Wall clock time and date at job start Tue Mar 31 2020 17:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47330 * 2 1 4 4 H 1.09000 * 109.46748 * 54.99647 * 3 2 1 5 5 C 1.50700 * 109.46951 * 174.99587 * 3 2 1 6 6 H 1.08001 * 119.99895 * 119.99910 * 5 3 2 7 7 C 1.37877 * 120.00218 * 299.99850 * 5 3 2 8 8 N 1.31508 * 119.99963 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99850 * 0.02562 * 7 5 3 10 10 H 1.48505 * 109.47000 * 90.00139 * 9 7 5 11 11 H 1.48497 * 109.46866 * 209.99517 * 9 7 5 12 12 H 1.48496 * 109.47387 * 329.99972 * 9 7 5 13 13 N 1.46499 * 109.46871 * 294.99993 * 3 2 1 14 14 C 1.34776 * 120.00106 * 85.00068 * 13 3 2 15 15 O 1.21587 * 119.99968 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99902 * 179.97438 * 14 13 3 17 17 C 1.40070 * 120.00242 * 185.63364 * 16 14 13 18 18 C 1.38712 * 120.04106 * 24.78926 * 17 16 14 19 19 C 1.38716 * 119.88960 * 179.72326 * 18 17 16 20 20 N 1.40308 * 120.01107 * 180.30224 * 19 18 17 21 21 C 1.35053 * 127.38864 * 179.70527 * 20 19 18 22 22 N 1.30752 * 107.27388 * 179.87341 * 21 20 19 23 23 N 1.28418 * 110.64439 * 0.40382 * 22 21 20 24 24 N 1.28949 * 110.20284 * 359.74808 * 23 22 21 25 25 C 1.38846 * 119.97931 * 0.27294 * 19 18 17 26 26 C 1.38173 * 120.09497 * 0.02757 * 25 19 18 27 27 C 1.38337 * 120.10332 * 359.97438 * 26 25 19 28 28 F 1.35103 * 119.98732 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.46956 * 300.00755 * 1 2 3 30 30 H 1.08997 * 109.46980 * 59.99633 * 1 2 3 31 31 H 1.08992 * 109.47538 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47297 * 239.99530 * 2 1 3 33 33 H 1.09007 * 109.46678 * 119.99646 * 2 1 3 34 34 H 0.97005 * 120.00470 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99220 * 264.99688 * 13 3 2 36 36 H 0.97007 * 119.99793 * 5.64154 * 16 14 13 37 37 H 1.08000 * 120.05246 * 359.97438 * 18 17 16 38 38 H 1.07995 * 126.36109 * 359.97438 * 21 20 19 39 39 H 1.08004 * 119.95811 * 180.02562 * 25 19 18 40 40 H 1.07993 * 119.95096 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 5.4539 0.8794 1.3360 9 14 3.0963 0.1089 2.5702 10 1 2.8754 -1.3273 2.2635 11 1 3.7935 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3411 2.6327 -0.4318 16 7 0.0789 3.2674 -2.5185 17 6 -1.1368 3.9583 -2.6003 18 6 -1.7232 4.4702 -1.4522 19 6 -2.9243 5.1589 -1.5376 20 7 -3.5165 5.6833 -0.3788 21 6 -4.6712 6.3781 -0.2904 22 7 -4.8520 6.6719 0.9708 23 7 -3.8860 6.2174 1.6845 24 7 -3.0319 5.6033 0.9388 25 6 -3.5400 5.3296 -2.7703 26 6 -2.9584 4.8140 -3.9127 27 6 -1.7606 4.1265 -3.8317 28 9 -1.1942 3.6229 -4.9501 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8771 0.4810 2.1126 35 1 2.2721 2.1230 -1.9977 36 1 0.6644 3.2228 -3.2907 37 1 -1.2433 4.3363 -0.4940 38 1 -5.3248 6.6406 -1.1091 39 1 -4.4750 5.8663 -2.8365 40 1 -3.4395 4.9478 -4.8702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157362201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:31 Heat of formation + Delta-G solvation = 93.647859 kcal Electronic energy + Delta-G solvation = -28410.663582 eV Core-core repulsion = 24178.988738 eV Total energy + Delta-G solvation = -4231.674845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.28167 -43.41639 -40.72804 -39.17746 -36.30413 -35.23959 -34.29028 -32.66167 -32.47534 -31.69753 -30.50158 -29.49302 -27.48713 -25.30686 -24.52350 -22.95308 -22.54742 -22.32816 -21.15823 -20.03053 -19.20387 -18.66253 -17.92871 -17.17438 -16.85144 -16.54222 -16.31068 -16.17303 -15.88264 -15.49677 -15.03935 -14.47664 -14.25535 -14.00129 -13.82594 -13.60233 -13.57511 -13.21897 -13.13918 -12.64950 -12.51586 -12.14224 -12.00898 -11.90863 -11.68047 -11.26140 -11.17137 -10.97930 -10.74313 -10.70625 -10.66442 -9.98803 -9.86086 -9.49288 -9.31103 -9.02611 -8.84250 -8.48515 -8.15636 -6.27316 -4.31043 -0.04307 0.71678 1.21187 1.47263 2.03283 2.59995 2.97364 3.20108 3.33366 3.37857 3.49601 3.67350 3.76900 3.87816 4.26389 4.28795 4.38778 4.46813 4.60556 4.85434 4.91446 5.06335 5.11953 5.28855 5.43987 5.65375 5.76557 5.88822 5.93356 5.96446 6.08544 6.19431 6.49719 6.54952 6.62808 6.70348 6.80810 6.95296 7.14971 7.29074 7.40469 8.11756 8.16767 8.41199 8.68188 8.81682 9.32372 10.84472 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003549 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.346190 B = 7886.836662 C = 9492.027395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.259 3.741 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.081 0.919 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.703 5.703 14 C 0.693 3.307 15 O -0.568 6.568 16 N -0.686 5.686 17 C 0.183 3.817 18 C -0.095 4.095 19 C 0.141 3.859 20 N -0.323 5.323 21 C 0.222 3.778 22 N -0.332 5.332 23 N -0.038 5.038 24 N -0.057 5.057 25 C -0.126 4.126 26 C -0.104 4.104 27 C 0.065 3.935 28 F -0.130 7.130 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.269 0.731 35 H 0.395 0.605 36 H 0.412 0.588 37 H 0.182 0.818 38 H 0.239 0.761 39 H 0.143 0.857 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.272 8.708 -14.183 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.155 3.845 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.099 0.901 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.183 1.183 13 N -0.354 5.354 14 C 0.394 3.606 15 O -0.445 6.445 16 N -0.332 5.332 17 C 0.082 3.918 18 C -0.118 4.118 19 C 0.048 3.952 20 N -0.114 5.114 21 C -0.075 4.075 22 N -0.181 5.181 23 N -0.033 5.033 24 N -0.042 5.042 25 C -0.148 4.148 26 C -0.124 4.124 27 C 0.041 3.959 28 F -0.109 7.109 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.249 0.751 37 H 0.199 0.801 38 H 0.255 0.745 39 H 0.161 0.839 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.314 8.553 -11.707 23.358 hybrid contribution 0.233 -0.793 -1.318 1.556 sum -18.081 7.759 -13.025 23.596 Atomic orbital electron populations 1.21859 0.96858 0.99066 1.02234 1.22322 0.94416 0.99904 1.01266 1.19157 0.95671 0.88285 0.81373 0.92915 1.20991 0.88361 1.40265 1.08044 0.90134 1.24803 0.94880 0.95026 0.97609 1.69853 1.08700 1.44186 1.29857 0.86921 0.81048 0.79966 0.80956 1.20186 1.22019 1.18308 1.45506 1.12830 1.58000 1.19019 1.16064 0.83768 0.78751 0.82018 1.90900 1.51493 1.64101 1.38046 1.42801 1.19711 1.54874 1.15838 1.17248 0.87835 0.94703 0.91988 1.21271 0.94176 0.95171 1.01201 1.17340 0.95223 1.00213 0.82449 1.49053 1.17014 1.37579 1.07727 1.27410 0.88694 0.92930 0.98490 1.74480 1.20266 1.22877 1.00466 1.78138 0.96989 1.05498 1.22693 1.82920 1.18790 1.19043 0.83439 1.20540 1.01433 1.03600 0.89268 1.20694 0.93856 0.98207 0.99657 1.17440 0.94235 1.02625 0.81589 1.91515 1.84369 1.85470 1.49550 0.92713 0.93153 0.94970 0.92252 0.92552 0.92148 0.77175 0.75144 0.80102 0.74472 0.83913 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.51 37.16 0.32 -2.48 16 2 C -0.14 -3.00 5.11 -26.73 -0.14 -3.13 16 3 C 0.26 5.81 1.83 -69.08 -0.13 5.69 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.98 16 5 C -0.54 -13.99 9.31 -34.44 -0.32 -14.31 16 6 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -25.81 13.96 55.43 0.77 -25.04 16 9 Si 0.88 21.34 24.41 -169.99 -4.15 17.19 16 10 H -0.28 -6.45 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.22 6.53 56.52 0.37 -5.85 16 13 N -0.70 -12.75 5.03 -59.81 -0.30 -13.05 16 14 C 0.69 11.85 6.93 -86.92 -0.60 11.25 16 15 O -0.57 -11.37 10.64 5.29 0.06 -11.32 16 16 N -0.69 -8.81 5.32 -14.18 -0.08 -8.89 16 17 C 0.18 2.19 6.44 -83.61 -0.54 1.65 16 18 C -0.10 -1.26 8.37 -39.23 -0.33 -1.59 16 19 C 0.14 1.46 6.70 -83.57 -0.56 0.90 16 20 N -0.32 -3.71 3.85 -11.75 -0.05 -3.75 16 21 C 0.22 1.89 12.16 -90.16 -1.10 0.80 16 22 N -0.33 -4.13 12.15 29.64 0.36 -3.77 16 23 N -0.04 -0.58 13.39 60.35 0.81 0.22 16 24 N -0.06 -0.88 13.33 60.35 0.80 -0.07 16 25 C -0.13 -0.79 9.48 -39.38 -0.37 -1.17 16 26 C -0.10 -0.67 10.01 -39.57 -0.40 -1.07 16 27 C 0.06 0.60 7.30 -39.24 -0.29 0.32 16 28 F -0.13 -1.24 16.81 2.25 0.04 -1.20 16 29 H 0.05 1.14 7.84 -51.93 -0.41 0.74 16 30 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.28 3.21 -51.92 -0.17 1.11 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.39 6.18 8.56 -40.82 -0.35 5.83 16 36 H 0.41 4.15 8.47 -40.82 -0.35 3.80 16 37 H 0.18 3.04 5.49 -52.49 -0.29 2.75 16 38 H 0.24 0.50 7.19 -52.49 -0.38 0.12 16 39 H 0.14 0.32 6.87 -52.48 -0.36 -0.04 16 40 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -33.50 337.52 -4.99 -38.49 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.80 Total: 7.12 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -4.55 Total: -1.02 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 2.33 Total: -54.35 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.06 Total: -11.32 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.15 Total: 17.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.50 -4.99 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157362201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.139 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds