Wall clock time and date at job start Tue Mar 31 2020 18:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47016 * 2 1 4 4 O 1.42896 * 109.47056 * 120.00298 * 2 1 3 5 5 C 1.35908 * 117.00427 * 84.78822 * 4 2 1 6 6 C 1.38872 * 119.98045 * 354.62002 * 5 4 2 7 7 C 1.38236 * 120.23508 * 180.02562 * 6 5 4 8 8 C 1.38011 * 120.20759 * 0.02562 * 7 6 5 9 9 C 1.39576 * 119.96282 * 359.97438 * 8 7 6 10 10 C 1.47846 * 120.11507 * 180.02562 * 9 8 7 11 11 N 1.31265 * 126.46234 * 164.97507 * 10 9 8 12 12 N 1.28509 * 109.96021 * 179.97438 * 11 10 9 13 13 C 1.31452 * 110.07929 * 0.02562 * 12 11 10 14 14 S 1.76199 * 126.38332 * 179.97438 * 13 12 11 15 15 C 1.81010 * 99.99964 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.47161 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99474 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99876 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00268 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99603 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47292 * 90.00008 * 20 18 16 22 22 H 1.48496 * 109.46766 * 209.99730 * 20 18 16 23 23 H 1.48501 * 109.47093 * 329.99732 * 20 18 16 24 24 N 1.36560 * 107.23261 * 359.97438 * 13 12 11 25 25 N 1.36597 * 127.17221 * 179.97438 * 24 13 12 26 26 C 1.38441 * 119.98735 * 174.92362 * 5 4 2 27 27 H 1.08993 * 109.47470 * 299.99800 * 1 2 3 28 28 H 1.09001 * 109.47249 * 60.00380 * 1 2 3 29 29 H 1.09001 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47102 * 240.00243 * 2 1 3 31 31 H 1.08993 * 109.46819 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47199 * 299.99992 * 3 2 1 33 33 H 1.09007 * 109.46693 * 59.99899 * 3 2 1 34 34 H 1.08006 * 119.87904 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.89793 * 179.97438 * 7 6 5 36 36 H 1.08004 * 120.01716 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.46898 * 300.00428 * 15 14 13 38 38 H 1.09000 * 109.46678 * 60.00316 * 15 14 13 39 39 H 0.97002 * 120.00323 * 180.02562 * 19 18 16 40 40 H 1.00903 * 111.00344 * 270.03005 * 25 24 13 41 41 H 1.00897 * 111.00062 * 33.97912 * 25 24 13 42 42 H 1.08004 * 120.10370 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1083 -2.0273 1.0993 6 6 1.6522 -2.7024 -0.0253 7 6 1.7529 -4.0791 -0.0992 8 6 2.3069 -4.7919 0.9447 9 6 2.7680 -4.1219 2.0790 10 6 3.3626 -4.8821 3.1990 11 7 4.0752 -4.3891 4.1851 12 7 4.4324 -5.3317 4.9822 13 6 3.9700 -6.4850 4.5532 14 16 4.2051 -8.0549 5.3178 15 6 5.2005 -7.5625 6.7471 16 6 5.5321 -8.7795 7.5717 17 1 5.1784 -9.7526 7.2644 18 6 6.2869 -8.6507 8.7182 19 7 6.7172 -7.4657 9.0926 20 14 6.6984 -10.1595 9.7399 21 1 7.9759 -10.7472 9.2626 22 1 6.8356 -9.7691 11.1661 23 1 5.6110 -11.1614 9.6033 24 7 3.2734 -6.2395 3.4045 25 7 2.6241 -7.1518 2.6222 26 6 2.6610 -2.7329 2.1544 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6765 1.9563 0.8901 34 1 1.2173 -2.1498 -0.8451 35 1 1.3961 -4.5986 -0.9762 36 1 2.3844 -5.8674 0.8835 37 1 6.1230 -7.0945 6.4035 38 1 4.6380 -6.8537 7.3548 39 1 7.2485 -7.3751 9.8990 40 1 3.2381 -7.5209 1.9116 41 1 2.2316 -7.8939 3.1818 42 1 3.0119 -2.2094 3.0315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126146579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:23 Heat of formation + Delta-G solvation = 60.785514 kcal Electronic energy + Delta-G solvation = -24918.362039 eV Core-core repulsion = 21219.182602 eV Total energy + Delta-G solvation = -3699.179438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.05607 -41.24091 -38.75824 -37.59930 -35.35883 -34.18933 -33.52874 -31.07375 -30.87883 -30.77052 -30.15415 -28.12924 -25.61143 -24.86997 -24.49133 -23.28466 -22.75171 -21.41986 -20.04765 -19.12530 -18.58424 -18.47375 -17.75667 -17.19422 -16.76466 -16.72500 -16.36426 -16.31591 -15.97269 -15.10616 -14.91587 -14.61166 -14.55907 -14.48387 -14.40518 -13.76533 -13.42420 -13.20778 -13.16508 -12.93048 -12.86203 -12.75290 -12.69811 -12.53990 -12.34684 -12.20705 -11.91290 -11.76774 -11.67932 -11.56179 -11.38146 -11.28678 -10.79071 -10.74623 -9.85386 -9.23061 -8.63069 -8.34967 -6.53937 -0.37007 -0.02730 0.43439 0.71994 1.04335 1.32505 1.42310 1.43909 1.56584 1.60050 2.19485 2.35103 2.78024 2.89454 2.99747 3.51181 3.77406 3.86254 3.91839 4.01315 4.06676 4.16665 4.22868 4.28942 4.38656 4.59893 4.67773 4.72337 4.83299 4.83738 4.85195 4.89377 4.97630 4.99922 5.19092 5.29230 5.31845 5.39391 5.47549 5.48942 5.53533 5.70953 5.74409 6.25556 6.48579 6.55165 7.16282 7.34079 8.77039 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.027734 B = 0.002116 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.348880 B =13232.232848 C =14084.286085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.066 3.934 3 C -0.149 4.149 4 O -0.331 6.331 5 C 0.125 3.875 6 C -0.186 4.186 7 C -0.071 4.071 8 C -0.124 4.124 9 C 0.008 3.992 10 C 0.247 3.753 11 N -0.307 5.307 12 N -0.324 5.324 13 C 0.131 3.869 14 S 0.007 5.993 15 C 0.079 3.921 16 C -0.546 4.546 17 H 0.079 0.921 18 C 0.015 3.985 19 N -0.922 5.922 20 Si 0.985 3.015 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.256 1.256 24 N -0.302 5.302 25 N -0.564 5.564 26 C -0.137 4.137 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.272 0.728 40 H 0.380 0.620 41 H 0.386 0.614 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.599 8.182 -26.399 31.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 C -0.206 4.206 4 O -0.246 6.246 5 C 0.079 3.921 6 C -0.205 4.205 7 C -0.089 4.089 8 C -0.144 4.144 9 C 0.005 3.995 10 C -0.020 4.020 11 N -0.148 5.148 12 N -0.168 5.168 13 C -0.245 4.245 14 S 0.235 5.765 15 C -0.069 4.069 16 C -0.585 4.585 17 H 0.097 0.903 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.807 3.193 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.180 1.180 24 N -0.084 5.084 25 N -0.199 5.199 26 C -0.158 4.158 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.180 0.820 35 H 0.189 0.811 36 H 0.171 0.829 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.201 0.799 41 H 0.206 0.794 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.581 8.907 -25.742 30.896 hybrid contribution 1.006 -0.712 1.119 1.664 sum -13.575 8.195 -24.623 29.287 Atomic orbital electron populations 1.22394 0.93978 1.03268 1.03916 1.22801 0.95244 0.94138 0.86727 1.21907 1.01834 0.92924 1.03957 1.86149 1.81486 1.16027 1.40950 1.18743 0.95872 0.83216 0.94247 1.21776 1.04461 0.96106 0.98201 1.21273 0.96007 0.92976 0.98595 1.21558 0.99252 1.01710 0.91901 1.17181 1.00445 0.91046 0.90857 1.23176 1.01043 0.79362 0.98452 1.74331 1.14457 1.23524 1.02527 1.74799 1.22777 0.95967 1.23297 1.28006 0.99802 1.03585 0.93073 1.84653 1.67498 0.95582 1.28719 1.20945 0.95238 0.99815 0.90893 1.20945 1.35665 0.92931 1.08985 0.90301 1.26041 0.94514 1.00011 0.98182 1.70127 1.35528 1.25153 1.25150 0.85153 0.79230 0.77861 0.77040 1.19252 1.20508 1.18018 1.45159 1.39043 1.06327 1.17823 1.60000 1.30071 1.19505 1.10350 1.20293 1.03603 0.92300 0.99597 0.92471 0.88483 0.91937 0.89204 0.92313 0.87869 0.92232 0.82009 0.81100 0.82901 0.96124 0.96201 0.91948 0.79926 0.79361 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.17 71.98 0.66 -1.12 16 2 C 0.07 0.85 2.85 30.59 0.09 0.94 16 3 C -0.15 -1.59 9.56 71.98 0.69 -0.90 16 4 O -0.33 -7.31 9.80 -92.52 -0.91 -8.22 16 5 C 0.12 2.83 6.59 22.47 0.15 2.98 16 6 C -0.19 -2.87 8.23 22.42 0.18 -2.68 16 7 C -0.07 -0.99 10.03 22.22 0.22 -0.77 16 8 C -0.12 -2.46 9.46 22.54 0.21 -2.25 16 9 C 0.01 0.22 5.87 -20.10 -0.12 0.10 16 10 C 0.25 8.94 7.80 136.21 1.06 10.00 16 11 N -0.31 -13.84 11.96 -50.79 -0.61 -14.44 16 12 N -0.32 -15.93 11.59 -56.75 -0.66 -16.59 16 13 C 0.13 5.47 8.13 179.49 1.46 6.93 16 14 S 0.01 0.27 21.89 -56.49 -1.24 -0.96 16 15 C 0.08 4.34 4.99 71.23 0.36 4.70 16 16 C -0.55 -30.26 9.13 25.60 0.23 -30.03 16 17 H 0.08 4.09 7.71 -2.91 -0.02 4.06 16 18 C 0.01 0.81 5.46 84.66 0.46 1.27 16 19 N -0.92 -55.69 13.29 21.45 0.28 -55.40 16 20 Si 0.98 42.68 29.54 68.60 2.03 44.70 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 24 N -0.30 -9.89 3.83 -186.72 -0.72 -10.60 16 25 N -0.56 -11.51 8.21 37.02 0.30 -11.21 16 26 C -0.14 -3.97 9.64 22.63 0.22 -3.75 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.65 6.89 -2.39 -0.02 0.64 16 30 H 0.09 0.84 6.31 -2.39 -0.02 0.83 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.16 1.44 5.40 -2.91 -0.02 1.42 16 35 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 36 H 0.15 2.46 5.72 -2.91 -0.02 2.45 16 37 H 0.02 1.23 8.14 -2.40 -0.02 1.21 16 38 H 0.02 1.19 8.14 -2.40 -0.02 1.17 16 39 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.38 5.47 8.91 -210.55 -1.88 3.59 16 41 H 0.39 6.99 8.80 -210.56 -1.85 5.14 16 42 H 0.12 3.87 7.94 -2.91 -0.02 3.85 16 Total: -1.00 -77.46 369.37 1.72 -75.74 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -2.65 Total: 11.56 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 5.88 Total: -14.57 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -1.39 Total: -108.24 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.91 Total: -8.22 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -1.24 Total: -0.96 kcal Total: -77.46 1.72 -75.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126146579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.521 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds