Wall clock time and date at job start Tue Mar 31 2020 17:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47330 * 2 1 4 4 H 1.09000 * 109.46748 * 54.99647 * 3 2 1 5 5 C 1.50700 * 109.46951 * 174.99587 * 3 2 1 6 6 H 1.08001 * 119.99895 * 119.99910 * 5 3 2 7 7 C 1.37877 * 120.00218 * 299.99850 * 5 3 2 8 8 N 1.31508 * 119.99963 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99850 * 0.02562 * 7 5 3 10 10 H 1.48505 * 109.47000 * 90.00139 * 9 7 5 11 11 H 1.48497 * 109.46866 * 209.99517 * 9 7 5 12 12 H 1.48496 * 109.47387 * 329.99972 * 9 7 5 13 13 N 1.46499 * 109.46871 * 294.99993 * 3 2 1 14 14 C 1.34776 * 120.00106 * 85.00068 * 13 3 2 15 15 O 1.21587 * 119.99968 * 0.02562 * 14 13 3 16 16 N 1.34779 * 119.99902 * 179.97438 * 14 13 3 17 17 C 1.40070 * 120.00242 * 185.63364 * 16 14 13 18 18 C 1.38712 * 120.04106 * 24.78926 * 17 16 14 19 19 C 1.38716 * 119.88960 * 179.72326 * 18 17 16 20 20 N 1.40308 * 120.01107 * 180.30224 * 19 18 17 21 21 C 1.35053 * 127.38864 * 179.70527 * 20 19 18 22 22 N 1.30752 * 107.27388 * 179.87341 * 21 20 19 23 23 N 1.28418 * 110.64439 * 0.40382 * 22 21 20 24 24 N 1.28949 * 110.20284 * 359.74808 * 23 22 21 25 25 C 1.38846 * 119.97931 * 0.27294 * 19 18 17 26 26 C 1.38173 * 120.09497 * 0.02757 * 25 19 18 27 27 C 1.38337 * 120.10332 * 359.97438 * 26 25 19 28 28 F 1.35103 * 119.98732 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.46956 * 300.00755 * 1 2 3 30 30 H 1.08997 * 109.46980 * 59.99633 * 1 2 3 31 31 H 1.08992 * 109.47538 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47297 * 239.99530 * 2 1 3 33 33 H 1.09007 * 109.46678 * 119.99646 * 2 1 3 34 34 H 0.97005 * 120.00470 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99220 * 264.99688 * 13 3 2 36 36 H 0.97007 * 119.99793 * 5.64154 * 16 14 13 37 37 H 1.08000 * 120.05246 * 359.97438 * 18 17 16 38 38 H 1.07995 * 126.36109 * 359.97438 * 21 20 19 39 39 H 1.08004 * 119.95811 * 180.02562 * 25 19 18 40 40 H 1.07993 * 119.95096 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6522 7 6 4.1433 0.8783 1.2281 8 7 5.4539 0.8794 1.3360 9 14 3.0963 0.1089 2.5702 10 1 2.8754 -1.3273 2.2635 11 1 3.7935 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6525 2.0974 -1.2518 14 6 0.4353 2.6644 -1.3670 15 8 -0.3411 2.6327 -0.4318 16 7 0.0789 3.2674 -2.5185 17 6 -1.1368 3.9583 -2.6003 18 6 -1.7232 4.4702 -1.4522 19 6 -2.9243 5.1589 -1.5376 20 7 -3.5165 5.6833 -0.3788 21 6 -4.6712 6.3781 -0.2904 22 7 -4.8520 6.6719 0.9708 23 7 -3.8860 6.2174 1.6845 24 7 -3.0319 5.6033 0.9388 25 6 -3.5400 5.3296 -2.7703 26 6 -2.9584 4.8140 -3.9127 27 6 -1.7606 4.1265 -3.8317 28 9 -1.1942 3.6229 -4.9501 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.8771 0.4810 2.1126 35 1 2.2721 2.1230 -1.9977 36 1 0.6644 3.2228 -3.2907 37 1 -1.2433 4.3363 -0.4940 38 1 -5.3248 6.6406 -1.1091 39 1 -4.4750 5.8663 -2.8365 40 1 -3.4395 4.9478 -4.8702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157362201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:30 Heat of formation + Delta-G solvation = 68.199783 kcal Electronic energy + Delta-G solvation = -28411.767093 eV Core-core repulsion = 24178.988738 eV Total energy + Delta-G solvation = -4232.778356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.00999 -44.29680 -41.87363 -40.16983 -37.69134 -36.45616 -35.31314 -34.47407 -33.48979 -33.23182 -31.37314 -30.44091 -29.25331 -26.15852 -25.44348 -24.61082 -23.62686 -23.24984 -22.38201 -21.59772 -20.19402 -19.93783 -18.74442 -18.37303 -17.98264 -17.73959 -17.48468 -17.11980 -16.76747 -16.74011 -16.42565 -15.93422 -15.24047 -15.11196 -15.00922 -14.77643 -14.55520 -14.45869 -14.19173 -13.99732 -13.81520 -13.71473 -13.37215 -13.02664 -12.90643 -12.78735 -12.61326 -12.43246 -12.15081 -11.90054 -11.66912 -11.60632 -11.37226 -11.28805 -11.09426 -10.88689 -9.96016 -9.80632 -9.19509 -8.41196 -6.46756 -0.81011 -0.00745 0.40351 0.72071 1.18437 1.24516 1.34081 1.42899 1.47616 1.96838 2.23234 2.45253 2.91256 2.95087 3.01524 3.23645 3.33787 3.65815 3.71654 3.86768 4.10753 4.19869 4.21339 4.28061 4.30960 4.39621 4.55088 4.77728 4.84481 4.89325 4.97054 5.06393 5.08406 5.12906 5.17410 5.35598 5.36204 5.47985 5.57343 5.72965 5.81156 6.19350 6.55652 6.98480 7.17969 7.26371 7.46955 8.73834 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003549 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.346190 B = 7886.836662 C = 9492.027395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.137 4.137 3 C 0.269 3.731 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.932 3.068 10 H -0.258 1.258 11 H -0.294 1.294 12 H -0.263 1.263 13 N -0.706 5.706 14 C 0.696 3.304 15 O -0.599 6.599 16 N -0.674 5.674 17 C 0.152 3.848 18 C -0.124 4.124 19 C 0.126 3.874 20 N -0.325 5.325 21 C 0.249 3.751 22 N -0.359 5.359 23 N -0.066 5.066 24 N -0.111 5.111 25 C -0.091 4.091 26 C -0.084 4.084 27 C 0.071 3.929 28 F -0.130 7.130 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.271 0.729 35 H 0.406 0.594 36 H 0.425 0.575 37 H 0.136 0.864 38 H 0.308 0.692 39 H 0.202 0.798 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.079 9.377 -17.661 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.176 4.176 3 C 0.163 3.837 4 H 0.041 0.959 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.760 3.240 10 H -0.183 1.183 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.358 5.358 14 C 0.397 3.603 15 O -0.478 6.478 16 N -0.322 5.322 17 C 0.054 3.946 18 C -0.148 4.148 19 C 0.034 3.966 20 N -0.115 5.115 21 C -0.046 4.046 22 N -0.209 5.209 23 N -0.061 5.061 24 N -0.096 5.096 25 C -0.112 4.112 26 C -0.104 4.104 27 C 0.048 3.952 28 F -0.109 7.109 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.241 0.759 36 H 0.263 0.737 37 H 0.153 0.847 38 H 0.323 0.677 39 H 0.219 0.781 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -22.141 9.242 -15.253 28.431 hybrid contribution 1.300 -0.848 -0.434 1.611 sum -20.842 8.394 -15.687 27.403 Atomic orbital electron populations 1.21721 0.95334 1.00354 1.01386 1.22225 0.95680 0.98499 1.01190 1.18698 0.93159 0.89353 0.82441 0.95916 1.21243 0.90150 1.38709 1.07061 0.92274 1.25473 0.95661 0.95844 0.99676 1.69956 1.10181 1.46005 1.30861 0.86100 0.79302 0.80085 0.78535 1.18334 1.22137 1.18748 1.45150 1.13918 1.58638 1.18079 1.16059 0.82920 0.78534 0.82799 1.90903 1.52262 1.65050 1.39604 1.42442 1.20692 1.54418 1.14684 1.17400 0.87896 0.96242 0.93089 1.20943 0.96118 0.97829 0.99864 1.17636 0.94849 1.00637 0.83519 1.49110 1.17740 1.37836 1.06843 1.28676 0.87474 0.89743 0.98708 1.74378 1.20252 1.23925 1.02301 1.78119 0.97846 1.06219 1.23907 1.82888 1.20268 1.20823 0.85668 1.21182 1.02226 1.01156 0.86680 1.21270 0.91968 0.95567 1.01573 1.17634 0.94870 1.02396 0.80296 1.91526 1.84603 1.85535 1.49222 0.94707 0.92918 0.92438 0.91023 0.93759 0.92010 0.75852 0.73686 0.84671 0.67688 0.78118 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.51 71.98 0.61 -4.46 16 2 C -0.14 -5.86 5.11 30.60 0.16 -5.70 16 3 C 0.27 12.47 1.83 44.25 0.08 12.55 16 4 H 0.02 1.21 6.63 -2.39 -0.02 1.19 16 5 C -0.53 -28.68 9.31 25.60 0.24 -28.44 16 6 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 7 C 0.03 1.89 5.45 84.66 0.46 2.35 16 8 N -0.93 -55.68 13.96 21.45 0.30 -55.38 16 9 Si 0.93 45.08 24.41 68.60 1.67 46.76 16 10 H -0.26 -11.66 6.83 99.48 0.68 -10.98 16 11 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.26 -12.78 6.53 99.48 0.65 -12.13 16 13 N -0.71 -26.45 5.03 -461.41 -2.32 -28.76 16 14 C 0.70 24.69 6.93 179.05 1.24 25.94 16 15 O -0.60 -25.34 10.64 -3.99 -0.04 -25.38 16 16 N -0.67 -17.49 5.32 -317.04 -1.69 -19.18 16 17 C 0.15 3.54 6.44 38.14 0.25 3.78 16 18 C -0.12 -3.33 8.37 22.50 0.19 -3.14 16 19 C 0.13 2.32 6.70 38.04 0.25 2.57 16 20 N -0.33 -6.94 3.85 -191.09 -0.74 -7.68 16 21 C 0.25 3.34 12.16 180.19 2.19 5.53 16 22 N -0.36 -8.48 12.15 -60.14 -0.73 -9.21 16 23 N -0.07 -2.08 13.39 37.02 0.50 -1.58 16 24 N -0.11 -3.58 13.33 37.02 0.49 -3.09 16 25 C -0.09 -0.59 9.48 22.40 0.21 -0.37 16 26 C -0.08 -0.56 10.01 22.28 0.22 -0.34 16 27 C 0.07 1.09 7.30 22.49 0.16 1.25 16 28 F -0.13 -2.04 16.81 44.97 0.76 -1.28 16 29 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 30 H 0.05 2.00 5.64 -2.39 -0.01 1.99 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.04 1.99 3.21 -2.38 -0.01 1.99 16 34 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 35 H 0.41 13.08 8.56 -92.71 -0.79 12.28 16 36 H 0.42 8.41 8.47 -92.70 -0.79 7.63 16 37 H 0.14 4.98 5.49 -2.91 -0.02 4.96 16 38 H 0.31 -1.04 7.19 -2.91 -0.02 -1.06 16 39 H 0.20 -1.02 6.87 -2.91 -0.02 -1.04 16 40 H 0.20 -0.34 8.06 -2.91 -0.02 -0.36 16 Total: -1.00 -82.24 337.52 3.96 -78.27 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -0.51 Total: 15.00 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.27 Total: 11.52 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -4.18 Total: -124.88 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.04 Total: -25.38 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.76 Total: -1.28 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.76 kcal Total: -82.24 3.96 -78.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157362201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.474 kcal (2) G-P(sol) polarization free energy of solvation -82.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds