Wall clock time and date at job start Tue Mar 31 2020 17:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47409 * 2 1 4 4 N 1.46501 * 109.47267 * 179.97438 * 3 2 1 5 5 C 1.34771 * 120.00567 * 179.97438 * 4 3 2 6 6 O 1.21544 * 119.99468 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00290 * 179.97438 * 5 4 3 8 8 C 1.34780 * 120.00053 * 180.02562 * 7 5 4 9 9 O 1.21240 * 119.99968 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00312 * 180.02562 * 8 7 5 11 11 O 1.45200 * 109.47422 * 179.97438 * 10 8 7 12 12 C 1.34701 * 117.00169 * 179.97438 * 11 10 8 13 13 O 1.21471 * 120.00074 * 0.02562 * 12 11 10 14 14 C 1.47769 * 120.00069 * 179.97438 * 12 11 10 15 15 C 1.39960 * 120.03302 * 359.97438 * 14 12 11 16 16 C 1.38317 * 120.35753 * 180.02562 * 15 14 12 17 17 C 1.37755 * 120.41703 * 359.97438 * 16 15 14 18 18 C 1.40757 * 120.05004 * 0.02562 * 17 16 15 19 19 C 1.41439 * 120.17704 * 179.97438 * 18 17 16 20 20 H 1.08007 * 119.99698 * 24.41558 * 19 18 17 21 21 C 1.39932 * 120.00172 * 204.41934 * 19 18 17 22 22 N 1.30824 * 120.00201 * 17.84828 * 21 19 18 23 23 Si 1.86806 * 119.99927 * 197.84744 * 21 19 18 24 24 H 1.48496 * 109.47243 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46953 * 120.00169 * 23 21 19 26 26 H 1.48506 * 109.46942 * 240.00042 * 23 21 19 27 27 C 1.39059 * 120.03051 * 180.02562 * 14 12 11 28 28 H 1.09004 * 109.46984 * 59.99836 * 1 2 3 29 29 H 1.08999 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46777 * 300.00238 * 1 2 3 31 31 H 1.08994 * 109.46832 * 239.99436 * 2 1 3 32 32 H 1.09000 * 109.46519 * 120.00239 * 2 1 3 33 33 H 1.09002 * 109.47345 * 60.00110 * 3 2 1 34 34 H 1.08992 * 109.47534 * 299.99986 * 3 2 1 35 35 H 0.97005 * 119.99884 * 0.02562 * 4 3 2 36 36 H 0.96996 * 120.00418 * 0.02562 * 7 5 4 37 37 H 1.09004 * 109.47480 * 59.99666 * 10 8 7 38 38 H 1.09004 * 109.46959 * 299.99994 * 10 8 7 39 39 H 1.08008 * 119.82112 * 359.97438 * 15 14 12 40 40 H 1.08005 * 119.79035 * 180.02562 * 16 15 14 41 41 H 1.08001 * 119.97827 * 179.97438 * 17 16 15 42 42 H 0.96997 * 120.00007 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.20114 * 359.70048 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1791 2.6094 0.0002 6 8 3.5714 3.6621 -0.0002 7 7 5.5268 2.6093 0.0013 8 6 6.2008 3.7765 0.0014 9 8 5.5947 4.8265 0.0010 10 6 7.7077 3.7765 0.0020 11 8 8.1918 5.1454 0.0014 12 6 9.5272 5.3218 0.0024 13 8 10.2672 4.3585 0.0033 14 6 10.0921 6.6873 0.0013 15 6 9.2403 7.7978 -0.0013 16 6 9.7618 9.0789 -0.0029 17 6 11.1250 9.2769 -0.0014 18 6 11.9977 8.1726 0.0013 19 6 13.3978 8.3728 0.0023 20 1 13.8114 9.2931 0.3878 21 6 14.2472 7.3788 -0.4963 22 7 13.7695 6.4370 -1.2685 23 14 16.0633 7.3965 -0.0592 24 1 16.3490 8.5569 0.8223 25 1 16.4143 6.1393 0.6491 26 1 16.8703 7.5069 -1.3009 27 6 11.4707 6.8701 0.0018 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.9901 0.6023 0.0006 36 1 6.0118 1.7693 0.0020 37 1 8.0715 3.2624 -0.8877 38 1 8.0707 3.2627 0.8923 39 1 8.1698 7.6536 -0.0030 40 1 9.0959 9.9293 -0.0045 41 1 11.5245 10.2803 -0.0031 42 1 14.3583 5.7482 -1.6144 43 1 12.1319 6.0163 0.0079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051534718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:40 Heat of formation + Delta-G solvation = -157.634069 kcal Electronic energy + Delta-G solvation = -26958.350577 eV Core-core repulsion = 22774.654134 eV Total energy + Delta-G solvation = -4183.696444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.43263 -41.50103 -39.78549 -39.12666 -37.41171 -36.80028 -35.92408 -35.62201 -33.45291 -32.35317 -31.39108 -30.28180 -27.42784 -27.17933 -25.08937 -23.41156 -22.85814 -22.59487 -21.76424 -21.58607 -20.03835 -19.73551 -18.48557 -18.16459 -17.98051 -17.63269 -17.17026 -16.79389 -16.55694 -16.44621 -16.23395 -15.92171 -15.35292 -15.30385 -15.19789 -14.78286 -14.38260 -14.14254 -13.86614 -13.83531 -13.51483 -13.46865 -13.00305 -12.92747 -12.80804 -12.58921 -12.24689 -12.21242 -12.05195 -12.03731 -11.94176 -11.75153 -11.55500 -11.43528 -11.38890 -11.09070 -10.96471 -10.23960 -9.63881 -9.46014 -8.68473 -6.39290 0.08761 0.77868 0.78176 0.95395 1.40327 1.45697 1.56356 1.75129 1.79592 2.05555 2.20976 2.71251 2.77012 3.41299 3.61758 3.87016 3.89512 3.96981 4.01133 4.08528 4.34649 4.40267 4.61716 4.66445 4.67089 4.79018 4.80402 4.92360 5.04065 5.07909 5.10765 5.16740 5.22245 5.25743 5.28114 5.36480 5.43447 5.47389 5.79237 5.88940 6.00058 6.21169 6.40148 6.52177 6.72493 6.86066 6.87350 6.91675 7.23687 8.29594 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.029756 B = 0.001843 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.763207 B =15187.881148 C =16027.089417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.129 3.871 4 N -0.712 5.712 5 C 0.690 3.310 6 O -0.588 6.588 7 N -0.664 5.664 8 C 0.528 3.472 9 O -0.502 6.502 10 C 0.045 3.955 11 O -0.343 6.343 12 C 0.525 3.475 13 O -0.530 6.530 14 C -0.129 4.129 15 C -0.187 4.187 16 C -0.100 4.100 17 C -0.204 4.204 18 C 0.066 3.934 19 C -0.491 4.491 20 H 0.087 0.913 21 C 0.032 3.968 22 N -0.824 5.824 23 Si 0.985 3.015 24 H -0.253 1.253 25 H -0.267 1.267 26 H -0.265 1.265 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.421 0.579 36 H 0.439 0.561 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.290 0.710 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.791 -18.398 2.034 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C 0.006 3.994 4 N -0.371 5.371 5 C 0.390 3.610 6 O -0.464 6.464 7 N -0.334 5.334 8 C 0.313 3.687 9 O -0.371 6.371 10 C -0.031 4.031 11 O -0.259 6.259 12 C 0.372 3.628 13 O -0.421 6.421 14 C -0.130 4.130 15 C -0.206 4.206 16 C -0.118 4.118 17 C -0.223 4.223 18 C 0.064 3.936 19 C -0.520 4.520 20 H 0.105 0.895 21 C -0.183 4.183 22 N -0.449 5.449 23 Si 0.805 3.195 24 H -0.176 1.176 25 H -0.192 1.192 26 H -0.190 1.190 27 C -0.136 4.136 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.260 0.740 36 H 0.279 0.721 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.153 0.847 41 H 0.134 0.866 42 H 0.100 0.900 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.476 -17.315 1.885 24.673 hybrid contribution 1.170 -0.851 -0.066 1.448 sum -16.306 -18.167 1.819 24.479 Atomic orbital electron populations 1.21708 0.94334 1.02882 1.02153 1.21681 0.96991 0.93296 1.04161 1.21473 0.76941 0.99339 1.01693 1.45081 1.07954 1.06342 1.77694 1.16328 0.81373 0.85206 0.78053 1.91073 1.68059 1.32351 1.54898 1.43569 1.06436 1.11426 1.71953 1.20529 0.89636 0.83288 0.75217 1.90882 1.70509 1.32537 1.43183 1.22915 0.89156 0.82632 1.08428 1.86623 1.23929 1.30750 1.84586 1.21530 0.79456 0.90380 0.71422 1.90747 1.60612 1.42839 1.47912 1.19033 0.94152 0.89287 1.10547 1.20922 0.98343 0.91931 1.09433 1.20923 0.94961 0.96483 0.99434 1.21490 0.93390 0.98013 1.09426 1.17912 0.94459 0.91078 0.90173 1.19880 0.91128 1.03604 1.37422 0.89505 1.26843 1.06339 0.93388 0.91758 1.69858 1.40130 1.12127 1.22794 0.85118 0.75538 0.79596 0.79248 1.17638 1.19227 1.18995 1.21468 0.91773 0.98405 1.01924 0.92687 0.90912 0.92669 0.89820 0.89788 0.92549 0.92585 0.74043 0.72080 0.84791 0.84539 0.86118 0.84705 0.86643 0.89958 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 71.98 0.71 -0.14 16 2 C -0.12 -0.59 6.05 30.59 0.19 -0.40 16 3 C 0.13 1.54 5.67 86.38 0.49 2.03 16 4 N -0.71 -8.14 5.56 -478.61 -2.66 -10.81 16 5 C 0.69 15.24 8.50 179.06 1.52 16.76 16 6 O -0.59 -20.88 14.74 18.91 0.28 -20.60 16 7 N -0.66 -11.11 5.24 -440.53 -2.31 -13.42 16 8 C 0.53 14.15 7.85 87.65 0.69 14.84 16 9 O -0.50 -20.06 14.90 26.70 0.40 -19.66 16 10 C 0.05 1.12 5.95 71.23 0.42 1.55 16 11 O -0.34 -12.86 8.99 -49.72 -0.45 -13.30 16 12 C 0.52 22.94 7.90 70.34 0.56 23.49 16 13 O -0.53 -24.06 16.12 19.93 0.32 -23.74 16 14 C -0.13 -6.30 5.87 -20.14 -0.12 -6.42 16 15 C -0.19 -8.42 9.62 22.71 0.22 -8.21 16 16 C -0.10 -4.31 10.01 22.17 0.22 -4.08 16 17 C -0.20 -9.62 9.78 22.77 0.22 -9.40 16 18 C 0.07 3.53 5.57 -21.32 -0.12 3.41 16 19 C -0.49 -25.88 9.05 23.47 0.21 -25.66 16 20 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 21 C 0.03 1.60 5.14 85.25 0.44 2.04 16 22 N -0.82 -43.57 10.95 21.82 0.24 -43.33 16 23 Si 0.98 37.75 29.60 68.60 2.03 39.78 16 24 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 25 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 26 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 27 C -0.12 -6.27 8.23 23.02 0.19 -6.08 16 28 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.42 1.04 8.49 -92.70 -0.79 0.25 16 36 H 0.44 2.03 8.71 -92.71 -0.81 1.22 16 37 H 0.13 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.14 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.12 5.09 7.59 -2.91 -0.02 5.07 16 40 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 42 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 43 H 0.11 6.55 5.74 -2.91 -0.02 6.54 16 Total: -1.00 -83.20 378.66 3.17 -80.03 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -0.53 Total: 21.32 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 5.85 Total: 3.73 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -4.73 Total: -67.55 kcal Atomic # 8 Polarization: -77.85 SS G_CDS: 0.55 Total: -77.30 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -83.20 3.17 -80.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051534718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.601 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds