Wall clock time and date at job start Tue Mar 31 2020 17:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47034 * 2 1 4 4 C 1.50697 * 109.47607 * 120.00343 * 2 1 3 5 5 C 1.38381 * 119.84845 * 302.56761 * 4 2 1 6 6 C 1.37943 * 120.14234 * 179.97438 * 5 4 2 7 7 C 1.39592 * 119.85126 * 359.97438 * 6 5 4 8 8 C 1.47848 * 120.13967 * 180.02562 * 7 6 5 9 9 O 1.21563 * 119.99714 * 187.79914 * 8 7 6 10 10 N 1.34775 * 120.00658 * 7.79801 * 8 7 6 11 11 C 1.47570 * 134.49652 * 177.45176 * 10 8 7 12 12 C 1.53948 * 86.11963 * 204.65639 * 11 10 8 13 13 O 1.42898 * 113.74089 * 90.73493 * 12 11 10 14 14 C 1.50694 * 113.74342 * 221.94228 * 12 11 10 15 15 H 1.08003 * 120.00288 * 358.07222 * 14 12 11 16 16 C 1.37875 * 120.00122 * 178.07256 * 14 12 11 17 17 N 1.31511 * 120.00393 * 179.97438 * 16 14 12 18 18 Si 1.86806 * 119.99854 * 359.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 90.00281 * 18 16 14 20 20 H 1.48507 * 109.47068 * 209.99896 * 18 16 14 21 21 H 1.48501 * 109.47029 * 329.99856 * 18 16 14 22 22 C 1.47930 * 134.49728 * 357.47774 * 10 8 7 23 23 C 1.39558 * 119.71499 * 0.27496 * 7 6 5 24 24 C 1.37982 * 119.84717 * 359.42558 * 23 7 6 25 25 N 1.48012 * 119.92584 * 180.29558 * 24 23 7 26 26 O 1.21801 * 120.00222 * 139.02022 * 25 24 23 27 27 O 1.21803 * 120.00151 * 319.01690 * 25 24 23 28 28 H 1.09007 * 109.47116 * 59.99755 * 1 2 3 29 29 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47488 * 299.99862 * 1 2 3 31 31 H 1.09005 * 109.47183 * 240.00772 * 2 1 3 32 32 H 1.09003 * 109.46844 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47379 * 300.00181 * 3 2 1 34 34 H 1.09007 * 109.46963 * 60.00607 * 3 2 1 35 35 H 1.07995 * 119.93364 * 0.02562 * 5 4 2 36 36 H 1.08006 * 120.07211 * 180.02562 * 6 5 4 37 37 H 1.09004 * 113.77433 * 90.35433 * 11 10 8 38 38 H 1.08999 * 113.87272 * 318.96652 * 11 10 8 39 39 H 0.96699 * 113.99832 * 181.93146 * 13 12 11 40 40 H 0.96999 * 120.00561 * 180.02562 * 17 16 14 41 41 H 1.09004 * 113.87066 * 41.07761 * 22 10 8 42 42 H 1.09006 * 113.76593 * 269.58734 * 22 10 8 43 43 H 1.08000 * 120.07622 * 179.70085 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6529 -0.2669 2.4850 6 6 2.1088 -0.9130 3.6153 7 6 2.9543 -2.0168 3.4913 8 6 3.4463 -2.7144 4.6984 9 8 4.2911 -3.5826 4.5968 10 7 2.9582 -2.3879 5.9115 11 6 3.1740 -2.8896 7.2825 12 6 1.7724 -2.3342 7.5942 13 8 0.7205 -3.2796 7.3899 14 6 1.6803 -1.6310 8.9238 15 1 2.5442 -1.5826 9.5701 16 6 0.4932 -1.0492 9.3152 17 7 0.4126 -0.4358 10.4757 18 14 -1.0009 -1.1322 8.1970 19 1 -1.7848 -2.3544 8.5081 20 1 -1.8485 0.0679 8.4135 21 1 -0.5572 -1.1758 6.7805 22 6 1.9906 -1.3830 6.4037 23 6 3.3374 -2.4557 2.2231 24 6 2.8692 -1.8043 1.1005 25 7 3.2691 -2.2724 -0.2455 26 8 2.4500 -2.3079 -1.1462 27 8 4.4174 -2.6220 -0.4525 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.9978 0.5864 2.5796 36 1 1.8116 -0.5661 4.5940 37 1 3.9769 -2.3803 7.8155 38 1 3.2410 -3.9755 7.3494 39 1 -0.1640 -2.9259 7.5563 40 1 -0.4226 -0.0269 10.7513 41 1 1.1131 -1.2669 5.7674 42 1 2.4467 -0.4320 6.6790 43 1 3.9951 -3.3062 2.1206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193975350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:17 Heat of formation + Delta-G solvation = -2.048416 kcal Electronic energy + Delta-G solvation = -29170.277259 eV Core-core repulsion = 24993.327515 eV Total energy + Delta-G solvation = -4176.949744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51002 -40.65259 -39.47741 -37.88563 -36.83463 -35.66279 -34.74514 -32.72265 -32.45249 -30.87095 -29.06907 -27.57185 -26.97209 -26.01644 -25.73898 -24.19103 -22.87620 -21.08662 -20.69785 -19.71685 -18.90995 -18.63710 -17.92136 -17.65803 -16.93250 -16.61492 -16.12089 -15.72110 -15.46515 -15.18499 -14.76480 -14.35383 -14.18277 -13.93326 -13.84025 -13.43153 -13.32225 -13.02649 -12.92352 -12.59884 -12.47446 -12.34219 -12.32010 -12.02787 -11.62939 -11.60177 -11.53146 -11.42566 -11.27317 -11.11034 -10.79523 -10.61760 -10.31145 -10.10961 -9.88790 -9.54873 -9.43499 -9.20261 -8.87722 -8.33211 -6.57441 -4.65124 -0.22643 0.35874 0.91281 1.16085 2.50862 2.81078 2.85482 2.96095 3.02016 3.41170 3.83151 3.86787 4.01376 4.27052 4.44887 4.51308 4.54925 4.66314 4.68003 4.68913 4.88992 5.00294 5.18076 5.21930 5.28017 5.30373 5.39918 5.46448 5.51539 5.62191 5.71931 5.73041 5.80448 5.82869 5.84276 5.90491 5.95026 6.12543 6.19056 6.27010 6.38275 7.01422 7.43748 7.85875 7.92351 8.22349 8.32212 8.47080 8.98706 10.54555 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.003509 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.492673 B = 7978.583215 C = 9172.471020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.000 4.000 5 C -0.119 4.119 6 C -0.055 4.055 7 C -0.116 4.116 8 C 0.573 3.427 9 O -0.546 6.546 10 N -0.625 5.625 11 C 0.131 3.869 12 C 0.199 3.801 13 O -0.552 6.552 14 C -0.539 4.539 15 H 0.093 0.907 16 C 0.082 3.918 17 N -0.872 5.872 18 Si 0.857 3.143 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.259 1.259 22 C 0.047 3.953 23 C -0.005 4.005 24 C -0.046 4.046 25 N 0.028 4.972 26 O -0.151 6.151 27 O -0.148 6.148 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.152 0.848 36 H 0.164 0.836 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.353 0.647 40 H 0.272 0.728 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 5.073 -16.681 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.001 4.001 5 C -0.137 4.137 6 C -0.073 4.073 7 C -0.119 4.119 8 C 0.362 3.638 9 O -0.425 6.425 10 N -0.357 5.357 11 C 0.010 3.990 12 C 0.158 3.842 13 O -0.363 6.363 14 C -0.577 4.577 15 H 0.111 0.889 16 C -0.124 4.124 17 N -0.507 5.507 18 Si 0.685 3.315 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.076 4.076 23 C -0.025 4.025 24 C -0.128 4.128 25 N 0.550 4.450 26 O -0.367 6.367 27 O -0.368 6.368 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.205 0.795 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.518 4.521 -16.242 16.868 hybrid contribution -1.223 0.325 -0.668 1.431 sum -1.742 4.847 -16.910 17.677 Atomic orbital electron populations 1.21794 0.92447 1.02801 1.02530 1.20743 0.97935 0.96812 0.95319 1.21889 1.01228 0.94240 1.02886 1.19920 0.91260 0.91600 0.97363 1.21058 1.01361 1.01451 0.89831 1.22640 0.91172 0.92036 1.01468 1.19942 1.00817 0.98087 0.93100 1.17499 0.81309 0.83073 0.81880 1.90776 1.32617 1.33258 1.85896 1.50059 1.43368 1.36735 1.05562 1.23378 0.97636 1.00794 0.77241 1.20517 0.85481 0.85868 0.92375 1.86484 1.16670 1.41175 1.91953 1.21203 1.00047 1.35137 1.01321 0.88872 1.25005 0.98440 0.94096 0.94868 1.69842 1.27283 1.34065 1.19481 0.87378 0.83956 0.78736 0.81423 1.19146 1.20745 1.18403 1.25054 0.90843 0.95223 0.96439 1.20927 0.94439 0.98236 0.88940 1.20666 1.07599 1.02289 0.82236 1.43537 1.00417 0.98325 1.02741 1.94448 1.47684 1.56934 1.37651 1.94580 1.04127 1.49592 1.88455 0.91402 0.91920 0.92149 0.87685 0.92624 0.91279 0.91857 0.83056 0.81868 0.88193 0.90107 0.79462 0.91707 0.90399 0.87771 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.98 37.16 0.33 -0.72 16 2 C -0.09 -0.81 2.83 -91.77 -0.26 -1.07 16 3 C -0.15 -1.09 9.03 37.16 0.34 -0.75 16 4 C 0.00 0.00 4.78 -104.54 -0.50 -0.50 16 5 C -0.12 -1.19 8.70 -39.64 -0.34 -1.54 16 6 C -0.06 -0.67 9.12 -39.18 -0.36 -1.03 16 7 C -0.12 -1.71 5.87 -104.97 -0.62 -2.33 16 8 C 0.57 10.36 7.99 -12.33 -0.10 10.26 16 9 O -0.55 -11.37 17.10 5.31 0.09 -11.28 16 10 N -0.62 -11.24 3.61 -179.13 -0.65 -11.89 16 11 C 0.13 2.46 8.23 -2.97 -0.02 2.44 16 12 C 0.20 4.07 1.06 -90.85 -0.10 3.98 16 13 O -0.55 -11.88 13.35 -35.23 -0.47 -12.35 16 14 C -0.54 -12.77 9.19 -34.44 -0.32 -13.09 16 15 H 0.09 2.38 8.06 -52.48 -0.42 1.96 16 16 C 0.08 1.98 5.47 -17.82 -0.10 1.89 16 17 N -0.87 -22.90 13.96 55.43 0.77 -22.12 16 18 Si 0.86 17.10 24.31 -169.99 -4.13 12.97 16 19 H -0.27 -5.26 7.05 56.52 0.40 -4.87 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.26 -4.61 5.16 56.52 0.29 -4.32 16 22 C 0.05 0.80 5.02 -2.77 -0.01 0.79 16 23 C -0.01 -0.08 9.24 -39.18 -0.36 -0.44 16 24 C -0.05 -0.60 6.42 -80.01 -0.51 -1.12 16 25 N 0.03 0.39 4.16 33.93 0.14 0.53 16 26 O -0.15 -2.08 16.27 -29.46 -0.48 -2.56 16 27 O -0.15 -2.22 19.02 -29.46 -0.56 -2.78 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.40 7.23 -51.93 -0.38 0.02 16 31 H 0.11 1.10 4.90 -51.93 -0.25 0.84 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.41 7.53 -51.93 -0.39 0.02 16 35 H 0.15 1.08 7.08 -52.49 -0.37 0.71 16 36 H 0.16 1.93 3.80 -52.48 -0.20 1.73 16 37 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.35 7.21 3.57 45.56 0.16 7.38 16 40 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 41 H 0.08 1.23 4.97 -51.93 -0.26 0.97 16 42 H 0.10 1.64 8.09 -51.93 -0.42 1.22 16 43 H 0.16 2.31 7.67 -52.49 -0.40 1.91 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -28.56 353.02 -7.61 -36.17 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.71 Total: 11.23 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.93 Total: -3.22 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.27 Total: -33.48 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -1.42 Total: -28.98 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -4.13 Total: 12.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.56 -7.61 -36.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193975350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.119 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds