Wall clock time and date at job start Tue Mar 31 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 H 1.08995 * 109.47479 * 305.00683 * 3 2 1 5 5 C 1.50701 * 109.47438 * 185.00378 * 3 2 1 6 6 H 1.07999 * 119.99963 * 240.00617 * 5 3 2 7 7 C 1.37872 * 120.00040 * 60.00336 * 5 3 2 8 8 N 1.31515 * 119.99891 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47186 * 59.99992 * 9 7 5 11 11 H 1.48501 * 109.47008 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46893 * 299.99629 * 9 7 5 13 13 N 1.46502 * 109.46883 * 65.00438 * 3 2 1 14 14 C 1.34778 * 120.00358 * 275.00035 * 13 3 2 15 15 O 1.21598 * 119.99421 * 0.02562 * 14 13 3 16 16 N 1.34768 * 120.00354 * 179.97438 * 14 13 3 17 17 C 1.40077 * 120.00034 * 174.36789 * 16 14 13 18 18 C 1.38699 * 120.04606 * 335.21194 * 17 16 14 19 19 C 1.38724 * 119.89521 * 179.77168 * 18 17 16 20 20 N 1.40304 * 120.00946 * 180.21172 * 19 18 17 21 21 C 1.35054 * 127.38562 * 184.95388 * 20 19 18 22 22 N 1.30742 * 107.27565 * 179.84385 * 21 20 19 23 23 N 1.28425 * 110.64720 * 0.44333 * 22 21 20 24 24 N 1.28945 * 110.19457 * 359.72242 * 23 22 21 25 25 C 1.38847 * 119.97666 * 0.46095 * 19 18 17 26 26 C 1.38172 * 120.09066 * 359.79094 * 25 19 18 27 27 C 1.38333 * 120.10894 * 0.02562 * 26 25 19 28 28 F 1.35109 * 119.99094 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47551 * 59.99405 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99052 * 1 2 3 32 32 H 1.09000 * 109.47635 * 120.00427 * 2 1 3 33 33 H 1.09005 * 109.46714 * 240.00490 * 2 1 3 34 34 H 0.97001 * 120.00325 * 180.02562 * 8 7 5 35 35 H 0.97006 * 120.00069 * 95.00132 * 13 3 2 36 36 H 0.96998 * 120.00308 * 354.36079 * 16 14 13 37 37 H 1.08001 * 120.05245 * 359.97438 * 18 17 16 38 38 H 1.08002 * 126.36002 * 0.02562 * 21 20 19 39 39 H 1.07993 * 119.95414 * 179.77478 * 25 19 18 40 40 H 1.08003 * 119.94701 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 3.4060 0.3377 -2.1734 9 14 6.0049 0.8802 -1.3814 10 1 6.5967 0.1454 -0.2346 11 1 6.3977 0.2171 -2.6507 12 1 6.5003 2.2801 -1.3810 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3416 2.6317 0.4323 16 7 0.0785 3.2663 2.5190 17 6 -1.1373 3.9571 2.6010 18 6 -1.7233 4.4700 1.4532 19 6 -2.9298 5.1495 1.5374 20 7 -3.5270 5.6654 0.3773 21 6 -4.6412 6.4243 0.2966 22 7 -4.8414 6.6869 -0.9684 23 7 -3.9348 6.1381 -1.6938 24 7 -3.0974 5.4980 -0.9510 25 6 -3.5435 5.3234 2.7707 26 6 -2.9564 4.8168 3.9142 27 6 -1.7553 4.1353 3.8340 28 9 -1.1830 3.6413 4.9538 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.8291 -0.0607 -2.9502 35 1 2.2721 2.1230 1.9979 36 1 0.6636 3.2211 3.2913 37 1 -1.2428 4.3376 0.4951 38 1 -5.2516 6.7555 1.1238 39 1 -4.4809 5.8557 2.8362 40 1 -3.4356 4.9538 4.8724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157362346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:34 Heat of formation + Delta-G solvation = 85.428062 kcal Electronic energy + Delta-G solvation = -28301.104311 eV Core-core repulsion = 24069.073029 eV Total energy + Delta-G solvation = -4232.031282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.21957 -43.35258 -40.59413 -39.03815 -36.08390 -35.06999 -34.17458 -32.63730 -32.42963 -31.16697 -30.37825 -29.37122 -26.96341 -25.23915 -24.43700 -23.18466 -22.48547 -22.23481 -20.86120 -19.69371 -19.10868 -18.49766 -17.84828 -17.11946 -16.77779 -16.36820 -16.20732 -15.91098 -15.81922 -15.15716 -14.97634 -14.31915 -14.18164 -13.98168 -13.74943 -13.49990 -13.46170 -13.07122 -12.72874 -12.52740 -12.44612 -11.95375 -11.72271 -11.54684 -11.31182 -11.19786 -11.04311 -10.89446 -10.67360 -10.58331 -10.39022 -10.26240 -9.72355 -9.57222 -9.13567 -8.94269 -8.57870 -8.36328 -7.93922 -6.18283 -4.28627 0.02669 0.79334 1.27608 1.54199 2.09408 2.73288 3.06016 3.22023 3.28222 3.28941 3.64902 3.74207 3.83934 3.94734 4.26106 4.35299 4.49850 4.55402 4.75690 4.92479 4.98046 5.13482 5.18450 5.37764 5.50385 5.73155 5.83503 6.01094 6.27536 6.33969 6.40008 6.57330 6.64284 6.79555 6.99776 7.20900 7.24097 7.32727 7.56766 7.74089 7.83848 8.10176 8.23208 8.55939 8.70479 9.01069 9.38711 10.86950 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003239 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.600165 B = 8641.367157 C =10046.072048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.710 5.710 14 C 0.690 3.310 15 O -0.565 6.565 16 N -0.688 5.688 17 C 0.185 3.815 18 C -0.095 4.095 19 C 0.141 3.859 20 N -0.323 5.323 21 C 0.221 3.779 22 N -0.333 5.333 23 N -0.039 5.039 24 N -0.054 5.054 25 C -0.128 4.128 26 C -0.104 4.104 27 C 0.062 3.938 28 F -0.131 7.131 29 H 0.022 0.978 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.101 0.899 34 H 0.266 0.734 35 H 0.388 0.612 36 H 0.410 0.590 37 H 0.182 0.818 38 H 0.239 0.761 39 H 0.143 0.857 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 9.772 15.322 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.361 5.361 14 C 0.391 3.609 15 O -0.442 6.442 16 N -0.334 5.334 17 C 0.084 3.916 18 C -0.118 4.118 19 C 0.048 3.952 20 N -0.114 5.114 21 C -0.076 4.076 22 N -0.182 5.182 23 N -0.034 5.034 24 N -0.040 5.040 25 C -0.150 4.150 26 C -0.124 4.124 27 C 0.038 3.962 28 F -0.110 7.110 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.220 0.780 36 H 0.246 0.754 37 H 0.199 0.801 38 H 0.255 0.745 39 H 0.160 0.840 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.266 9.485 12.739 20.694 hybrid contribution 1.587 -0.289 1.962 2.540 sum -11.678 9.196 14.700 20.906 Atomic orbital electron populations 1.21823 0.98257 0.98074 1.01208 1.21969 0.92673 0.99742 1.02404 1.18810 0.94225 0.88971 0.79566 0.92917 1.21143 0.90438 1.39600 1.06504 0.92092 1.24867 0.98693 0.94678 0.95286 1.69876 1.35322 1.37178 1.09277 0.86491 0.84656 0.78349 0.77509 1.20162 1.21057 1.20160 1.45917 1.12574 1.58031 1.19544 1.16130 0.83997 0.78871 0.81923 1.90909 1.51376 1.63951 1.37987 1.42896 1.19623 1.54982 1.15900 1.17265 0.87968 0.94444 0.91919 1.21285 0.94081 0.95223 1.01242 1.17344 0.94955 1.00521 0.82387 1.49059 1.19525 1.35516 1.07268 1.27398 0.89012 0.92595 0.98621 1.74471 1.21065 1.22519 1.00107 1.78142 0.98078 1.04320 1.22840 1.82947 1.19001 1.19071 0.82934 1.20524 1.01393 1.03812 0.89284 1.20677 0.93749 0.98383 0.99613 1.17437 0.94251 1.02962 0.81503 1.91509 1.84147 1.85880 1.49472 0.95860 0.92985 0.94506 0.95007 0.88083 0.92352 0.77968 0.75389 0.80093 0.74515 0.83973 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.29 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.08 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -13.59 5.03 -59.81 -0.30 -13.90 16 14 C 0.69 12.61 6.94 -86.92 -0.60 12.01 16 15 O -0.57 -12.16 10.64 5.28 0.06 -12.11 16 16 N -0.69 -9.45 5.32 -14.18 -0.08 -9.52 16 17 C 0.18 2.36 6.44 -83.61 -0.54 1.83 16 18 C -0.10 -1.34 8.37 -39.23 -0.33 -1.67 16 19 C 0.14 1.56 6.70 -83.57 -0.56 1.00 16 20 N -0.32 -3.92 3.85 -11.75 -0.05 -3.96 16 21 C 0.22 2.00 12.15 -90.16 -1.10 0.91 16 22 N -0.33 -4.31 12.15 29.64 0.36 -3.95 16 23 N -0.04 -0.62 13.39 60.35 0.81 0.19 16 24 N -0.05 -0.88 13.34 60.35 0.81 -0.08 16 25 C -0.13 -0.88 9.49 -39.38 -0.37 -1.26 16 26 C -0.10 -0.73 10.01 -39.57 -0.40 -1.13 16 27 C 0.06 0.62 7.31 -39.24 -0.29 0.33 16 28 F -0.13 -1.32 16.80 2.25 0.04 -1.29 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 31 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.39 6.31 8.56 -40.82 -0.35 5.96 16 36 H 0.41 4.44 8.46 -40.82 -0.35 4.09 16 37 H 0.18 3.22 5.51 -52.49 -0.29 2.93 16 38 H 0.24 0.61 7.21 -52.49 -0.38 0.24 16 39 H 0.14 0.40 6.89 -52.49 -0.36 0.04 16 40 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -32.27 344.33 -6.06 -38.32 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.94 Total: 8.82 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -4.56 Total: 0.61 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 2.18 Total: -54.67 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.06 Total: -12.11 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.27 -6.06 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157362346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.750 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds