41 -45.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051534718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.494 kcal (2) G-P(sol) polarization free energy of solvation -36.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds