Wall clock time and date at job start Tue Mar 31 2020 17:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47513 * 305.57898 * 3 2 1 5 5 C 1.50703 * 109.46887 * 185.57941 * 3 2 1 6 6 H 1.08000 * 120.00056 * 245.43016 * 5 3 2 7 7 C 1.37877 * 119.99846 * 65.42484 * 5 3 2 8 8 N 1.31507 * 120.00151 * 9.31123 * 7 5 3 9 9 Si 1.86804 * 119.99853 * 189.31052 * 7 5 3 10 10 H 1.48502 * 109.47267 * 84.99431 * 9 7 5 11 11 H 1.48492 * 109.47143 * 204.99919 * 9 7 5 12 12 H 1.48496 * 109.47225 * 324.99804 * 9 7 5 13 13 N 1.46495 * 109.47025 * 65.58314 * 3 2 1 14 14 C 1.34780 * 119.99779 * 274.99681 * 13 3 2 15 15 O 1.21361 * 119.99896 * 359.72621 * 14 13 3 16 16 C 1.49333 * 119.99709 * 180.02562 * 14 13 3 17 17 O 1.21390 * 120.00473 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99709 * 179.97438 * 16 14 13 19 19 C 1.39852 * 120.00232 * 185.47714 * 18 16 14 20 20 C 1.38918 * 120.02806 * 211.87005 * 19 18 16 21 21 C 1.38094 * 120.03494 * 179.81621 * 20 19 18 22 22 C 1.38742 * 120.16525 * 0.52477 * 21 20 19 23 23 C 1.39027 * 119.94352 * 359.64197 * 22 21 20 24 24 C 1.38614 * 119.88701 * 0.12298 * 23 22 21 25 25 O 1.36116 * 120.77862 * 180.26206 * 23 22 21 26 26 C 1.43164 * 116.73446 * 342.81097 * 25 23 22 27 27 C 1.53471 * 108.24550 * 46.18475 * 26 25 23 28 28 O 1.36198 * 119.31306 * 179.55334 * 22 21 20 29 29 H 1.08994 * 109.47688 * 299.99822 * 1 2 3 30 30 H 1.09002 * 109.47495 * 59.99935 * 1 2 3 31 31 H 1.09005 * 109.47661 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47138 * 240.00002 * 2 1 3 33 33 H 1.09002 * 109.46760 * 120.00180 * 2 1 3 34 34 H 0.97001 * 120.00175 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00311 * 94.99395 * 13 3 2 36 36 H 0.97006 * 120.00124 * 5.47650 * 18 16 14 37 37 H 1.08002 * 119.98266 * 0.07318 * 20 19 18 38 38 H 1.07997 * 119.92084 * 180.26839 * 21 20 19 39 39 H 1.08006 * 119.99082 * 179.97438 * 24 23 22 40 40 H 1.08999 * 109.70925 * 165.87336 * 26 25 23 41 41 H 1.09002 * 109.70594 * 286.49939 * 26 25 23 42 42 H 1.08996 * 109.71068 * 59.91705 * 27 26 25 43 43 H 1.09000 * 109.71041 * 180.54674 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9844 -0.8358 5 6 3.5406 1.4447 -0.1381 6 1 4.1569 1.8067 0.6715 7 6 4.1268 0.9846 -1.2982 8 7 3.3832 0.7167 -2.3492 9 14 5.9773 0.7418 -1.3769 10 1 6.3241 -0.5981 -0.8386 11 1 6.4300 0.8409 -2.7877 12 1 6.6489 1.7896 -0.5668 13 7 1.6644 2.0932 1.2576 14 6 0.4482 2.6597 1.3863 15 8 -0.3338 2.6351 0.4586 16 6 0.0656 3.3235 2.6681 17 8 0.8497 3.3524 3.5944 18 7 -1.1503 3.8904 2.7967 19 6 -1.4674 4.6107 3.9527 20 6 -2.7744 4.6301 4.4231 21 6 -3.0870 5.3381 5.5667 22 6 -2.1003 6.0408 6.2432 23 6 -0.7919 6.0262 5.7732 24 6 -0.4773 5.3115 4.6280 25 8 0.1904 6.7051 6.4265 26 6 -0.2296 7.7100 7.3557 27 6 -1.3506 7.1231 8.2241 28 8 -2.4296 6.7407 7.3642 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7956 0.3933 -3.1655 35 1 2.2910 2.1163 1.9978 36 1 -1.8056 3.7989 2.0872 37 1 -3.5457 4.0877 3.8964 38 1 -4.1028 5.3484 5.9332 39 1 0.5384 5.2994 4.2611 40 1 0.6101 8.0011 7.9868 41 1 -0.6015 8.5795 6.8136 42 1 -0.9808 6.2495 8.7607 43 1 -1.6957 7.8734 8.9354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275748406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:13 Heat of formation + Delta-G solvation = -111.943795 kcal Electronic energy + Delta-G solvation = -28312.242330 eV Core-core repulsion = 24130.527165 eV Total energy + Delta-G solvation = -4181.715165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53066 -40.56080 -38.75044 -37.52915 -37.41281 -35.44341 -34.45190 -32.40623 -31.24265 -31.11254 -30.39873 -28.42403 -27.26735 -25.30401 -24.38274 -23.32165 -22.65095 -21.13237 -20.36579 -19.54575 -18.98729 -18.65183 -17.86119 -17.31012 -16.55011 -16.25091 -15.79472 -15.53104 -15.47662 -15.17269 -15.07938 -14.63336 -14.36540 -14.25966 -14.13770 -13.66595 -13.60660 -13.25817 -12.90095 -12.76950 -12.41449 -12.15040 -11.68330 -11.57479 -11.46908 -11.39782 -11.25963 -11.03687 -10.83725 -10.71172 -10.42878 -10.28422 -10.09016 -9.78347 -9.20932 -9.09429 -8.68389 -8.55583 -8.08623 -7.90913 -6.20856 -4.26684 0.92683 1.11208 1.86628 2.56876 2.75528 3.01535 3.24034 3.30836 3.33226 3.45597 3.73875 3.91968 4.08233 4.33345 4.40628 4.48059 4.57307 4.82855 4.93162 5.04132 5.06862 5.11072 5.12832 5.21459 5.56145 5.62914 5.92220 6.08600 6.08722 6.24995 6.27901 6.47105 6.53126 6.64878 6.88541 6.96581 7.10019 7.13638 7.19222 7.21537 7.44023 7.61631 7.69099 7.87940 7.95714 8.41935 8.61300 8.84729 9.38876 10.87286 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.002449 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.071225 B =11431.837250 C =12513.169594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.266 3.734 4 H 0.062 0.938 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.667 5.667 14 C 0.495 3.505 15 O -0.528 6.528 16 C 0.506 3.494 17 O -0.502 6.502 18 N -0.648 5.648 19 C 0.158 3.842 20 C -0.139 4.139 21 C -0.091 4.091 22 C 0.029 3.971 23 C 0.073 3.927 24 C -0.119 4.119 25 O -0.303 6.303 26 C 0.020 3.980 27 C 0.021 3.979 28 O -0.309 6.309 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.425 0.575 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.910 11.258 17.848 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.165 3.835 4 H 0.080 0.920 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.133 4.133 8 N -0.516 5.516 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.315 5.315 14 C 0.274 3.726 15 O -0.407 6.407 16 C 0.289 3.711 17 O -0.375 6.375 18 N -0.296 5.296 19 C 0.063 3.937 20 C -0.160 4.160 21 C -0.111 4.111 22 C -0.016 4.016 23 C 0.027 3.973 24 C -0.139 4.139 25 O -0.217 6.217 26 C -0.055 4.055 27 C -0.055 4.055 28 O -0.223 6.223 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.236 0.764 36 H 0.264 0.736 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.168 0.832 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.782 11.176 17.600 23.948 hybrid contribution 1.056 -0.081 0.141 1.068 sum -10.726 11.094 17.741 23.513 Atomic orbital electron populations 1.21860 0.97975 0.98582 1.01325 1.21883 0.93041 0.99446 1.01693 1.19033 0.95122 0.89208 0.80141 0.92009 1.21152 0.90212 1.44588 1.01901 0.91755 1.24869 0.98664 0.94917 0.94885 1.69969 1.35781 1.43616 1.02218 0.86482 0.84679 0.78840 0.77282 1.20325 1.21129 1.19790 1.46455 1.13289 1.52568 1.19224 1.19556 0.84615 0.81502 0.86969 1.90749 1.50715 1.59224 1.39966 1.21062 0.81761 0.78822 0.89476 1.90757 1.50005 1.56461 1.40294 1.43219 1.16444 1.50898 1.19028 1.17322 0.93271 0.94083 0.88985 1.20683 0.95312 1.02659 0.97314 1.20155 0.98822 0.96689 0.95398 1.18862 0.92983 0.99646 0.90130 1.18595 0.87020 0.97561 0.94132 1.20375 1.01512 0.98091 0.93957 1.86356 1.31098 1.49524 1.54762 1.23643 0.99777 0.90197 0.91927 1.23612 0.88094 1.01521 0.92284 1.86305 1.33732 1.70093 1.32210 0.94320 0.92751 0.95370 0.89727 0.94330 0.92421 0.76377 0.73631 0.84323 0.84286 0.83219 0.86052 0.90440 0.90481 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.53 37.16 0.32 -2.59 16 2 C -0.12 -2.80 5.50 -26.73 -0.15 -2.95 16 3 C 0.27 6.46 2.10 -69.08 -0.15 6.32 16 4 H 0.06 1.72 7.52 -51.93 -0.39 1.33 16 5 C -0.54 -14.03 8.66 -34.44 -0.30 -14.33 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -24.19 12.15 55.43 0.67 -23.51 16 9 Si 0.90 20.39 29.55 -169.99 -5.02 15.37 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.67 -13.88 5.02 -55.40 -0.28 -14.16 16 14 C 0.50 9.55 6.47 -11.64 -0.08 9.48 16 15 O -0.53 -10.96 13.65 5.49 0.07 -10.89 16 16 C 0.51 8.48 7.63 -11.64 -0.09 8.39 16 17 O -0.50 -9.18 14.09 5.46 0.08 -9.11 16 18 N -0.65 -8.82 5.33 -10.29 -0.05 -8.88 16 19 C 0.16 2.06 6.30 -83.73 -0.53 1.54 16 20 C -0.14 -1.45 9.95 -39.38 -0.39 -1.84 16 21 C -0.09 -0.94 9.95 -39.45 -0.39 -1.33 16 22 C 0.03 0.34 6.50 -39.10 -0.25 0.09 16 23 C 0.07 0.96 6.49 -39.15 -0.25 0.70 16 24 C -0.12 -1.70 8.57 -39.22 -0.34 -2.04 16 25 O -0.30 -3.72 10.42 -32.89 -0.34 -4.07 16 26 C 0.02 0.15 7.26 37.40 0.27 0.42 16 27 C 0.02 0.14 7.26 37.40 0.27 0.41 16 28 O -0.31 -3.19 10.42 -33.15 -0.35 -3.54 16 29 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 30 H 0.05 1.19 7.88 -51.93 -0.41 0.78 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 2.14 6.78 -51.93 -0.35 1.78 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.40 7.88 8.00 -40.82 -0.33 7.56 16 36 H 0.43 4.98 8.29 -40.82 -0.34 4.64 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.15 2.40 6.32 -52.48 -0.33 2.07 16 40 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -30.95 359.71 -7.30 -38.26 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.36 Total: 11.05 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.14 Total: 4.05 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.34 Total: -46.55 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.54 Total: -27.59 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.95 -7.30 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275748406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.689 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds