Wall clock time and date at job start Tue Mar 31 2020 18:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47271 * 2 1 4 4 C 1.50702 * 109.47087 * 240.00495 * 2 1 3 5 5 N 1.30925 * 126.40362 * 107.94145 * 4 2 1 6 6 C 1.35395 * 105.57812 * 179.97438 * 5 4 2 7 7 C 1.47735 * 126.44965 * 179.97438 * 6 5 4 8 8 C 1.34852 * 125.27173 * 180.02562 * 7 6 5 9 9 C 1.37819 * 114.72405 * 180.02562 * 8 7 6 10 10 C 1.33720 * 115.07375 * 0.02562 * 9 8 7 11 11 S 1.75870 * 109.74233 * 359.97438 * 10 9 8 12 12 N 1.31035 * 107.10151 * 0.26464 * 6 5 4 13 13 O 1.21297 * 110.04282 * 359.53924 * 12 6 5 14 14 N 1.46898 * 109.47121 * 120.00437 * 2 1 3 15 15 C 1.46897 * 111.00017 * 297.29713 * 14 2 1 16 16 C 1.53235 * 109.34026 * 172.75009 * 15 14 2 17 17 N 1.47077 * 108.52718 * 53.82698 * 16 15 14 18 18 C 1.36939 * 120.88306 * 128.83495 * 17 16 15 19 19 H 1.08001 * 120.00180 * 208.94331 * 18 17 16 20 20 C 1.38812 * 119.99797 * 28.93947 * 18 17 16 21 21 N 1.31623 * 119.99815 * 17.26546 * 20 18 17 22 22 Si 1.86799 * 120.00060 * 197.25837 * 20 18 17 23 23 H 1.48497 * 109.47195 * 90.00299 * 22 20 18 24 24 H 1.48501 * 109.47305 * 210.00534 * 22 20 18 25 25 H 1.48503 * 109.47225 * 330.00450 * 22 20 18 26 26 C 1.47078 * 118.23711 * 308.81986 * 17 16 15 27 27 C 1.46897 * 110.99908 * 172.99689 * 14 2 1 28 28 H 1.09000 * 109.47335 * 59.99837 * 1 2 3 29 29 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47243 * 299.99494 * 1 2 3 31 31 H 1.08002 * 122.64054 * 0.04563 * 8 7 6 32 32 H 1.08007 * 122.46790 * 180.02562 * 9 8 7 33 33 H 1.07993 * 125.13050 * 180.26964 * 10 9 8 34 34 H 1.09004 * 109.49297 * 292.70881 * 15 14 2 35 35 H 1.08998 * 109.49329 * 52.78352 * 15 14 2 36 36 H 1.08998 * 109.62781 * 294.11590 * 16 15 14 37 37 H 1.08999 * 109.63005 * 173.53933 * 16 15 14 38 38 H 0.97006 * 119.99654 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.62939 * 291.47454 * 26 17 16 40 40 H 1.09002 * 109.63364 * 170.88798 * 26 17 16 41 41 H 1.09004 * 109.49654 * 307.21101 * 27 14 2 42 42 H 1.08997 * 109.50008 * 67.26691 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 2.5973 -0.1542 -2.2725 6 6 2.8799 -1.1721 -3.1194 7 6 3.5258 -1.0588 -4.4432 8 6 3.7959 -2.0903 -5.2687 9 6 4.4050 -1.7364 -6.4533 10 6 4.6353 -0.4278 -6.6032 11 16 4.0627 0.4424 -5.1862 12 7 2.4668 -2.2759 -2.5466 13 8 1.9847 -2.0261 -1.4620 14 7 2.0196 -0.6926 1.1994 15 6 1.6021 0.0098 2.4202 16 6 1.9736 -0.8347 3.6437 17 7 3.4067 -1.1574 3.5711 18 6 4.2348 -0.9231 4.6363 19 1 5.2801 -0.7082 4.4706 20 6 3.7305 -0.9616 5.9290 21 7 2.5738 -1.5428 6.1671 22 14 4.6936 -0.1888 7.3307 23 1 4.2923 1.2328 7.4823 24 1 4.4076 -0.9210 8.5906 25 1 6.1466 -0.2639 7.0334 26 6 3.9268 -1.7388 2.3243 27 6 3.4784 -0.8587 1.1526 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.5537 -3.1133 -5.0212 32 1 4.6764 -2.4626 -7.2053 33 1 5.0983 0.0268 -7.4664 34 1 2.1080 0.9737 2.4763 35 1 0.5235 0.1654 2.3994 36 1 1.3905 -1.7556 3.6437 37 1 1.7711 -0.2698 4.5536 38 1 2.2216 -1.5700 7.0706 39 1 3.5314 -2.7466 2.1973 40 1 5.0157 -1.7716 2.3617 41 1 3.7606 -1.3330 0.2126 42 1 3.9582 0.1172 1.2260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104088147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:50 Heat of formation + Delta-G solvation = 125.469982 kcal Electronic energy + Delta-G solvation = -26185.809336 eV Core-core repulsion = 22489.434827 eV Total energy + Delta-G solvation = -3696.374509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.70497 -40.13082 -38.95931 -37.23209 -36.66967 -34.37889 -33.21911 -31.76479 -31.34929 -30.42291 -27.96234 -26.33976 -25.94462 -24.82442 -24.37244 -23.79715 -22.28533 -20.95041 -19.94648 -19.50089 -19.19145 -18.69899 -17.76889 -17.14173 -16.84370 -16.55484 -16.34539 -15.73326 -15.35877 -15.28342 -15.10737 -14.78996 -14.49610 -14.29249 -13.85035 -13.75776 -13.61924 -13.42897 -13.19547 -13.11526 -12.90501 -12.82124 -12.68777 -12.54516 -12.40539 -12.25484 -12.09577 -11.98761 -11.81438 -11.70796 -11.51976 -11.28815 -10.58886 -9.69852 -9.57663 -9.49152 -8.68233 -7.88632 -5.35005 -0.64674 0.08946 0.36133 0.92264 1.10049 1.48068 1.48997 1.57999 1.63046 1.81920 2.15501 2.50623 2.69906 3.03220 3.27135 3.60863 3.64446 3.92248 4.01791 4.10147 4.14171 4.23097 4.33037 4.34619 4.45242 4.52471 4.55448 4.63049 4.66720 4.74976 4.77805 4.90201 4.96195 4.99395 5.09618 5.18626 5.24642 5.34363 5.34970 5.62140 5.69419 5.93045 5.99309 6.37424 6.93168 7.13649 7.81487 8.37372 9.18348 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.002524 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.898486 B =11089.297671 C =11569.299466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.171 3.829 3 H 0.096 0.904 4 C 0.217 3.783 5 N -0.493 5.493 6 C 0.233 3.767 7 C -0.173 4.173 8 C -0.085 4.085 9 C -0.146 4.146 10 C -0.184 4.184 11 S 0.170 5.830 12 N -0.391 5.391 13 O 0.086 5.914 14 N -0.531 5.531 15 C 0.051 3.949 16 C 0.185 3.815 17 N -0.611 5.611 18 C -0.268 4.268 19 H 0.063 0.937 20 C -0.044 4.044 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.150 3.850 27 C 0.060 3.940 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.178 0.822 33 H 0.207 0.793 34 H 0.033 0.967 35 H 0.106 0.894 36 H 0.005 0.995 37 H 0.059 0.941 38 H 0.252 0.748 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 5.174 -25.512 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.061 3.939 3 H 0.114 0.886 4 C -0.004 4.004 5 N -0.227 5.227 6 C -0.037 4.037 7 C -0.292 4.292 8 C -0.121 4.121 9 C -0.175 4.175 10 C -0.321 4.321 11 S 0.434 5.566 12 N -0.100 5.100 13 O 0.028 5.972 14 N -0.258 5.258 15 C -0.077 4.077 16 C 0.060 3.940 17 N -0.335 5.335 18 C -0.398 4.398 19 H 0.080 0.920 20 C -0.240 4.240 21 N -0.576 5.576 22 Si 0.795 3.205 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.024 3.976 27 C -0.070 4.070 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.164 0.836 32 H 0.196 0.804 33 H 0.224 0.776 34 H 0.052 0.948 35 H 0.124 0.876 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.378 5.774 -25.501 26.183 hybrid contribution 0.798 -0.811 0.939 1.475 sum -0.581 4.963 -24.562 25.065 Atomic orbital electron populations 1.21953 0.88971 1.04348 1.04638 1.20418 0.98443 0.94075 0.80989 0.88645 1.28826 0.93392 0.80921 0.97226 1.72066 1.18002 1.30004 1.02625 1.23118 0.99865 0.84323 0.96382 1.21479 1.12698 1.00416 0.94597 1.20645 0.98136 0.99589 0.93698 1.20317 1.02169 0.96952 0.98108 1.26514 1.05623 0.97402 1.02602 1.84479 1.55386 1.06164 1.10523 1.75020 1.16225 1.23123 0.95614 1.85342 1.57719 1.27424 1.26729 1.62041 1.12039 1.50346 1.01366 1.22764 1.01287 0.95076 0.88562 1.20648 0.83281 0.95498 0.94607 1.44371 1.05840 1.71905 1.11414 1.19450 0.93250 1.41564 0.85572 0.91952 1.25803 0.98765 0.99872 0.99565 1.70182 1.21876 1.45217 1.20302 0.85279 0.78567 0.78031 0.78595 1.20839 1.22092 1.19714 1.20991 0.96891 0.94049 0.85673 1.22385 0.87539 0.98920 0.98126 0.89902 0.91093 0.88526 0.83615 0.80438 0.77561 0.94841 0.87622 0.97700 0.92229 0.93891 0.96675 0.92531 0.92523 0.94827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.03 71.98 0.65 -2.14 16 2 C 0.17 4.42 2.62 44.17 0.12 4.54 16 3 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.22 6.32 5.43 88.35 0.48 6.80 16 5 N -0.49 -14.81 11.58 -302.26 -3.50 -18.31 16 6 C 0.23 7.00 8.02 136.96 1.10 8.09 16 7 C -0.17 -4.24 6.44 24.00 0.15 -4.08 16 8 C -0.08 -1.67 10.05 21.39 0.22 -1.46 16 9 C -0.15 -1.92 10.16 21.14 0.21 -1.70 16 10 C -0.18 -2.16 11.23 66.79 0.75 -1.41 16 11 S 0.17 3.15 23.32 -56.49 -1.32 1.84 16 12 N -0.39 -12.48 12.16 -58.77 -0.71 -13.19 16 13 O 0.09 2.75 11.07 74.45 0.82 3.57 16 14 N -0.53 -17.36 4.49 -874.43 -3.93 -21.29 16 15 C 0.05 1.76 5.44 86.38 0.47 2.23 16 16 C 0.19 8.66 5.40 86.35 0.47 9.13 16 17 N -0.61 -30.94 3.02 -698.13 -2.11 -33.06 16 18 C -0.27 -14.80 9.60 84.03 0.81 -13.99 16 19 H 0.06 3.39 7.89 -2.91 -0.02 3.37 16 20 C -0.04 -2.43 4.91 84.86 0.42 -2.01 16 21 N -0.93 -54.33 11.35 21.65 0.25 -54.09 16 22 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 26 C 0.15 6.55 6.69 86.35 0.58 7.13 16 27 C 0.06 2.16 5.36 86.39 0.46 2.63 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.66 6.31 -2.39 -0.02 1.64 16 31 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.11 2.93 6.04 -2.39 -0.01 2.91 16 36 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.06 3.09 6.32 -2.39 -0.02 3.08 16 38 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 41 H 0.06 1.99 6.45 -2.39 -0.02 1.97 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -67.91 358.74 -0.55 -68.46 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.04 Total: 5.83 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.88 Total: 13.75 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -10.01 Total: -139.93 kcal Atomic # 8 Polarization: 2.75 SS G_CDS: 0.82 Total: 3.57 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.84 kcal Total: -67.91 -0.55 -68.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104088147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.928 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds