Wall clock time and date at job start Tue Mar 31 2020 17:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 H 1.09001 * 109.47439 * 306.76401 * 3 2 1 5 5 C 1.50705 * 109.47071 * 186.76111 * 3 2 1 6 6 H 1.07997 * 120.00147 * 275.01074 * 5 3 2 7 7 C 1.37882 * 119.99770 * 95.01473 * 5 3 2 8 8 N 1.31508 * 119.99798 * 184.20066 * 7 5 3 9 9 Si 1.86797 * 119.99976 * 4.20383 * 7 5 3 10 10 H 1.48499 * 109.47344 * 84.69361 * 9 7 5 11 11 H 1.48504 * 109.47227 * 204.69704 * 9 7 5 12 12 H 1.48508 * 109.47334 * 324.69617 * 9 7 5 13 13 N 1.46501 * 109.46980 * 66.76501 * 3 2 1 14 14 C 1.34775 * 119.99825 * 275.27707 * 13 3 2 15 15 O 1.21362 * 120.00105 * 359.71994 * 14 13 3 16 16 C 1.49330 * 120.00032 * 179.72606 * 14 13 3 17 17 O 1.21393 * 120.00009 * 359.97438 * 16 14 13 18 18 N 1.34780 * 120.00160 * 179.97438 * 16 14 13 19 19 C 1.39892 * 120.00155 * 185.22748 * 18 16 14 20 20 C 1.38872 * 120.03323 * 20.07940 * 19 18 16 21 21 C 1.38132 * 120.02153 * 179.97438 * 20 19 18 22 22 C 1.38246 * 120.18653 * 0.05652 * 21 20 19 23 23 C 1.38806 * 120.21139 * 359.96769 * 22 21 20 24 24 C 1.38803 * 119.86349 * 359.69918 * 23 22 21 25 25 O 1.36160 * 120.81989 * 180.12897 * 24 23 22 26 26 C 1.43180 * 116.75335 * 343.10206 * 25 24 23 27 27 C 1.53469 * 108.22618 * 45.99809 * 26 25 24 28 28 O 1.36115 * 119.36105 * 179.80172 * 23 22 21 29 29 H 1.08992 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46550 * 299.99749 * 1 2 3 31 31 H 1.09007 * 109.46807 * 59.99509 * 1 2 3 32 32 H 1.09005 * 109.46739 * 239.99973 * 2 1 3 33 33 H 1.08995 * 109.47137 * 120.00537 * 2 1 3 34 34 H 0.97004 * 119.99736 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00187 * 94.99451 * 13 3 2 36 36 H 0.96994 * 120.00185 * 5.23702 * 18 16 14 37 37 H 1.08000 * 119.98776 * 359.96296 * 20 19 18 38 38 H 1.08003 * 119.90744 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.89938 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.71384 * 286.31083 * 26 25 24 41 41 H 1.09006 * 109.70938 * 165.67831 * 26 25 24 42 42 H 1.09005 * 109.70703 * 180.63475 * 27 26 25 43 43 H 1.08994 * 109.70683 * 60.01182 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5813 1.9901 -0.8233 5 6 3.5378 1.4457 -0.1673 6 1 4.1777 1.3287 0.6948 7 6 4.0911 1.5982 -1.4210 8 7 5.3943 1.5184 -1.5787 9 14 2.9897 1.9181 -2.8954 10 1 2.7039 3.3720 -2.9936 11 1 3.6740 1.4634 -4.1324 12 1 1.7154 1.1731 -2.7323 13 7 1.6891 2.0845 1.2692 14 6 0.4738 2.6451 1.4274 15 8 -0.3281 2.6225 0.5166 16 6 0.1138 3.2941 2.7232 17 8 0.9157 3.3164 3.6343 18 7 -1.1015 3.8552 2.8812 19 6 -1.4004 4.5581 4.0532 20 6 -0.3744 5.0401 4.8554 21 6 -0.6698 5.7345 6.0124 22 6 -1.9858 5.9510 6.3763 23 6 -3.0181 5.4726 5.5812 24 6 -2.7275 4.7802 4.4139 25 8 -3.7248 4.3046 3.6182 26 6 -5.0288 4.2158 4.2027 27 6 -5.3103 5.5266 4.9497 28 8 -4.3075 5.6921 5.9581 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.7835 1.6253 -2.4608 35 1 2.3300 2.1025 1.9972 36 1 -1.7688 3.7716 2.1823 37 1 0.6548 4.8718 4.5747 38 1 0.1296 6.1090 6.6347 39 1 -2.2115 6.4942 7.2821 40 1 -5.0624 3.3799 4.9014 41 1 -5.7735 4.0715 3.4199 42 1 -6.2951 5.4805 5.4147 43 1 -5.2714 6.3629 4.2519 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275829156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:19 Heat of formation + Delta-G solvation = -106.363923 kcal Electronic energy + Delta-G solvation = -28792.881231 eV Core-core repulsion = 24611.408028 eV Total energy + Delta-G solvation = -4181.473203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67332 -40.56760 -38.81463 -37.56118 -37.47217 -35.59909 -34.58841 -32.42711 -31.57156 -31.46048 -29.81833 -28.67245 -27.78523 -25.20825 -24.95654 -22.98604 -22.23847 -21.60147 -20.28484 -19.71035 -19.00740 -18.74930 -17.93243 -17.36409 -16.69253 -16.38686 -15.96361 -15.64714 -15.46569 -15.34298 -15.09228 -14.85946 -14.60743 -14.42815 -14.11087 -13.83995 -13.52062 -13.45479 -12.84500 -12.50721 -12.40080 -12.15288 -12.02955 -11.93024 -11.75457 -11.42044 -11.23510 -11.01519 -10.90391 -10.77637 -10.71628 -10.44832 -10.06525 -9.91445 -9.30738 -9.14549 -8.78345 -8.33884 -8.25679 -8.05937 -6.29762 -4.34756 0.89049 1.12757 1.82878 2.47613 2.74902 2.89960 3.21679 3.29644 3.35091 3.43770 3.68478 3.85998 3.99989 4.25953 4.44878 4.47103 4.53628 4.79452 4.84669 4.92084 5.08674 5.11894 5.15571 5.25446 5.46406 5.76214 5.79676 5.95468 5.99080 6.12385 6.16480 6.32574 6.50954 6.56303 6.57055 6.67493 6.79132 6.86781 7.02493 7.13421 7.18260 7.21726 7.37901 7.72149 8.01440 8.38483 8.56107 8.73752 9.30103 10.81562 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002775 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.182775 B =10086.674099 C =10771.500323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.234 3.766 4 H 0.055 0.945 5 C -0.534 4.534 6 H 0.082 0.918 7 C 0.084 3.916 8 N -0.883 5.883 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.258 1.258 13 N -0.661 5.661 14 C 0.494 3.506 15 O -0.532 6.532 16 C 0.507 3.493 17 O -0.500 6.500 18 N -0.638 5.638 19 C 0.165 3.835 20 C -0.139 4.139 21 C -0.090 4.090 22 C -0.136 4.136 23 C 0.069 3.931 24 C 0.015 3.985 25 O -0.308 6.308 26 C 0.024 3.976 27 C 0.020 3.980 28 O -0.306 6.306 29 H 0.034 0.966 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.269 0.731 35 H 0.406 0.594 36 H 0.427 0.573 37 H 0.166 0.834 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.988 7.563 13.549 25.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.133 3.867 4 H 0.073 0.927 5 C -0.571 4.571 6 H 0.100 0.900 7 C -0.122 4.122 8 N -0.519 5.519 9 Si 0.698 3.302 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.182 1.182 13 N -0.311 5.311 14 C 0.273 3.727 15 O -0.411 6.411 16 C 0.290 3.710 17 O -0.374 6.374 18 N -0.283 5.283 19 C 0.069 3.931 20 C -0.159 4.159 21 C -0.109 4.109 22 C -0.156 4.156 23 C 0.024 3.976 24 C -0.032 4.032 25 O -0.223 6.223 26 C -0.052 4.052 27 C -0.055 4.055 28 O -0.221 6.221 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.266 0.734 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.802 7.494 13.289 24.998 hybrid contribution -0.828 0.130 -0.844 1.190 sum -20.630 7.624 12.445 25.271 Atomic orbital electron populations 1.21932 0.97396 0.99229 1.01892 1.22100 0.93678 0.98995 1.01769 1.19383 0.96281 0.89440 0.81595 0.92679 1.20980 0.88397 1.52035 0.95732 0.89971 1.24936 0.94954 0.93529 0.98756 1.69872 1.10327 1.47658 1.24039 0.86922 0.81408 0.79722 0.82114 1.19747 1.21044 1.18241 1.46646 1.12876 1.52717 1.18852 1.19684 0.84614 0.81397 0.87005 1.90740 1.49577 1.59143 1.41634 1.20957 0.81692 0.78820 0.89500 1.90653 1.49228 1.55962 1.41554 1.43093 1.15896 1.50797 1.18508 1.17125 0.89849 0.96618 0.89552 1.21611 1.00505 0.98670 0.95095 1.20871 0.95468 0.98019 0.96493 1.20445 0.90560 1.03265 1.01292 1.18565 0.84812 0.99283 0.94965 1.18389 0.87515 1.03034 0.94224 1.86250 1.16742 1.81368 1.37963 1.23619 0.83745 0.97817 1.00011 1.23635 0.92058 0.98035 0.91808 1.86314 1.12798 1.86076 1.36862 0.94722 0.93407 0.92939 0.91533 0.92642 0.92066 0.75795 0.73443 0.81715 0.84455 0.84795 0.90453 0.85946 0.86085 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.55 37.16 0.32 -2.47 16 2 C -0.13 -2.63 5.58 -26.73 -0.15 -2.78 16 3 C 0.23 5.36 1.88 -69.08 -0.13 5.23 16 4 H 0.06 1.35 4.76 -51.93 -0.25 1.10 16 5 C -0.53 -13.99 9.04 -34.44 -0.31 -14.30 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.88 -25.51 13.96 55.43 0.77 -24.73 16 9 Si 0.87 20.80 26.97 -169.99 -4.58 16.22 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.26 -5.97 6.85 56.52 0.39 -5.58 16 13 N -0.66 -13.33 5.03 -55.40 -0.28 -13.61 16 14 C 0.49 9.33 6.53 -11.64 -0.08 9.26 16 15 O -0.53 -10.79 13.61 5.49 0.07 -10.72 16 16 C 0.51 8.45 7.73 -11.64 -0.09 8.36 16 17 O -0.50 -8.70 13.38 5.46 0.07 -8.63 16 18 N -0.64 -9.36 5.30 -10.18 -0.05 -9.41 16 19 C 0.16 2.30 6.51 -83.55 -0.54 1.75 16 20 C -0.14 -1.84 8.78 -39.39 -0.35 -2.18 16 21 C -0.09 -0.96 10.03 -39.62 -0.40 -1.36 16 22 C -0.14 -1.43 9.96 -39.37 -0.39 -1.82 16 23 C 0.07 0.81 6.49 -39.16 -0.25 0.55 16 24 C 0.02 0.20 6.51 -38.98 -0.25 -0.06 16 25 O -0.31 -3.53 9.72 -33.09 -0.32 -3.85 16 26 C 0.02 0.17 7.27 37.40 0.27 0.44 16 27 C 0.02 0.13 7.26 37.40 0.27 0.41 16 28 O -0.31 -3.13 10.42 -32.95 -0.34 -3.47 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.90 5.59 -51.93 -0.29 0.61 16 31 H 0.05 1.04 7.94 -51.92 -0.41 0.63 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.41 7.78 8.06 -40.82 -0.33 7.45 16 36 H 0.43 5.95 7.68 -40.82 -0.31 5.64 16 37 H 0.17 2.37 5.43 -52.49 -0.28 2.09 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -31.02 355.98 -6.73 -37.75 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.25 Total: 11.87 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.18 Total: 3.21 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.44 Total: -47.75 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.52 Total: -26.66 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.58 Total: 16.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.02 -6.73 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275829156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.613 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds