Wall clock time and date at job start Tue Mar 31 2020 18:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47016 * 2 1 4 4 O 1.42896 * 109.47056 * 120.00298 * 2 1 3 5 5 C 1.35908 * 117.00427 * 84.78822 * 4 2 1 6 6 C 1.38872 * 119.98045 * 354.62002 * 5 4 2 7 7 C 1.38236 * 120.23508 * 180.02562 * 6 5 4 8 8 C 1.38011 * 120.20759 * 0.02562 * 7 6 5 9 9 C 1.39576 * 119.96282 * 359.97438 * 8 7 6 10 10 C 1.47846 * 120.11507 * 180.02562 * 9 8 7 11 11 N 1.31265 * 126.46234 * 164.97507 * 10 9 8 12 12 N 1.28509 * 109.96021 * 179.97438 * 11 10 9 13 13 C 1.31452 * 110.07929 * 0.02562 * 12 11 10 14 14 S 1.76199 * 126.38332 * 179.97438 * 13 12 11 15 15 C 1.81010 * 99.99964 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.47161 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99474 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99876 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00268 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99603 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47292 * 90.00008 * 20 18 16 22 22 H 1.48496 * 109.46766 * 209.99730 * 20 18 16 23 23 H 1.48501 * 109.47093 * 329.99732 * 20 18 16 24 24 N 1.36560 * 107.23261 * 359.97438 * 13 12 11 25 25 N 1.36597 * 127.17221 * 179.97438 * 24 13 12 26 26 C 1.38441 * 119.98735 * 174.92362 * 5 4 2 27 27 H 1.08993 * 109.47470 * 299.99800 * 1 2 3 28 28 H 1.09001 * 109.47249 * 60.00380 * 1 2 3 29 29 H 1.09001 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47102 * 240.00243 * 2 1 3 31 31 H 1.08993 * 109.46819 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47199 * 299.99992 * 3 2 1 33 33 H 1.09007 * 109.46693 * 59.99899 * 3 2 1 34 34 H 1.08006 * 119.87904 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.89793 * 179.97438 * 7 6 5 36 36 H 1.08004 * 120.01716 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.46898 * 300.00428 * 15 14 13 38 38 H 1.09000 * 109.46678 * 60.00316 * 15 14 13 39 39 H 0.97002 * 120.00323 * 180.02562 * 19 18 16 40 40 H 1.00903 * 111.00344 * 270.03005 * 25 24 13 41 41 H 1.00897 * 111.00062 * 33.97912 * 25 24 13 42 42 H 1.08004 * 120.10370 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1083 -2.0273 1.0993 6 6 1.6522 -2.7024 -0.0253 7 6 1.7529 -4.0791 -0.0992 8 6 2.3069 -4.7919 0.9447 9 6 2.7680 -4.1219 2.0790 10 6 3.3626 -4.8821 3.1990 11 7 4.0752 -4.3891 4.1851 12 7 4.4324 -5.3317 4.9822 13 6 3.9700 -6.4850 4.5532 14 16 4.2051 -8.0549 5.3178 15 6 5.2005 -7.5625 6.7471 16 6 5.5321 -8.7795 7.5717 17 1 5.1784 -9.7526 7.2644 18 6 6.2869 -8.6507 8.7182 19 7 6.7172 -7.4657 9.0926 20 14 6.6984 -10.1595 9.7399 21 1 7.9759 -10.7472 9.2626 22 1 6.8356 -9.7691 11.1661 23 1 5.6110 -11.1614 9.6033 24 7 3.2734 -6.2395 3.4045 25 7 2.6241 -7.1518 2.6222 26 6 2.6610 -2.7329 2.1544 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6765 1.9563 0.8901 34 1 1.2173 -2.1498 -0.8451 35 1 1.3961 -4.5986 -0.9762 36 1 2.3844 -5.8674 0.8835 37 1 6.1230 -7.0945 6.4035 38 1 4.6380 -6.8537 7.3548 39 1 7.2485 -7.3751 9.8990 40 1 3.2381 -7.5209 1.9116 41 1 2.2316 -7.8939 3.1818 42 1 3.0119 -2.2094 3.0315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126146579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:24 Heat of formation + Delta-G solvation = 80.207310 kcal Electronic energy + Delta-G solvation = -24917.519847 eV Core-core repulsion = 21219.182602 eV Total energy + Delta-G solvation = -3698.337246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.60562 -40.42311 -37.89633 -36.33782 -33.57161 -33.26646 -32.40770 -30.01590 -29.59904 -29.21546 -28.55338 -27.62592 -24.22345 -23.36313 -23.11256 -22.20209 -21.70121 -20.45948 -18.89876 -18.00584 -17.40840 -16.63190 -16.34673 -16.16506 -15.84362 -15.62762 -15.26580 -14.87905 -14.65847 -14.18032 -13.84132 -13.68909 -13.21450 -13.09729 -12.77682 -12.63082 -12.49380 -12.47547 -12.22226 -11.97160 -11.63106 -11.56280 -11.26420 -11.12378 -10.97242 -10.92035 -10.86512 -10.61310 -10.25178 -10.09606 -9.78835 -9.58408 -9.37164 -8.82508 -8.62532 -8.32440 -7.01036 -6.25998 -4.35565 0.71167 1.31097 1.55195 2.04961 2.35753 2.91930 3.03760 3.20508 3.21553 3.27663 3.33554 3.73994 4.02777 4.27309 4.37396 4.50407 4.61411 4.65355 4.71999 4.83524 5.06922 5.10256 5.14210 5.16677 5.29217 5.34214 5.37364 5.41178 5.54288 5.59895 5.72023 5.77443 5.87411 6.00444 6.13729 6.23416 6.40909 6.48265 6.52593 7.02028 7.13336 7.25609 7.45741 7.59816 7.84391 8.64720 8.84102 9.28585 10.84099 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.002116 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.348880 B =13232.232848 C =14084.286085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.308 6.308 5 C 0.130 3.870 6 C -0.203 4.203 7 C -0.083 4.083 8 C -0.130 4.130 9 C 0.038 3.962 10 C 0.225 3.775 11 N -0.260 5.260 12 N -0.274 5.274 13 C 0.153 3.847 14 S -0.060 6.060 15 C 0.085 3.915 16 C -0.531 4.531 17 H 0.067 0.933 18 C 0.072 3.928 19 N -0.879 5.879 20 Si 0.909 3.091 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.271 1.271 24 N -0.311 5.311 25 N -0.581 5.581 26 C -0.114 4.114 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.269 0.731 40 H 0.361 0.639 41 H 0.377 0.623 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 9.714 -22.687 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.222 6.222 5 C 0.085 3.915 6 C -0.223 4.223 7 C -0.101 4.101 8 C -0.151 4.151 9 C 0.035 3.965 10 C -0.041 4.041 11 N -0.102 5.102 12 N -0.119 5.119 13 C -0.221 4.221 14 S 0.169 5.831 15 C -0.063 4.063 16 C -0.571 4.571 17 H 0.085 0.915 18 C -0.134 4.134 19 N -0.515 5.515 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.195 1.195 24 N -0.095 5.095 25 N -0.212 5.212 26 C -0.135 4.135 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.178 0.822 41 H 0.196 0.804 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.467 10.439 -21.993 27.351 hybrid contribution 0.506 -1.370 0.239 1.480 sum -11.960 9.069 -21.755 26.430 Atomic orbital electron populations 1.22401 0.95092 1.03205 1.03183 1.22437 0.94313 0.93761 0.87443 1.21858 1.02298 0.93450 1.03052 1.86154 1.81207 1.16159 1.38695 1.18693 0.95957 0.82716 0.94151 1.21372 1.06560 0.95649 0.98714 1.20795 0.97944 0.93138 0.98260 1.21321 1.00180 1.00850 0.92699 1.17073 0.97966 0.91052 0.90427 1.22558 1.03475 0.79003 0.99099 1.74433 1.11848 1.23085 1.00870 1.74926 1.21048 0.94535 1.21378 1.28049 0.98543 1.04180 0.91326 1.85395 1.69003 0.96587 1.32164 1.21377 0.95913 1.00639 0.88325 1.20553 1.35598 0.92413 1.08495 0.91452 1.24943 0.94937 0.96709 0.96824 1.69973 1.34637 1.22438 1.24448 0.86317 0.78967 0.81978 0.79165 1.20232 1.20780 1.19537 1.45173 1.40006 1.05758 1.18589 1.59862 1.30750 1.19543 1.11081 1.20380 1.01898 0.91996 0.99187 0.91297 0.91071 0.91724 0.90872 0.91507 0.90578 0.91343 0.85261 0.85411 0.84462 0.92663 0.92611 0.92132 0.82158 0.80411 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.17 37.16 0.34 -0.80 16 2 C 0.08 0.58 2.85 -26.73 -0.08 0.50 16 3 C -0.15 -0.91 9.56 37.16 0.36 -0.55 16 4 O -0.31 -3.46 9.80 -19.45 -0.19 -3.65 16 5 C 0.13 1.54 6.59 -39.27 -0.26 1.28 16 6 C -0.20 -1.94 8.23 -39.35 -0.32 -2.27 16 7 C -0.08 -0.77 10.03 -39.67 -0.40 -1.17 16 8 C -0.13 -1.48 9.46 -39.17 -0.37 -1.85 16 9 C 0.04 0.54 5.87 -104.99 -0.62 -0.08 16 10 C 0.22 3.94 7.80 -153.75 -1.20 2.74 16 11 N -0.26 -5.46 11.96 32.60 0.39 -5.07 16 12 N -0.27 -6.28 11.59 30.71 0.36 -5.92 16 13 C 0.15 3.08 8.13 -88.18 -0.72 2.36 16 14 S -0.06 -1.22 21.89 -107.50 -2.35 -3.58 16 15 C 0.08 2.19 4.99 36.00 0.18 2.37 16 16 C -0.53 -14.35 9.13 -34.44 -0.31 -14.67 16 17 H 0.07 1.76 7.71 -52.49 -0.40 1.35 16 18 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 19 N -0.88 -25.45 13.29 55.43 0.74 -24.71 16 20 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 N -0.31 -5.11 3.83 -10.37 -0.04 -5.15 16 25 N -0.58 -6.56 8.21 60.35 0.50 -6.07 16 26 C -0.11 -1.59 9.64 -39.03 -0.38 -1.97 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.44 6.89 -51.93 -0.36 0.08 16 30 H 0.07 0.47 6.31 -51.93 -0.33 0.15 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.13 0.91 5.40 -52.48 -0.28 0.63 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.14 1.37 5.72 -52.48 -0.30 1.07 16 37 H 0.06 1.54 8.14 -51.92 -0.42 1.12 16 38 H 0.06 1.56 8.14 -51.92 -0.42 1.13 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.36 3.14 8.91 -181.36 -1.62 1.53 16 41 H 0.38 3.88 8.80 -181.37 -1.60 2.29 16 42 H 0.14 2.13 7.94 -52.48 -0.42 1.71 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -32.51 369.37 -11.75 -44.26 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.82 Total: 0.86 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.87 Total: -12.23 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 1.94 Total: -46.92 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.19 Total: -3.65 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.22 SS G_CDS: -2.35 Total: -3.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.51 -11.75 -44.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126146579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.467 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds