Wall clock time and date at job start Tue Mar 31 2020 18:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47271 * 2 1 4 4 C 1.50702 * 109.47087 * 240.00495 * 2 1 3 5 5 N 1.30925 * 126.40362 * 107.94145 * 4 2 1 6 6 C 1.35395 * 105.57812 * 179.97438 * 5 4 2 7 7 C 1.47735 * 126.44965 * 179.97438 * 6 5 4 8 8 C 1.34852 * 125.27173 * 180.02562 * 7 6 5 9 9 C 1.37819 * 114.72405 * 180.02562 * 8 7 6 10 10 C 1.33720 * 115.07375 * 0.02562 * 9 8 7 11 11 S 1.75870 * 109.74233 * 359.97438 * 10 9 8 12 12 N 1.31035 * 107.10151 * 0.26464 * 6 5 4 13 13 O 1.21297 * 110.04282 * 359.53924 * 12 6 5 14 14 N 1.46898 * 109.47121 * 120.00437 * 2 1 3 15 15 C 1.46897 * 111.00017 * 297.29713 * 14 2 1 16 16 C 1.53235 * 109.34026 * 172.75009 * 15 14 2 17 17 N 1.47077 * 108.52718 * 53.82698 * 16 15 14 18 18 C 1.36939 * 120.88306 * 128.83495 * 17 16 15 19 19 H 1.08001 * 120.00180 * 208.94331 * 18 17 16 20 20 C 1.38812 * 119.99797 * 28.93947 * 18 17 16 21 21 N 1.31623 * 119.99815 * 17.26546 * 20 18 17 22 22 Si 1.86799 * 120.00060 * 197.25837 * 20 18 17 23 23 H 1.48497 * 109.47195 * 90.00299 * 22 20 18 24 24 H 1.48501 * 109.47305 * 210.00534 * 22 20 18 25 25 H 1.48503 * 109.47225 * 330.00450 * 22 20 18 26 26 C 1.47078 * 118.23711 * 308.81986 * 17 16 15 27 27 C 1.46897 * 110.99908 * 172.99689 * 14 2 1 28 28 H 1.09000 * 109.47335 * 59.99837 * 1 2 3 29 29 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47243 * 299.99494 * 1 2 3 31 31 H 1.08002 * 122.64054 * 0.04563 * 8 7 6 32 32 H 1.08007 * 122.46790 * 180.02562 * 9 8 7 33 33 H 1.07993 * 125.13050 * 180.26964 * 10 9 8 34 34 H 1.09004 * 109.49297 * 292.70881 * 15 14 2 35 35 H 1.08998 * 109.49329 * 52.78352 * 15 14 2 36 36 H 1.08998 * 109.62781 * 294.11590 * 16 15 14 37 37 H 1.08999 * 109.63005 * 173.53933 * 16 15 14 38 38 H 0.97006 * 119.99654 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.62939 * 291.47454 * 26 17 16 40 40 H 1.09002 * 109.63364 * 170.88798 * 26 17 16 41 41 H 1.09004 * 109.49654 * 307.21101 * 27 14 2 42 42 H 1.08997 * 109.50008 * 67.26691 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 2.5973 -0.1542 -2.2725 6 6 2.8799 -1.1721 -3.1194 7 6 3.5258 -1.0588 -4.4432 8 6 3.7959 -2.0903 -5.2687 9 6 4.4050 -1.7364 -6.4533 10 6 4.6353 -0.4278 -6.6032 11 16 4.0627 0.4424 -5.1862 12 7 2.4668 -2.2759 -2.5466 13 8 1.9847 -2.0261 -1.4620 14 7 2.0196 -0.6926 1.1994 15 6 1.6021 0.0098 2.4202 16 6 1.9736 -0.8347 3.6437 17 7 3.4067 -1.1574 3.5711 18 6 4.2348 -0.9231 4.6363 19 1 5.2801 -0.7082 4.4706 20 6 3.7305 -0.9616 5.9290 21 7 2.5738 -1.5428 6.1671 22 14 4.6936 -0.1888 7.3307 23 1 4.2923 1.2328 7.4823 24 1 4.4076 -0.9210 8.5906 25 1 6.1466 -0.2639 7.0334 26 6 3.9268 -1.7388 2.3243 27 6 3.4784 -0.8587 1.1526 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.5537 -3.1133 -5.0212 32 1 4.6764 -2.4626 -7.2053 33 1 5.0983 0.0268 -7.4664 34 1 2.1080 0.9737 2.4763 35 1 0.5235 0.1654 2.3994 36 1 1.3905 -1.7556 3.6437 37 1 1.7711 -0.2698 4.5536 38 1 2.2216 -1.5700 7.0706 39 1 3.5314 -2.7466 2.1973 40 1 5.0157 -1.7716 2.3617 41 1 3.7606 -1.3330 0.2126 42 1 3.9582 0.1172 1.2260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104088147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:50 Heat of formation + Delta-G solvation = 145.710800 kcal Electronic energy + Delta-G solvation = -26184.931628 eV Core-core repulsion = 22489.434827 eV Total energy + Delta-G solvation = -3695.496801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.57218 -38.68536 -38.20608 -35.95155 -35.22455 -32.89292 -31.70621 -30.12183 -30.01953 -29.46255 -26.27828 -25.43160 -24.68025 -23.48272 -22.91094 -22.36584 -21.17872 -19.29550 -19.13717 -18.42873 -18.08378 -16.87814 -16.72929 -15.99716 -15.51756 -15.40603 -14.62686 -14.36438 -14.04367 -13.75820 -13.66497 -13.54175 -13.27999 -13.07167 -12.93272 -12.68714 -12.37519 -12.27593 -12.15023 -11.90693 -11.61331 -11.37739 -11.24628 -11.15543 -11.03136 -10.79469 -10.54676 -10.40887 -10.32630 -10.16169 -9.80482 -9.66641 -8.87369 -8.83987 -8.54353 -8.09340 -6.68770 -5.81832 -3.24691 0.20160 1.12465 1.18179 1.61674 2.00475 2.67237 2.74912 3.21819 3.36346 3.43663 3.44796 3.84128 4.22784 4.47663 4.65001 4.70826 4.94737 5.07479 5.11931 5.20601 5.28480 5.35751 5.37513 5.56436 5.65034 5.67459 5.74772 5.79146 5.83588 5.92353 6.01794 6.02372 6.06925 6.10607 6.21644 6.46769 6.58402 6.87247 7.12013 7.27538 7.49907 7.59043 7.78400 8.06197 8.40912 9.17901 9.80145 10.39931 11.27264 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.002524 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.898486 B =11089.297671 C =11569.299466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.166 3.834 3 H 0.084 0.916 4 C 0.217 3.783 5 N -0.483 5.483 6 C 0.230 3.770 7 C -0.125 4.125 8 C -0.095 4.095 9 C -0.138 4.138 10 C -0.213 4.213 11 S 0.184 5.816 12 N -0.371 5.371 13 O 0.104 5.896 14 N -0.523 5.523 15 C 0.034 3.966 16 C 0.180 3.820 17 N -0.593 5.593 18 C -0.256 4.256 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.152 3.848 27 C 0.043 3.957 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.087 0.913 38 H 0.254 0.746 39 H 0.029 0.971 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 3.846 -23.109 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.056 3.944 3 H 0.102 0.898 4 C -0.004 4.004 5 N -0.217 5.217 6 C -0.040 4.040 7 C -0.244 4.244 8 C -0.129 4.129 9 C -0.168 4.168 10 C -0.350 4.350 11 S 0.448 5.552 12 N -0.076 5.076 13 O 0.042 5.958 14 N -0.250 5.250 15 C -0.094 4.094 16 C 0.054 3.946 17 N -0.317 5.317 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.025 3.975 27 C -0.086 4.086 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.188 0.812 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.802 4.440 -23.090 23.581 hybrid contribution 0.872 -0.344 0.364 1.006 sum -0.930 4.095 -22.726 23.110 Atomic orbital electron populations 1.21930 0.91344 1.04114 1.03012 1.20285 0.96755 0.94304 0.83082 0.89821 1.28609 0.93698 0.81102 0.96957 1.72063 1.17626 1.29697 1.02305 1.22658 1.00870 0.84772 0.95708 1.21284 1.09925 0.98608 0.94612 1.20368 0.99384 0.99954 0.93243 1.20034 1.02375 0.95986 0.98418 1.26049 1.07880 0.97930 1.03166 1.84481 1.55049 1.06477 1.09164 1.75043 1.14787 1.22503 0.95291 1.85374 1.57113 1.26961 1.26387 1.62178 1.13114 1.49330 1.00386 1.23062 0.99303 0.96590 0.90448 1.20835 0.84380 0.96291 0.93093 1.44101 1.05287 1.71308 1.10979 1.19167 0.92878 1.41934 0.84534 0.91723 1.25075 0.97694 0.99242 0.97400 1.70037 1.20389 1.43917 1.20092 0.86294 0.79605 0.79000 0.81883 1.21426 1.21718 1.20453 1.20940 0.96936 0.94092 0.85548 1.22698 0.86388 0.99880 0.99671 0.91834 0.90604 0.89896 0.83460 0.83531 0.81160 0.94968 0.90977 0.95065 0.89507 0.93555 0.95327 0.92452 0.93139 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.03 37.15 0.34 -1.28 16 2 C 0.17 2.29 2.62 -68.87 -0.18 2.11 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.22 3.23 5.43 -12.97 -0.07 3.16 16 5 N -0.48 -7.38 11.58 -9.88 -0.11 -7.50 16 6 C 0.23 3.46 8.02 -156.04 -1.25 2.21 16 7 C -0.13 -1.58 6.44 -36.90 -0.24 -1.81 16 8 C -0.09 -1.00 10.05 -40.94 -0.41 -1.41 16 9 C -0.14 -1.12 10.16 -41.32 -0.42 -1.54 16 10 C -0.21 -1.62 11.23 29.15 0.33 -1.29 16 11 S 0.18 1.85 23.32 -107.50 -2.51 -0.66 16 12 N -0.37 -5.86 12.16 30.99 0.38 -5.48 16 13 O 0.10 1.65 11.07 17.99 0.20 1.85 16 14 N -0.52 -8.76 4.49 -227.74 -1.02 -9.78 16 15 C 0.03 0.60 5.44 -3.70 -0.02 0.58 16 16 C 0.18 4.12 5.40 -3.61 -0.02 4.10 16 17 N -0.59 -14.69 3.02 -172.02 -0.52 -15.21 16 18 C -0.26 -6.93 9.60 -15.06 -0.14 -7.07 16 19 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 20 C 0.00 0.14 4.91 -17.43 -0.09 0.05 16 21 N -0.90 -25.64 11.35 55.49 0.63 -25.01 16 22 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.15 3.24 6.69 -3.60 -0.02 3.22 16 27 C 0.04 0.78 5.36 -3.70 -0.02 0.76 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.84 6.31 -51.93 -0.33 0.51 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.08 6.04 -51.93 -0.31 0.76 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 2.19 6.32 -51.93 -0.33 1.86 16 38 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.20 7.95 -51.93 -0.41 0.78 16 41 H 0.05 0.89 6.45 -51.93 -0.34 0.55 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -30.47 358.74 -10.30 -40.77 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.49 Total: -2.53 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.22 Total: 1.79 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.65 Total: -62.99 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.20 Total: 1.85 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.51 Total: -0.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.47 -10.30 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104088147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.476 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds