Wall clock time and date at job start Tue Mar 31 2020 17:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47034 * 2 1 4 4 C 1.50697 * 109.47607 * 120.00343 * 2 1 3 5 5 C 1.38381 * 119.84845 * 302.56761 * 4 2 1 6 6 C 1.37943 * 120.14234 * 179.97438 * 5 4 2 7 7 C 1.39592 * 119.85126 * 359.97438 * 6 5 4 8 8 C 1.47848 * 120.13967 * 180.02562 * 7 6 5 9 9 O 1.21563 * 119.99714 * 187.79914 * 8 7 6 10 10 N 1.34775 * 120.00658 * 7.79801 * 8 7 6 11 11 C 1.47570 * 134.49652 * 177.45176 * 10 8 7 12 12 C 1.53948 * 86.11963 * 204.65639 * 11 10 8 13 13 O 1.42898 * 113.74089 * 90.73493 * 12 11 10 14 14 C 1.50694 * 113.74342 * 221.94228 * 12 11 10 15 15 H 1.08003 * 120.00288 * 358.07222 * 14 12 11 16 16 C 1.37875 * 120.00122 * 178.07256 * 14 12 11 17 17 N 1.31511 * 120.00393 * 179.97438 * 16 14 12 18 18 Si 1.86806 * 119.99854 * 359.97438 * 16 14 12 19 19 H 1.48499 * 109.47156 * 90.00281 * 18 16 14 20 20 H 1.48507 * 109.47068 * 209.99896 * 18 16 14 21 21 H 1.48501 * 109.47029 * 329.99856 * 18 16 14 22 22 C 1.47930 * 134.49728 * 357.47774 * 10 8 7 23 23 C 1.39558 * 119.71499 * 0.27496 * 7 6 5 24 24 C 1.37982 * 119.84717 * 359.42558 * 23 7 6 25 25 N 1.48012 * 119.92584 * 180.29558 * 24 23 7 26 26 O 1.21801 * 120.00222 * 139.02022 * 25 24 23 27 27 O 1.21803 * 120.00151 * 319.01690 * 25 24 23 28 28 H 1.09007 * 109.47116 * 59.99755 * 1 2 3 29 29 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47488 * 299.99862 * 1 2 3 31 31 H 1.09005 * 109.47183 * 240.00772 * 2 1 3 32 32 H 1.09003 * 109.46844 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47379 * 300.00181 * 3 2 1 34 34 H 1.09007 * 109.46963 * 60.00607 * 3 2 1 35 35 H 1.07995 * 119.93364 * 0.02562 * 5 4 2 36 36 H 1.08006 * 120.07211 * 180.02562 * 6 5 4 37 37 H 1.09004 * 113.77433 * 90.35433 * 11 10 8 38 38 H 1.08999 * 113.87272 * 318.96652 * 11 10 8 39 39 H 0.96699 * 113.99832 * 181.93146 * 13 12 11 40 40 H 0.96999 * 120.00561 * 180.02562 * 17 16 14 41 41 H 1.09004 * 113.87066 * 41.07761 * 22 10 8 42 42 H 1.09006 * 113.76593 * 269.58734 * 22 10 8 43 43 H 1.08000 * 120.07622 * 179.70085 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6529 -0.2669 2.4850 6 6 2.1088 -0.9130 3.6153 7 6 2.9543 -2.0168 3.4913 8 6 3.4463 -2.7144 4.6984 9 8 4.2911 -3.5826 4.5968 10 7 2.9582 -2.3879 5.9115 11 6 3.1740 -2.8896 7.2825 12 6 1.7724 -2.3342 7.5942 13 8 0.7205 -3.2796 7.3899 14 6 1.6803 -1.6310 8.9238 15 1 2.5442 -1.5826 9.5701 16 6 0.4932 -1.0492 9.3152 17 7 0.4126 -0.4358 10.4757 18 14 -1.0009 -1.1322 8.1970 19 1 -1.7848 -2.3544 8.5081 20 1 -1.8485 0.0679 8.4135 21 1 -0.5572 -1.1758 6.7805 22 6 1.9906 -1.3830 6.4037 23 6 3.3374 -2.4557 2.2231 24 6 2.8692 -1.8043 1.1005 25 7 3.2691 -2.2724 -0.2455 26 8 2.4500 -2.3079 -1.1462 27 8 4.4174 -2.6220 -0.4525 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.9978 0.5864 2.5796 36 1 1.8116 -0.5661 4.5940 37 1 3.9769 -2.3803 7.8155 38 1 3.2410 -3.9755 7.3494 39 1 -0.1640 -2.9259 7.5563 40 1 -0.4226 -0.0269 10.7513 41 1 1.1131 -1.2669 5.7674 42 1 2.4467 -0.4320 6.6790 43 1 3.9951 -3.3062 2.1206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193975350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:16 Heat of formation + Delta-G solvation = -20.394645 kcal Electronic energy + Delta-G solvation = -29171.072811 eV Core-core repulsion = 24993.327515 eV Total energy + Delta-G solvation = -4177.745296 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.57346 -41.93479 -40.66219 -39.31057 -37.92542 -36.53574 -36.32800 -34.55033 -33.48205 -31.88456 -30.52602 -28.20914 -28.08772 -27.46736 -27.13943 -25.28866 -23.90092 -22.35035 -21.61947 -21.08116 -20.03364 -19.90540 -19.35970 -18.98025 -18.35684 -17.89556 -17.39886 -16.85236 -16.70138 -16.45917 -15.65911 -15.55660 -15.41174 -15.06142 -14.98055 -14.79754 -14.57920 -14.28669 -14.15102 -13.88266 -13.60564 -13.40701 -13.07509 -12.97767 -12.89909 -12.68490 -12.65033 -12.44692 -12.38574 -12.23895 -12.20217 -11.93227 -11.62902 -11.42928 -11.14858 -10.96137 -10.85625 -10.49982 -10.41266 -9.80538 -8.40856 -6.55191 -1.26185 -0.68154 -0.10938 0.12633 1.25326 1.30657 1.37696 1.44041 1.59098 2.19959 2.23266 2.75407 2.87521 3.06382 3.23923 3.30747 3.51942 3.57034 3.73810 3.74241 3.93960 4.08305 4.16480 4.21092 4.29597 4.32740 4.50712 4.53496 4.59448 4.66887 4.71283 4.74755 4.76236 4.85961 4.87433 4.92775 4.93321 5.12345 5.22594 5.27197 5.30000 5.35887 6.04916 6.32053 6.49265 6.55766 6.67528 6.81743 7.13572 8.74345 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.003509 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.492673 B = 7978.583215 C = 9172.471020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.011 3.989 5 C -0.101 4.101 6 C -0.046 4.046 7 C -0.132 4.132 8 C 0.571 3.429 9 O -0.585 6.585 10 N -0.624 5.624 11 C 0.125 3.875 12 C 0.188 3.812 13 O -0.561 6.561 14 C -0.545 4.545 15 H 0.056 0.944 16 C 0.029 3.971 17 N -0.924 5.924 18 Si 0.915 3.085 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.217 1.217 22 C 0.061 3.939 23 C -0.013 4.013 24 C -0.056 4.056 25 N 0.029 4.971 26 O -0.130 6.130 27 O -0.190 6.190 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.196 0.804 36 H 0.174 0.826 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.358 0.642 40 H 0.274 0.726 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 7.274 -19.048 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.201 4.201 4 C 0.009 3.991 5 C -0.119 4.119 6 C -0.064 4.064 7 C -0.136 4.136 8 C 0.362 3.638 9 O -0.467 6.467 10 N -0.356 5.356 11 C 0.003 3.997 12 C 0.147 3.853 13 O -0.373 6.373 14 C -0.583 4.583 15 H 0.074 0.926 16 C -0.172 4.172 17 N -0.561 5.561 18 Si 0.739 3.261 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.141 1.141 22 C -0.060 4.060 23 C -0.033 4.033 24 C -0.138 4.138 25 N 0.549 4.451 26 O -0.354 6.354 27 O -0.399 6.399 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.213 0.787 36 H 0.191 0.809 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.211 0.789 40 H 0.083 0.917 41 H 0.122 0.878 42 H 0.140 0.860 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.032 6.707 -18.610 20.012 hybrid contribution -0.412 -0.368 0.085 0.559 sum -3.444 6.339 -18.525 19.880 Atomic orbital electron populations 1.21828 0.90711 1.02674 1.04252 1.20819 0.99198 0.97411 0.93407 1.21915 1.00496 0.93109 1.04588 1.20345 0.89539 0.90234 0.98933 1.21478 1.00542 1.01664 0.88171 1.22717 0.90109 0.90818 1.02716 1.19634 1.02944 0.99624 0.91410 1.17988 0.80662 0.82590 0.82563 1.90750 1.34430 1.35090 1.86464 1.49997 1.43563 1.36868 1.05194 1.23376 0.97385 1.00497 0.78418 1.20537 0.85878 0.86615 0.92255 1.86484 1.17118 1.41835 1.91853 1.21300 0.99112 1.35350 1.02552 0.92615 1.25846 1.01744 0.93360 0.96268 1.69997 1.28348 1.35806 1.21933 0.86399 0.79537 0.78621 0.81517 1.18971 1.20667 1.14071 1.24978 0.91660 0.94763 0.94608 1.20769 0.94752 0.98322 0.89501 1.20755 1.08634 1.03307 0.81149 1.43691 1.00204 0.98086 1.03165 1.94421 1.47393 1.55505 1.38081 1.94591 1.04731 1.51654 1.88917 0.89958 0.92975 0.90274 0.89395 0.93859 0.89815 0.90021 0.78719 0.80892 0.87392 0.90994 0.78917 0.91674 0.87759 0.85977 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.98 71.98 0.65 -0.78 16 2 C -0.09 -1.29 2.83 -11.54 -0.03 -1.32 16 3 C -0.14 -1.53 9.03 71.98 0.65 -0.88 16 4 C 0.01 0.21 4.78 -19.81 -0.09 0.11 16 5 C -0.10 -1.49 8.70 22.23 0.19 -1.30 16 6 C -0.05 -0.93 9.12 22.53 0.21 -0.72 16 7 C -0.13 -3.70 5.87 -20.09 -0.12 -3.82 16 8 C 0.57 20.32 7.99 86.79 0.69 21.01 16 9 O -0.58 -24.96 17.10 -3.91 -0.07 -25.03 16 10 N -0.62 -21.63 3.61 -842.74 -3.05 -24.67 16 11 C 0.13 4.72 8.23 86.49 0.71 5.43 16 12 C 0.19 7.46 1.06 -10.88 -0.01 7.45 16 13 O -0.56 -23.04 13.35 -148.98 -1.99 -25.03 16 14 C -0.55 -26.00 9.19 25.60 0.24 -25.77 16 15 H 0.06 2.99 8.06 -2.91 -0.02 2.96 16 16 C 0.03 1.41 5.47 84.65 0.46 1.87 16 17 N -0.92 -49.39 13.96 21.45 0.30 -49.09 16 18 Si 0.92 33.27 24.31 68.60 1.67 34.94 16 19 H -0.26 -9.53 7.05 99.48 0.70 -8.83 16 20 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.22 -6.38 5.16 99.48 0.51 -5.86 16 22 C 0.06 1.91 5.02 86.42 0.43 2.34 16 23 C -0.01 -0.37 9.24 22.53 0.21 -0.16 16 24 C -0.06 -1.40 6.42 36.34 0.23 -1.17 16 25 N 0.03 0.79 4.16 -46.56 -0.19 0.59 16 26 O -0.13 -3.43 16.27 18.89 0.31 -3.12 16 27 O -0.19 -5.84 19.02 18.88 0.36 -5.48 16 28 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.54 7.23 -2.39 -0.02 0.53 16 31 H 0.09 1.60 4.90 -2.38 -0.01 1.59 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.59 7.53 -2.38 -0.02 0.57 16 35 H 0.20 1.28 7.08 -2.91 -0.02 1.26 16 36 H 0.17 3.15 3.80 -2.91 -0.01 3.14 16 37 H 0.11 3.83 8.09 -2.39 -0.02 3.81 16 38 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.36 13.53 3.57 -74.06 -0.26 13.27 16 40 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 41 H 0.10 2.71 4.97 -2.38 -0.01 2.70 16 42 H 0.12 3.41 8.09 -2.38 -0.02 3.39 16 43 H 0.14 4.37 7.67 -2.91 -0.02 4.35 16 Total: -1.00 -65.45 353.02 2.37 -63.08 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.61 Total: 31.51 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.42 Total: 2.30 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -2.94 Total: -73.16 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -1.39 Total: -58.66 kcal Atomic # 14 Polarization: 33.27 SS G_CDS: 1.67 Total: 34.94 kcal Total: -65.45 2.37 -63.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193975350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.684 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds