Wall clock time and date at job start Tue Mar 31 2020 17:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47513 * 305.57898 * 3 2 1 5 5 C 1.50703 * 109.46887 * 185.57941 * 3 2 1 6 6 H 1.08000 * 120.00056 * 245.43016 * 5 3 2 7 7 C 1.37877 * 119.99846 * 65.42484 * 5 3 2 8 8 N 1.31507 * 120.00151 * 9.31123 * 7 5 3 9 9 Si 1.86804 * 119.99853 * 189.31052 * 7 5 3 10 10 H 1.48502 * 109.47267 * 84.99431 * 9 7 5 11 11 H 1.48492 * 109.47143 * 204.99919 * 9 7 5 12 12 H 1.48496 * 109.47225 * 324.99804 * 9 7 5 13 13 N 1.46495 * 109.47025 * 65.58314 * 3 2 1 14 14 C 1.34780 * 119.99779 * 274.99681 * 13 3 2 15 15 O 1.21361 * 119.99896 * 359.72621 * 14 13 3 16 16 C 1.49333 * 119.99709 * 180.02562 * 14 13 3 17 17 O 1.21390 * 120.00473 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99709 * 179.97438 * 16 14 13 19 19 C 1.39852 * 120.00232 * 185.47714 * 18 16 14 20 20 C 1.38918 * 120.02806 * 211.87005 * 19 18 16 21 21 C 1.38094 * 120.03494 * 179.81621 * 20 19 18 22 22 C 1.38742 * 120.16525 * 0.52477 * 21 20 19 23 23 C 1.39027 * 119.94352 * 359.64197 * 22 21 20 24 24 C 1.38614 * 119.88701 * 0.12298 * 23 22 21 25 25 O 1.36116 * 120.77862 * 180.26206 * 23 22 21 26 26 C 1.43164 * 116.73446 * 342.81097 * 25 23 22 27 27 C 1.53471 * 108.24550 * 46.18475 * 26 25 23 28 28 O 1.36198 * 119.31306 * 179.55334 * 22 21 20 29 29 H 1.08994 * 109.47688 * 299.99822 * 1 2 3 30 30 H 1.09002 * 109.47495 * 59.99935 * 1 2 3 31 31 H 1.09005 * 109.47661 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47138 * 240.00002 * 2 1 3 33 33 H 1.09002 * 109.46760 * 120.00180 * 2 1 3 34 34 H 0.97001 * 120.00175 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00311 * 94.99395 * 13 3 2 36 36 H 0.97006 * 120.00124 * 5.47650 * 18 16 14 37 37 H 1.08002 * 119.98266 * 0.07318 * 20 19 18 38 38 H 1.07997 * 119.92084 * 180.26839 * 21 20 19 39 39 H 1.08006 * 119.99082 * 179.97438 * 24 23 22 40 40 H 1.08999 * 109.70925 * 165.87336 * 26 25 23 41 41 H 1.09002 * 109.70594 * 286.49939 * 26 25 23 42 42 H 1.08996 * 109.71068 * 59.91705 * 27 26 25 43 43 H 1.09000 * 109.71041 * 180.54674 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5974 1.9844 -0.8358 5 6 3.5406 1.4447 -0.1381 6 1 4.1569 1.8067 0.6715 7 6 4.1268 0.9846 -1.2982 8 7 3.3832 0.7167 -2.3492 9 14 5.9773 0.7418 -1.3769 10 1 6.3241 -0.5981 -0.8386 11 1 6.4300 0.8409 -2.7877 12 1 6.6489 1.7896 -0.5668 13 7 1.6644 2.0932 1.2576 14 6 0.4482 2.6597 1.3863 15 8 -0.3338 2.6351 0.4586 16 6 0.0656 3.3235 2.6681 17 8 0.8497 3.3524 3.5944 18 7 -1.1503 3.8904 2.7967 19 6 -1.4674 4.6107 3.9527 20 6 -2.7744 4.6301 4.4231 21 6 -3.0870 5.3381 5.5667 22 6 -2.1003 6.0408 6.2432 23 6 -0.7919 6.0262 5.7732 24 6 -0.4773 5.3115 4.6280 25 8 0.1904 6.7051 6.4265 26 6 -0.2296 7.7100 7.3557 27 6 -1.3506 7.1231 8.2241 28 8 -2.4296 6.7407 7.3642 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7956 0.3933 -3.1655 35 1 2.2910 2.1163 1.9978 36 1 -1.8056 3.7989 2.0872 37 1 -3.5457 4.0877 3.8964 38 1 -4.1028 5.3484 5.9332 39 1 0.5384 5.2994 4.2611 40 1 0.6101 8.0011 7.9868 41 1 -0.6015 8.5795 6.8136 42 1 -0.9808 6.2495 8.7607 43 1 -1.6957 7.8734 8.9354 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275748406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:12 Heat of formation + Delta-G solvation = -133.964008 kcal Electronic energy + Delta-G solvation = -28313.197198 eV Core-core repulsion = 24130.527165 eV Total energy + Delta-G solvation = -4182.670033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43714 -41.81564 -40.16524 -38.61432 -38.23860 -37.17254 -35.65472 -34.30140 -32.89705 -31.99550 -31.28883 -29.42524 -29.02873 -26.48595 -25.46185 -24.82036 -23.91531 -22.17347 -21.72021 -21.23444 -20.17194 -19.72224 -18.80767 -18.42236 -17.90282 -17.72271 -17.15301 -16.90480 -16.75326 -16.38102 -15.97664 -15.89360 -15.61980 -15.41125 -15.08236 -15.02708 -14.66189 -14.59949 -14.26752 -13.94621 -13.65331 -13.46185 -13.31224 -13.26644 -12.98462 -12.71433 -12.60480 -12.49355 -12.19334 -12.13055 -12.00100 -11.63244 -11.50411 -11.15299 -11.10109 -10.61878 -10.54980 -9.86177 -9.61918 -8.84097 -8.22516 -6.35154 -0.13588 0.21913 0.56407 1.28646 1.44712 1.46095 1.55350 1.99387 2.13816 2.26293 2.39994 2.65069 2.78910 3.09613 3.26941 3.50321 3.65339 3.94827 4.03691 4.05821 4.16805 4.30350 4.46249 4.47056 4.52195 4.58851 4.62882 4.68286 4.79943 5.02563 5.06182 5.11776 5.17729 5.21513 5.33672 5.37379 5.53619 5.57079 5.67669 5.74411 5.87484 5.99015 6.01084 6.36724 6.54958 6.68014 6.78507 7.09692 7.35532 8.85883 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.020552 B = 0.002449 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.071225 B =11431.837250 C =12513.169594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 C 0.274 3.726 4 H 0.020 0.980 5 C -0.556 4.556 6 H 0.067 0.933 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.671 5.671 14 C 0.497 3.503 15 O -0.543 6.543 16 C 0.514 3.486 17 O -0.521 6.521 18 N -0.630 5.630 19 C 0.137 3.863 20 C -0.123 4.123 21 C -0.088 4.088 22 C 0.029 3.971 23 C 0.058 3.942 24 C -0.142 4.142 25 O -0.329 6.329 26 C 0.012 3.988 27 C 0.016 3.984 28 O -0.315 6.315 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.435 0.565 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 11.803 19.999 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.155 4.155 3 C 0.172 3.828 4 H 0.038 0.962 5 C -0.594 4.594 6 H 0.086 0.914 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.789 3.211 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.320 5.320 14 C 0.277 3.723 15 O -0.422 6.422 16 C 0.296 3.704 17 O -0.396 6.396 18 N -0.278 5.278 19 C 0.043 3.957 20 C -0.143 4.143 21 C -0.107 4.107 22 C -0.016 4.016 23 C 0.012 3.988 24 C -0.162 4.162 25 O -0.245 6.245 26 C -0.063 4.063 27 C -0.058 4.058 28 O -0.230 6.230 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.275 0.725 37 H 0.189 0.811 38 H 0.187 0.813 39 H 0.141 0.859 40 H 0.168 0.832 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.120 11.753 19.784 26.489 hybrid contribution 1.380 -0.107 -0.413 1.444 sum -11.740 11.645 19.371 25.469 Atomic orbital electron populations 1.21717 0.96130 0.99977 1.00697 1.21741 0.94643 0.98311 1.00776 1.18657 0.94267 0.89606 0.80273 0.96189 1.21483 0.91254 1.44537 1.02128 0.91450 1.25668 1.02965 0.94562 0.94502 1.70087 1.37588 1.44391 1.02722 0.85470 0.79412 0.78975 0.77195 1.19549 1.21006 1.19283 1.46238 1.14268 1.53197 1.18342 1.19929 0.83783 0.80771 0.87816 1.90735 1.51014 1.59544 1.40905 1.20395 0.82786 0.79178 0.88013 1.90762 1.50859 1.57514 1.40433 1.43015 1.15251 1.49799 1.19686 1.17489 0.94329 0.94870 0.89002 1.21001 0.94520 1.01780 0.97019 1.20565 0.99863 0.95470 0.94759 1.19086 0.92535 0.99396 0.90605 1.18676 0.87987 0.97980 0.94134 1.20304 1.00739 0.99888 0.95317 1.86310 1.31928 1.50524 1.55692 1.24020 1.01367 0.89249 0.91658 1.23936 0.87321 1.02536 0.92042 1.86296 1.35146 1.69692 1.31889 0.93734 0.94474 0.92911 0.92222 0.93458 0.92366 0.75691 0.72501 0.81142 0.81262 0.85925 0.83210 0.89917 0.90449 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.53 71.98 0.61 -4.67 16 2 C -0.12 -5.42 5.50 30.59 0.17 -5.25 16 3 C 0.27 13.74 2.10 44.25 0.09 13.83 16 4 H 0.02 1.17 7.52 -2.39 -0.02 1.16 16 5 C -0.56 -29.42 8.66 25.60 0.22 -29.20 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.30 5.16 84.66 0.44 1.74 16 8 N -0.91 -51.29 12.15 21.45 0.26 -51.02 16 9 Si 0.96 42.07 29.55 68.60 2.03 44.10 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 N -0.67 -28.61 5.02 -447.56 -2.25 -30.86 16 14 C 0.50 19.50 6.47 87.23 0.56 20.07 16 15 O -0.54 -22.88 13.65 -3.28 -0.04 -22.93 16 16 C 0.51 17.41 7.63 87.23 0.67 18.07 16 17 O -0.52 -19.49 14.09 -3.37 -0.05 -19.54 16 18 N -0.63 -16.82 5.33 -304.82 -1.62 -18.45 16 19 C 0.14 3.47 6.30 38.17 0.24 3.71 16 20 C -0.12 -2.24 9.95 22.40 0.22 -2.02 16 21 C -0.09 -1.54 9.95 22.36 0.22 -1.32 16 22 C 0.03 0.64 6.50 22.58 0.15 0.78 16 23 C 0.06 1.52 6.49 22.55 0.15 1.66 16 24 C -0.14 -4.16 8.57 22.50 0.19 -3.96 16 25 O -0.33 -8.09 10.42 -82.65 -0.86 -8.95 16 26 C 0.01 0.15 7.26 72.14 0.52 0.68 16 27 C 0.02 0.19 7.26 72.14 0.52 0.71 16 28 O -0.32 -5.74 10.42 -83.59 -0.87 -6.61 16 29 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 30 H 0.04 1.63 7.88 -2.39 -0.02 1.62 16 31 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.06 3.09 6.78 -2.39 -0.02 3.07 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.41 16.36 8.00 -92.71 -0.74 15.62 16 36 H 0.43 9.72 8.29 -92.70 -0.77 8.95 16 37 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.12 4.20 6.32 -2.91 -0.02 4.18 16 40 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -69.07 359.71 1.14 -67.92 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.43 Total: 31.51 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 4.98 Total: 14.83 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -3.61 Total: -100.33 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -1.82 Total: -58.02 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -69.07 1.14 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275748406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.041 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds