Wall clock time and date at job start Tue Mar 31 2020 17:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47178 * 2 1 4 4 H 1.08995 * 109.47479 * 305.00683 * 3 2 1 5 5 C 1.50701 * 109.47438 * 185.00378 * 3 2 1 6 6 H 1.07999 * 119.99963 * 240.00617 * 5 3 2 7 7 C 1.37872 * 120.00040 * 60.00336 * 5 3 2 8 8 N 1.31515 * 119.99891 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00086 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47186 * 59.99992 * 9 7 5 11 11 H 1.48501 * 109.47008 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46893 * 299.99629 * 9 7 5 13 13 N 1.46502 * 109.46883 * 65.00438 * 3 2 1 14 14 C 1.34778 * 120.00358 * 275.00035 * 13 3 2 15 15 O 1.21598 * 119.99421 * 0.02562 * 14 13 3 16 16 N 1.34768 * 120.00354 * 179.97438 * 14 13 3 17 17 C 1.40077 * 120.00034 * 174.36789 * 16 14 13 18 18 C 1.38699 * 120.04606 * 335.21194 * 17 16 14 19 19 C 1.38724 * 119.89521 * 179.77168 * 18 17 16 20 20 N 1.40304 * 120.00946 * 180.21172 * 19 18 17 21 21 C 1.35054 * 127.38562 * 184.95388 * 20 19 18 22 22 N 1.30742 * 107.27565 * 179.84385 * 21 20 19 23 23 N 1.28425 * 110.64720 * 0.44333 * 22 21 20 24 24 N 1.28945 * 110.19457 * 359.72242 * 23 22 21 25 25 C 1.38847 * 119.97666 * 0.46095 * 19 18 17 26 26 C 1.38172 * 120.09066 * 359.79094 * 25 19 18 27 27 C 1.38333 * 120.10894 * 0.02562 * 26 25 19 28 28 F 1.35109 * 119.99094 * 179.97438 * 27 26 25 29 29 H 1.09004 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47551 * 59.99405 * 1 2 3 31 31 H 1.09002 * 109.46959 * 299.99052 * 1 2 3 32 32 H 1.09000 * 109.47635 * 120.00427 * 2 1 3 33 33 H 1.09005 * 109.46714 * 240.00490 * 2 1 3 34 34 H 0.97001 * 120.00325 * 180.02562 * 8 7 5 35 35 H 0.97006 * 120.00069 * 95.00132 * 13 3 2 36 36 H 0.96998 * 120.00308 * 354.36079 * 16 14 13 37 37 H 1.08001 * 120.05245 * 359.97438 * 18 17 16 38 38 H 1.08002 * 126.36002 * 0.02562 * 21 20 19 39 39 H 1.07993 * 119.95414 * 179.77478 * 25 19 18 40 40 H 1.08003 * 119.94701 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8786 -1.2281 8 7 3.4060 0.3377 -2.1734 9 14 6.0049 0.8802 -1.3814 10 1 6.5967 0.1454 -0.2346 11 1 6.3977 0.2171 -2.6507 12 1 6.5003 2.2801 -1.3810 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3416 2.6317 0.4323 16 7 0.0785 3.2663 2.5190 17 6 -1.1373 3.9571 2.6010 18 6 -1.7233 4.4700 1.4532 19 6 -2.9298 5.1495 1.5374 20 7 -3.5270 5.6654 0.3773 21 6 -4.6412 6.4243 0.2966 22 7 -4.8414 6.6869 -0.9684 23 7 -3.9348 6.1381 -1.6938 24 7 -3.0974 5.4980 -0.9510 25 6 -3.5435 5.3234 2.7707 26 6 -2.9564 4.8168 3.9142 27 6 -1.7553 4.1353 3.8340 28 9 -1.1830 3.6413 4.9538 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 3.8291 -0.0607 -2.9502 35 1 2.2721 2.1230 1.9979 36 1 0.6636 3.2211 3.2913 37 1 -1.2428 4.3376 0.4951 38 1 -5.2516 6.7555 1.1238 39 1 -4.4809 5.8557 2.8362 40 1 -3.4356 4.9538 4.8724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157362346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:33 Heat of formation + Delta-G solvation = 62.236323 kcal Electronic energy + Delta-G solvation = -28302.109980 eV Core-core repulsion = 24069.073029 eV Total energy + Delta-G solvation = -4233.036951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.00341 -44.29398 -41.80355 -40.11526 -37.51205 -36.40981 -35.28783 -34.37757 -33.44793 -32.84354 -31.34971 -30.38922 -28.79752 -26.15429 -25.50600 -24.85747 -23.54798 -23.19893 -22.18888 -21.43625 -20.13850 -19.83718 -18.70238 -18.27763 -17.74329 -17.67801 -17.38035 -17.04530 -16.76814 -16.60016 -16.42000 -15.84582 -15.26344 -14.97873 -14.74910 -14.58314 -14.54191 -14.44380 -14.11326 -13.91788 -13.57059 -13.36780 -13.20840 -12.92430 -12.81874 -12.70310 -12.59700 -12.20665 -12.14049 -12.10182 -11.69134 -11.64269 -11.49354 -11.14047 -11.02010 -10.55841 -9.87068 -9.74957 -9.16509 -8.17929 -6.35611 -0.80260 0.00640 0.40485 0.73043 1.18753 1.43169 1.45666 1.52167 1.57406 2.02876 2.39823 2.47487 2.93906 3.03033 3.11823 3.31563 3.36897 3.66340 3.72962 3.87597 4.11762 4.22112 4.32245 4.46012 4.53404 4.54235 4.72351 4.85264 4.90034 5.01398 5.08641 5.14552 5.21199 5.38099 5.40362 5.48984 5.57090 5.66134 5.74773 5.81556 6.10941 6.14679 6.71588 7.10267 7.26732 7.32123 7.58197 8.87263 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.003239 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.600165 B = 8641.367157 C =10046.072048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.710 5.710 14 C 0.692 3.308 15 O -0.602 6.602 16 N -0.675 5.675 17 C 0.153 3.847 18 C -0.126 4.126 19 C 0.126 3.874 20 N -0.325 5.325 21 C 0.249 3.751 22 N -0.359 5.359 23 N -0.066 5.066 24 N -0.112 5.112 25 C -0.091 4.091 26 C -0.084 4.084 27 C 0.070 3.930 28 F -0.130 7.130 29 H 0.043 0.957 30 H 0.023 0.977 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.424 0.576 37 H 0.132 0.868 38 H 0.309 0.691 39 H 0.203 0.797 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 11.161 19.763 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.362 5.362 14 C 0.392 3.608 15 O -0.482 6.482 16 N -0.323 5.323 17 C 0.054 3.946 18 C -0.149 4.149 19 C 0.033 3.967 20 N -0.115 5.115 21 C -0.046 4.046 22 N -0.208 5.208 23 N -0.061 5.061 24 N -0.097 5.097 25 C -0.113 4.113 26 C -0.103 4.103 27 C 0.047 3.953 28 F -0.109 7.109 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.262 0.738 37 H 0.150 0.850 38 H 0.324 0.676 39 H 0.219 0.781 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -15.091 10.905 17.262 25.390 hybrid contribution 1.978 -0.603 0.718 2.189 sum -13.113 10.302 17.980 24.522 Atomic orbital electron populations 1.21638 0.97132 0.98917 1.00051 1.21803 0.93551 0.99203 1.01429 1.18296 0.93556 0.88836 0.79963 0.98265 1.21519 0.91220 1.39229 1.06851 0.90876 1.25753 1.03296 0.94335 0.94966 1.70042 1.37173 1.38140 1.09814 0.85424 0.79075 0.78395 0.77596 1.18750 1.21292 1.19788 1.45482 1.13605 1.58523 1.18626 1.16171 0.83211 0.78686 0.82714 1.90913 1.52351 1.65074 1.39814 1.42480 1.20663 1.54538 1.14637 1.17429 0.88058 0.96034 0.93085 1.20934 0.96127 0.98016 0.99820 1.17649 0.94497 1.00995 0.83516 1.49116 1.20257 1.35849 1.06322 1.28685 0.87453 0.89532 0.98924 1.74368 1.21168 1.23382 1.01922 1.78124 0.98883 1.05024 1.24074 1.82925 1.20586 1.20962 0.85273 1.21181 1.02213 1.01272 0.86628 1.21274 0.91792 0.95640 1.01584 1.17618 0.94882 1.02645 0.80146 1.91523 1.84367 1.85920 1.49050 0.93784 0.95781 0.94000 0.93850 0.90895 0.92560 0.76189 0.73772 0.85010 0.67600 0.78053 0.78122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.87 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.30 15.05 2.24 44.24 0.10 15.15 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.55 -28.69 8.73 25.60 0.22 -28.47 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.91 5.29 84.65 0.45 1.36 16 8 N -0.91 -52.33 11.29 21.45 0.24 -52.08 16 9 Si 0.97 41.89 29.54 68.60 2.03 43.91 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 N -0.71 -28.42 5.03 -461.41 -2.32 -30.74 16 14 C 0.69 26.75 6.94 179.06 1.24 28.00 16 15 O -0.60 -28.22 10.64 -4.02 -0.04 -28.26 16 16 N -0.68 -18.96 5.32 -317.04 -1.69 -20.65 16 17 C 0.15 3.86 6.44 38.13 0.25 4.10 16 18 C -0.13 -3.66 8.37 22.50 0.19 -3.47 16 19 C 0.13 2.55 6.70 38.05 0.25 2.80 16 20 N -0.33 -7.53 3.85 -191.08 -0.74 -8.26 16 21 C 0.25 3.68 12.15 180.19 2.19 5.87 16 22 N -0.36 -8.97 12.15 -60.14 -0.73 -9.70 16 23 N -0.07 -2.20 13.39 37.02 0.50 -1.70 16 24 N -0.11 -3.86 13.34 37.02 0.49 -3.37 16 25 C -0.09 -0.72 9.49 22.40 0.21 -0.50 16 26 C -0.08 -0.66 10.01 22.28 0.22 -0.44 16 27 C 0.07 1.18 7.31 22.49 0.16 1.34 16 28 F -0.13 -2.18 16.80 44.97 0.76 -1.42 16 29 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.02 1.19 7.84 -2.39 -0.02 1.17 16 31 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 4.02 5.95 -2.38 -0.01 4.01 16 34 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.40 13.34 8.56 -92.70 -0.79 12.55 16 36 H 0.42 9.04 8.46 -92.71 -0.78 8.26 16 37 H 0.13 5.26 5.51 -2.91 -0.02 5.24 16 38 H 0.31 -0.70 7.21 -2.91 -0.02 -0.72 16 39 H 0.20 -0.78 6.89 -2.91 -0.02 -0.80 16 40 H 0.20 -0.16 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -81.80 344.33 4.33 -77.47 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -0.43 Total: 19.71 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.27 Total: 15.10 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -4.24 Total: -126.51 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.04 Total: -28.26 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.76 Total: -1.42 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -81.80 4.33 -77.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157362346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.707 kcal (2) G-P(sol) polarization free energy of solvation -81.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds