Wall clock time and date at job start Tue Mar 31 2020 17:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 N 1.46510 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.36875 * 119.99531 * 263.02984 * 4 3 2 6 6 H 1.08004 * 120.00762 * 29.09239 * 5 4 3 7 7 C 1.39007 * 119.99675 * 209.09036 * 5 4 3 8 8 N 1.31407 * 119.99710 * 18.65682 * 7 5 4 9 9 Si 1.86800 * 119.99810 * 198.65940 * 7 5 4 10 10 H 1.48490 * 109.47170 * 65.00180 * 9 7 5 11 11 H 1.48500 * 109.46720 * 185.00284 * 9 7 5 12 12 H 1.48500 * 109.47159 * 304.99900 * 9 7 5 13 13 C 1.34773 * 119.99763 * 83.02431 * 4 3 2 14 14 O 1.21774 * 119.99449 * 182.49664 * 13 4 3 15 15 C 1.46302 * 120.00474 * 2.49967 * 13 4 3 16 16 S 1.76189 * 126.11605 * 351.52037 * 15 13 4 17 17 C 1.70924 * 90.41944 * 179.97438 * 16 15 13 18 18 C 1.47681 * 124.74431 * 180.02562 * 17 16 15 19 19 C 1.41167 * 126.37698 * 5.37824 * 18 17 16 20 20 N 1.30533 * 108.08919 * 179.97438 * 19 18 17 21 21 N 1.39950 * 108.85350 * 0.02562 * 20 19 18 22 22 C 1.46498 * 125.79700 * 180.02562 * 21 20 19 23 23 C 1.34591 * 108.40542 * 359.76349 * 21 20 19 24 24 N 1.30422 * 110.50803 * 0.34859 * 17 16 15 25 25 C 1.30643 * 117.29080 * 359.72232 * 24 17 16 26 26 C 1.50694 * 122.99535 * 180.02562 * 25 24 17 27 27 H 1.08999 * 109.47327 * 300.00625 * 1 2 3 28 28 H 1.09009 * 109.46798 * 60.00254 * 1 2 3 29 29 H 1.08991 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47327 * 239.99375 * 2 1 3 31 31 H 1.09006 * 109.46612 * 119.99244 * 2 1 3 32 32 H 1.08999 * 109.47531 * 59.99500 * 3 2 1 33 33 H 1.08998 * 109.47039 * 299.99070 * 3 2 1 34 34 H 0.97002 * 119.99520 * 184.97106 * 8 7 5 35 35 H 1.08001 * 125.95589 * 359.96885 * 19 18 17 36 36 H 1.08999 * 109.47879 * 89.96669 * 22 21 20 37 37 H 1.08996 * 109.47197 * 209.97541 * 22 21 20 38 38 H 1.09002 * 109.46970 * 329.96864 * 22 21 20 39 39 H 1.07998 * 126.30053 * 180.25626 * 23 21 20 40 40 H 1.08997 * 109.47157 * 270.00033 * 26 25 24 41 41 H 1.09003 * 109.46837 * 30.00313 * 26 25 24 42 42 H 1.09004 * 109.47350 * 149.99920 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1889 1.5865 1.1775 6 1 3.7507 1.2416 2.1025 7 6 5.4474 2.1766 1.1824 8 7 5.8305 2.9154 0.1654 9 14 6.5940 1.9195 2.6345 10 1 6.9732 0.4863 2.7180 11 1 7.8151 2.7449 2.4531 12 1 5.9052 2.3231 3.8866 13 6 4.1794 1.3005 -1.1576 14 8 5.3963 1.2548 -1.1520 15 6 3.4495 1.2014 -2.4217 16 16 1.7046 1.0384 -2.6034 17 6 1.8717 1.0100 -4.3042 18 6 0.7512 0.8845 -5.2580 19 6 -0.6237 0.8755 -4.9380 20 7 -1.2975 0.7483 -6.0487 21 7 -0.3973 0.6702 -7.1174 22 6 -0.7553 0.5232 -8.5303 23 6 0.8530 0.7590 -6.6271 24 7 3.1277 1.1078 -4.6416 25 6 4.0011 1.2115 -3.6756 26 6 5.4834 1.3321 -3.9190 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 6.7338 3.2677 0.1349 35 1 -1.0447 0.9593 -3.9469 36 1 -0.8736 1.5091 -8.9798 37 1 0.0332 -0.0209 -9.0502 38 1 -1.6919 -0.0282 -8.6123 39 1 1.7678 0.7348 -7.2006 40 1 5.9290 0.3378 -3.9475 41 1 5.6556 1.8350 -4.8706 42 1 5.9377 1.9110 -3.1148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115341664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:12 Heat of formation + Delta-G solvation = 113.684359 kcal Electronic energy + Delta-G solvation = -26638.729315 eV Core-core repulsion = 22941.843744 eV Total energy + Delta-G solvation = -3696.885572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16718 -39.13299 -38.14765 -35.00656 -33.66933 -32.94688 -31.57478 -31.25648 -29.46434 -27.67801 -27.30743 -25.95618 -24.33374 -23.85258 -21.62679 -21.19937 -20.66630 -20.37745 -18.10446 -17.74386 -16.69502 -16.26512 -15.78680 -15.62940 -15.07171 -14.63730 -14.57714 -14.38094 -13.89009 -13.64677 -13.44641 -13.18973 -13.00639 -12.87668 -12.73447 -12.60668 -12.10760 -11.94458 -11.72490 -11.66392 -11.54360 -11.13406 -11.00278 -10.87149 -10.80414 -10.71305 -10.63398 -10.33944 -10.23143 -9.59006 -9.17974 -9.15584 -8.88888 -8.35854 -8.06229 -7.41147 -7.09056 -6.07598 -3.86509 0.88705 1.82976 1.97194 2.36658 2.41386 2.66885 3.28725 3.34889 3.37081 3.63480 4.21525 4.33252 4.58684 4.75463 4.84200 4.87282 4.89179 4.97118 5.12383 5.21401 5.33743 5.43301 5.50449 5.63875 5.76202 5.80806 5.84013 5.95374 6.08463 6.14584 6.21453 6.30771 6.40097 6.43300 6.52674 6.57052 6.69380 6.75531 6.81598 7.20793 7.40346 7.53660 8.04583 8.45873 8.86200 9.06598 9.50990 10.26776 10.83460 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003615 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.606011 B = 7743.077579 C = 8902.508945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.093 3.907 4 N -0.437 5.437 5 C -0.311 4.311 6 H 0.090 0.910 7 C 0.037 3.963 8 N -0.774 5.774 9 Si 0.917 3.083 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.494 3.506 14 O -0.497 6.497 15 C -0.236 4.236 16 S 0.179 5.821 17 C 0.046 3.954 18 C -0.164 4.164 19 C 0.070 3.930 20 N -0.299 5.299 21 N -0.373 5.373 22 C 0.102 3.898 23 C 0.097 3.903 24 N -0.480 5.480 25 C 0.094 3.906 26 C -0.070 4.070 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.267 0.733 35 H 0.187 0.813 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.184 0.816 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.393 -3.944 -10.816 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C -0.033 4.033 4 N -0.156 5.156 5 C -0.439 4.439 6 H 0.107 0.893 7 C -0.176 4.176 8 N -0.410 5.410 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.282 3.718 14 O -0.374 6.374 15 C -0.361 4.361 16 S 0.438 5.562 17 C -0.224 4.224 18 C -0.179 4.179 19 C -0.118 4.118 20 N -0.119 5.119 21 N -0.154 5.154 22 C -0.040 4.040 23 C -0.054 4.054 24 N -0.195 5.195 25 C -0.044 4.044 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.204 0.796 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.201 0.799 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.598 -3.974 -11.457 18.220 hybrid contribution 2.163 0.107 0.633 2.256 sum -11.435 -3.867 -10.824 16.214 Atomic orbital electron populations 1.21730 0.95605 1.01483 1.01584 1.22137 0.95625 0.98091 1.02845 1.21933 0.84181 0.95989 1.01216 1.43326 1.02642 1.62877 1.06794 1.19309 1.01314 1.37509 0.85769 0.89255 1.25078 0.98974 0.95726 0.97787 1.70097 1.18399 1.23933 1.28597 0.86152 0.79832 0.78458 0.81113 1.20268 1.21106 1.20260 1.16085 0.86774 0.88071 0.80820 1.90642 1.12029 1.50235 1.84511 1.26532 0.94026 1.14958 1.00612 1.84235 1.06560 1.66722 0.98670 1.24515 0.92832 1.06279 0.98823 1.18142 0.90909 1.17715 0.91115 1.23940 0.91062 0.98947 0.97824 1.77128 1.16360 1.24900 0.93550 1.48276 1.04060 1.55947 1.07139 1.21887 1.03290 1.03242 0.75533 1.22934 0.89163 0.98903 0.94421 1.66114 0.99786 1.16918 1.36714 1.20480 0.97155 1.00895 0.85827 1.20384 0.87538 1.02500 1.02521 0.92643 0.92716 0.92729 0.91456 0.91130 0.89884 0.91981 0.92266 0.79614 0.90602 0.89301 0.89179 0.79934 0.91715 0.92570 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.78 37.16 0.36 -1.41 16 2 C -0.15 -2.38 5.19 -26.73 -0.14 -2.52 16 3 C 0.09 1.78 4.93 -4.04 -0.02 1.76 16 4 N -0.44 -10.73 2.61 -116.42 -0.30 -11.03 16 5 C -0.31 -8.13 9.44 -15.02 -0.14 -8.27 16 6 H 0.09 2.18 7.90 -52.48 -0.41 1.76 16 7 C 0.04 0.99 4.48 -17.45 -0.08 0.91 16 8 N -0.77 -22.18 10.32 55.50 0.57 -21.60 16 9 Si 0.92 20.98 29.60 -169.99 -5.03 15.95 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.49 12.80 6.87 -13.02 -0.09 12.71 16 14 O -0.50 -14.36 10.82 5.12 0.06 -14.31 16 15 C -0.24 -5.29 6.16 -36.79 -0.23 -5.52 16 16 S 0.18 3.09 14.33 -107.50 -1.54 1.55 16 17 C 0.05 0.82 7.23 -14.30 -0.10 0.72 16 18 C -0.16 -2.45 6.12 -105.07 -0.64 -3.10 16 19 C 0.07 0.94 11.76 -16.99 -0.20 0.74 16 20 N -0.30 -3.97 12.51 30.85 0.39 -3.58 16 21 N -0.37 -4.24 3.99 -67.57 -0.27 -4.51 16 22 C 0.10 0.64 11.45 59.85 0.69 1.32 16 23 C 0.10 1.24 11.45 -16.48 -0.19 1.05 16 24 N -0.48 -9.50 10.45 -8.20 -0.09 -9.58 16 25 C 0.09 2.03 6.83 -83.55 -0.57 1.46 16 26 C -0.07 -1.44 9.62 36.00 0.35 -1.09 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.61 7.18 -51.92 -0.37 0.24 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.16 6.10 -47.47 -0.29 0.87 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.50 7.98 -51.93 -0.41 1.08 16 33 H 0.06 1.16 4.43 -22.41 -0.10 1.06 16 34 H 0.27 7.36 8.32 -40.82 -0.34 7.02 16 35 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 2.34 6.26 -51.93 -0.33 2.02 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -33.95 356.65 -7.13 -41.08 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.28 Total: 1.90 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.01 Total: -1.23 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.30 Total: -50.31 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.06 Total: -14.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.54 Total: 1.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.95 -7.13 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115341664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.763 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds