Wall clock time and date at job start Tue Mar 31 2020 17:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47119 * 2 1 4 4 N 1.46510 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.36875 * 119.99531 * 263.02984 * 4 3 2 6 6 H 1.08004 * 120.00762 * 29.09239 * 5 4 3 7 7 C 1.39007 * 119.99675 * 209.09036 * 5 4 3 8 8 N 1.31407 * 119.99710 * 18.65682 * 7 5 4 9 9 Si 1.86800 * 119.99810 * 198.65940 * 7 5 4 10 10 H 1.48490 * 109.47170 * 65.00180 * 9 7 5 11 11 H 1.48500 * 109.46720 * 185.00284 * 9 7 5 12 12 H 1.48500 * 109.47159 * 304.99900 * 9 7 5 13 13 C 1.34773 * 119.99763 * 83.02431 * 4 3 2 14 14 O 1.21774 * 119.99449 * 182.49664 * 13 4 3 15 15 C 1.46302 * 120.00474 * 2.49967 * 13 4 3 16 16 S 1.76189 * 126.11605 * 351.52037 * 15 13 4 17 17 C 1.70924 * 90.41944 * 179.97438 * 16 15 13 18 18 C 1.47681 * 124.74431 * 180.02562 * 17 16 15 19 19 C 1.41167 * 126.37698 * 5.37824 * 18 17 16 20 20 N 1.30533 * 108.08919 * 179.97438 * 19 18 17 21 21 N 1.39950 * 108.85350 * 0.02562 * 20 19 18 22 22 C 1.46498 * 125.79700 * 180.02562 * 21 20 19 23 23 C 1.34591 * 108.40542 * 359.76349 * 21 20 19 24 24 N 1.30422 * 110.50803 * 0.34859 * 17 16 15 25 25 C 1.30643 * 117.29080 * 359.72232 * 24 17 16 26 26 C 1.50694 * 122.99535 * 180.02562 * 25 24 17 27 27 H 1.08999 * 109.47327 * 300.00625 * 1 2 3 28 28 H 1.09009 * 109.46798 * 60.00254 * 1 2 3 29 29 H 1.08991 * 109.47528 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47327 * 239.99375 * 2 1 3 31 31 H 1.09006 * 109.46612 * 119.99244 * 2 1 3 32 32 H 1.08999 * 109.47531 * 59.99500 * 3 2 1 33 33 H 1.08998 * 109.47039 * 299.99070 * 3 2 1 34 34 H 0.97002 * 119.99520 * 184.97106 * 8 7 5 35 35 H 1.08001 * 125.95589 * 359.96885 * 19 18 17 36 36 H 1.08999 * 109.47879 * 89.96669 * 22 21 20 37 37 H 1.08996 * 109.47197 * 209.97541 * 22 21 20 38 38 H 1.09002 * 109.46970 * 329.96864 * 22 21 20 39 39 H 1.07998 * 126.30053 * 180.25626 * 23 21 20 40 40 H 1.08997 * 109.47157 * 270.00033 * 26 25 24 41 41 H 1.09003 * 109.46837 * 30.00313 * 26 25 24 42 42 H 1.09004 * 109.47350 * 149.99920 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1889 1.5865 1.1775 6 1 3.7507 1.2416 2.1025 7 6 5.4474 2.1766 1.1824 8 7 5.8305 2.9154 0.1654 9 14 6.5940 1.9195 2.6345 10 1 6.9732 0.4863 2.7180 11 1 7.8151 2.7449 2.4531 12 1 5.9052 2.3231 3.8866 13 6 4.1794 1.3005 -1.1576 14 8 5.3963 1.2548 -1.1520 15 6 3.4495 1.2014 -2.4217 16 16 1.7046 1.0384 -2.6034 17 6 1.8717 1.0100 -4.3042 18 6 0.7512 0.8845 -5.2580 19 6 -0.6237 0.8755 -4.9380 20 7 -1.2975 0.7483 -6.0487 21 7 -0.3973 0.6702 -7.1174 22 6 -0.7553 0.5232 -8.5303 23 6 0.8530 0.7590 -6.6271 24 7 3.1277 1.1078 -4.6416 25 6 4.0011 1.2115 -3.6756 26 6 5.4834 1.3321 -3.9190 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6768 1.9562 -0.8901 34 1 6.7338 3.2677 0.1349 35 1 -1.0447 0.9593 -3.9469 36 1 -0.8736 1.5091 -8.9798 37 1 0.0332 -0.0209 -9.0502 38 1 -1.6919 -0.0282 -8.6123 39 1 1.7678 0.7348 -7.2006 40 1 5.9290 0.3378 -3.9475 41 1 5.6556 1.8350 -4.8706 42 1 5.9377 1.9110 -3.1148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115341664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:11 Heat of formation + Delta-G solvation = 91.421006 kcal Electronic energy + Delta-G solvation = -26639.694727 eV Core-core repulsion = 22941.843744 eV Total energy + Delta-G solvation = -3697.850983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.16949 -40.78671 -39.83009 -36.69600 -34.85661 -34.40757 -32.96531 -32.88980 -30.70961 -29.38956 -28.18755 -27.48174 -26.01429 -25.16074 -23.08532 -22.38661 -21.85339 -21.75507 -19.76158 -19.10454 -18.15226 -17.76767 -17.50519 -16.52480 -16.38490 -16.31078 -15.98231 -15.64991 -15.51575 -15.06379 -14.97933 -14.42724 -14.34236 -13.92637 -13.73670 -13.66620 -13.53777 -13.32950 -13.32588 -13.20774 -13.02085 -12.79177 -12.63754 -12.51981 -12.24139 -12.10044 -12.00859 -11.87591 -11.71432 -11.03658 -10.57058 -10.47768 -10.37499 -9.97289 -9.80272 -9.04650 -8.78024 -8.04344 -5.88958 -0.56406 0.48403 0.81478 0.90052 1.38208 1.43874 1.51622 1.53919 1.54935 2.21989 2.37742 2.88984 3.10809 3.22909 3.29958 3.56155 3.93058 3.95075 4.14790 4.22279 4.26103 4.28492 4.36079 4.46174 4.51992 4.62768 4.68946 4.72680 4.75446 4.78030 4.79682 4.99843 5.01758 5.06464 5.23771 5.29775 5.42184 5.43230 5.53376 5.56099 5.93695 6.10446 6.54946 6.87554 6.96154 7.19906 7.62273 8.38179 8.87430 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003615 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.606011 B = 7743.077579 C = 8902.508945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.089 3.911 4 N -0.455 5.455 5 C -0.338 4.338 6 H 0.099 0.901 7 C -0.010 4.010 8 N -0.820 5.820 9 Si 0.978 3.022 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.256 1.256 13 C 0.489 3.511 14 O -0.541 6.541 15 C -0.301 4.301 16 S 0.255 5.745 17 C 0.070 3.930 18 C -0.208 4.208 19 C 0.075 3.925 20 N -0.314 5.314 21 N -0.365 5.365 22 C 0.089 3.911 23 C 0.117 3.883 24 N -0.501 5.501 25 C 0.100 3.900 26 C -0.064 4.064 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.257 0.743 35 H 0.207 0.793 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.203 0.797 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 -4.881 -12.671 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C -0.036 4.036 4 N -0.174 5.174 5 C -0.466 4.466 6 H 0.117 0.883 7 C -0.218 4.218 8 N -0.457 5.457 9 Si 0.803 3.197 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.180 1.180 13 C 0.278 3.722 14 O -0.421 6.421 15 C -0.426 4.426 16 S 0.516 5.484 17 C -0.201 4.201 18 C -0.223 4.223 19 C -0.113 4.113 20 N -0.135 5.135 21 N -0.144 5.144 22 C -0.050 4.050 23 C -0.037 4.037 24 N -0.217 5.217 25 C -0.039 4.039 26 C -0.123 4.123 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.223 0.777 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.219 0.781 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.039 -4.912 -13.291 22.161 hybrid contribution 2.913 0.312 0.802 3.037 sum -14.126 -4.600 -12.490 19.409 Atomic orbital electron populations 1.21719 0.92005 1.03192 1.02860 1.22062 0.98565 0.95520 1.01774 1.22150 0.81388 0.98212 1.01838 1.43499 1.04760 1.63081 1.06086 1.19605 1.02223 1.38038 0.86779 0.88295 1.25940 1.00602 0.95360 0.99903 1.70232 1.17985 1.26312 1.31220 0.85230 0.77853 0.77543 0.79106 1.20960 1.21689 1.17976 1.16641 0.86775 0.86576 0.82201 1.90592 1.14084 1.51655 1.85774 1.26242 0.97761 1.19154 0.99433 1.83690 1.01876 1.65300 0.97550 1.25168 0.93059 1.01775 1.00097 1.18235 0.90679 1.21618 0.91810 1.24252 0.90198 0.97923 0.98887 1.77130 1.17025 1.25321 0.94018 1.48739 1.03349 1.53799 1.08531 1.22361 1.04883 1.04890 0.72908 1.23263 0.90342 0.96207 0.93920 1.66212 1.00269 1.19381 1.35848 1.20699 0.97819 0.99142 0.86212 1.20258 0.87426 1.02414 1.02233 0.91283 0.91541 0.90818 0.92787 0.92035 0.89005 0.91518 0.93304 0.77654 0.88988 0.86614 0.88149 0.78073 0.91196 0.90270 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.78 71.98 0.70 -2.26 16 2 C -0.14 -4.37 5.19 30.59 0.16 -4.21 16 3 C 0.09 3.40 4.93 86.38 0.43 3.83 16 4 N -0.46 -23.15 2.61 -640.43 -1.67 -24.82 16 5 C -0.34 -18.37 9.44 84.09 0.79 -17.58 16 6 H 0.10 4.95 7.90 -2.91 -0.02 4.93 16 7 C -0.01 -0.57 4.48 84.94 0.38 -0.19 16 8 N -0.82 -49.98 10.32 21.68 0.22 -49.75 16 9 Si 0.98 44.94 29.60 68.60 2.03 46.97 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 13 C 0.49 26.60 6.87 86.34 0.59 27.20 16 14 O -0.54 -33.36 10.82 -4.59 -0.05 -33.41 16 15 C -0.30 -13.80 6.16 24.08 0.15 -13.65 16 16 S 0.25 8.45 14.33 -56.49 -0.81 7.65 16 17 C 0.07 2.33 7.23 87.40 0.63 2.96 16 18 C -0.21 -5.58 6.12 -20.15 -0.12 -5.70 16 19 C 0.08 1.74 11.76 85.61 1.01 2.75 16 20 N -0.31 -7.21 12.51 -56.31 -0.70 -7.92 16 21 N -0.36 -6.82 3.99 -367.68 -1.47 -8.29 16 22 C 0.09 0.73 11.45 127.77 1.46 2.19 16 23 C 0.12 2.54 11.45 84.18 0.96 3.51 16 24 N -0.50 -19.27 10.45 -179.87 -1.88 -21.16 16 25 C 0.10 4.38 6.83 42.44 0.29 4.67 16 26 C -0.06 -2.72 9.62 71.23 0.69 -2.04 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.24 7.18 -2.38 -0.02 1.23 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.82 6.10 -5.22 -0.03 1.79 16 31 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.09 3.28 7.98 -2.39 -0.02 3.26 16 33 H 0.07 2.45 4.43 -21.16 -0.09 2.35 16 34 H 0.26 15.27 8.32 -92.71 -0.77 14.49 16 35 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.20 3.57 8.06 -2.91 -0.02 3.54 16 40 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 41 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.07 3.29 6.26 -2.39 -0.01 3.28 16 Total: -1.00 -78.89 356.65 4.74 -74.16 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.95 Total: 15.12 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 8.12 Total: 1.46 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.50 Total: -111.94 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.05 Total: -33.41 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 8.45 SS G_CDS: -0.81 Total: 7.65 kcal Total: -78.89 4.74 -74.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115341664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.579 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds