Wall clock time and date at job start Tue Mar 31 2020 17:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47287 * 2 1 4 4 H 1.09001 * 109.47439 * 306.76401 * 3 2 1 5 5 C 1.50705 * 109.47071 * 186.76111 * 3 2 1 6 6 H 1.07997 * 120.00147 * 275.01074 * 5 3 2 7 7 C 1.37882 * 119.99770 * 95.01473 * 5 3 2 8 8 N 1.31508 * 119.99798 * 184.20066 * 7 5 3 9 9 Si 1.86797 * 119.99976 * 4.20383 * 7 5 3 10 10 H 1.48499 * 109.47344 * 84.69361 * 9 7 5 11 11 H 1.48504 * 109.47227 * 204.69704 * 9 7 5 12 12 H 1.48508 * 109.47334 * 324.69617 * 9 7 5 13 13 N 1.46501 * 109.46980 * 66.76501 * 3 2 1 14 14 C 1.34775 * 119.99825 * 275.27707 * 13 3 2 15 15 O 1.21362 * 120.00105 * 359.71994 * 14 13 3 16 16 C 1.49330 * 120.00032 * 179.72606 * 14 13 3 17 17 O 1.21393 * 120.00009 * 359.97438 * 16 14 13 18 18 N 1.34780 * 120.00160 * 179.97438 * 16 14 13 19 19 C 1.39892 * 120.00155 * 185.22748 * 18 16 14 20 20 C 1.38872 * 120.03323 * 20.07940 * 19 18 16 21 21 C 1.38132 * 120.02153 * 179.97438 * 20 19 18 22 22 C 1.38246 * 120.18653 * 0.05652 * 21 20 19 23 23 C 1.38806 * 120.21139 * 359.96769 * 22 21 20 24 24 C 1.38803 * 119.86349 * 359.69918 * 23 22 21 25 25 O 1.36160 * 120.81989 * 180.12897 * 24 23 22 26 26 C 1.43180 * 116.75335 * 343.10206 * 25 24 23 27 27 C 1.53469 * 108.22618 * 45.99809 * 26 25 24 28 28 O 1.36115 * 119.36105 * 179.80172 * 23 22 21 29 29 H 1.08992 * 109.47181 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46550 * 299.99749 * 1 2 3 31 31 H 1.09007 * 109.46807 * 59.99509 * 1 2 3 32 32 H 1.09005 * 109.46739 * 239.99973 * 2 1 3 33 33 H 1.08995 * 109.47137 * 120.00537 * 2 1 3 34 34 H 0.97004 * 119.99736 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00187 * 94.99451 * 13 3 2 36 36 H 0.96994 * 120.00185 * 5.23702 * 18 16 14 37 37 H 1.08000 * 119.98776 * 359.96296 * 20 19 18 38 38 H 1.08003 * 119.90744 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.89938 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.71384 * 286.31083 * 26 25 24 41 41 H 1.09006 * 109.70938 * 165.67831 * 26 25 24 42 42 H 1.09005 * 109.70703 * 180.63475 * 27 26 25 43 43 H 1.08994 * 109.70683 * 60.01182 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5813 1.9901 -0.8233 5 6 3.5378 1.4457 -0.1673 6 1 4.1777 1.3287 0.6948 7 6 4.0911 1.5982 -1.4210 8 7 5.3943 1.5184 -1.5787 9 14 2.9897 1.9181 -2.8954 10 1 2.7039 3.3720 -2.9936 11 1 3.6740 1.4634 -4.1324 12 1 1.7154 1.1731 -2.7323 13 7 1.6891 2.0845 1.2692 14 6 0.4738 2.6451 1.4274 15 8 -0.3281 2.6225 0.5166 16 6 0.1138 3.2941 2.7232 17 8 0.9157 3.3164 3.6343 18 7 -1.1015 3.8552 2.8812 19 6 -1.4004 4.5581 4.0532 20 6 -0.3744 5.0401 4.8554 21 6 -0.6698 5.7345 6.0124 22 6 -1.9858 5.9510 6.3763 23 6 -3.0181 5.4726 5.5812 24 6 -2.7275 4.7802 4.4139 25 8 -3.7248 4.3046 3.6182 26 6 -5.0288 4.2158 4.2027 27 6 -5.3103 5.5266 4.9497 28 8 -4.3075 5.6921 5.9581 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.7835 1.6253 -2.4608 35 1 2.3300 2.1025 1.9972 36 1 -1.7688 3.7716 2.1823 37 1 0.6548 4.8718 4.5747 38 1 0.1296 6.1090 6.6347 39 1 -2.2115 6.4942 7.2821 40 1 -5.0624 3.3799 4.9014 41 1 -5.7735 4.0715 3.4199 42 1 -6.2951 5.4805 5.4147 43 1 -5.2714 6.3629 4.2519 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275829156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:18 Heat of formation + Delta-G solvation = -128.724443 kcal Electronic energy + Delta-G solvation = -28793.850856 eV Core-core repulsion = 24611.408028 eV Total energy + Delta-G solvation = -4182.442828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.59115 -41.78827 -40.20149 -38.50308 -38.33575 -37.25284 -35.79019 -34.42003 -33.18117 -32.17637 -30.81780 -29.61402 -29.43441 -26.47847 -25.80828 -24.67976 -23.42803 -22.45765 -21.66477 -21.29948 -20.25103 -19.71324 -18.88845 -18.79598 -18.03107 -17.66259 -17.26069 -16.92629 -16.75964 -16.31331 -16.12770 -15.96412 -15.71142 -15.52160 -15.33200 -15.04154 -14.78111 -14.74414 -14.24854 -13.98736 -13.82328 -13.71953 -13.41019 -12.98290 -12.93513 -12.66247 -12.62894 -12.49326 -12.28588 -12.04623 -11.86813 -11.73110 -11.64230 -11.38631 -11.25854 -10.87080 -10.56262 -9.94130 -9.20397 -9.04099 -8.39947 -6.48120 -0.18585 0.24149 0.57682 1.18602 1.33093 1.35568 1.45364 1.96408 2.09768 2.22292 2.26727 2.57862 2.68768 2.99608 3.31652 3.43663 3.68951 3.89317 3.95587 4.18070 4.22473 4.27483 4.31424 4.38517 4.42056 4.48484 4.60530 4.63767 4.76050 4.83824 4.96979 5.08442 5.14657 5.21276 5.22769 5.32254 5.43423 5.50479 5.58578 5.65654 5.74287 5.92102 6.08781 6.30186 6.48420 6.57295 6.70416 6.98685 7.20926 8.74980 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002775 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.182775 B =10086.674099 C =10771.500323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.240 3.760 4 H 0.043 0.957 5 C -0.533 4.533 6 H 0.054 0.946 7 C 0.034 3.966 8 N -0.928 5.928 9 Si 0.927 3.073 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.246 1.246 13 N -0.667 5.667 14 C 0.498 3.502 15 O -0.544 6.544 16 C 0.513 3.487 17 O -0.511 6.511 18 N -0.625 5.625 19 C 0.135 3.865 20 C -0.154 4.154 21 C -0.085 4.085 22 C -0.130 4.130 23 C 0.063 3.937 24 C 0.013 3.987 25 O -0.326 6.326 26 C 0.015 3.985 27 C 0.016 3.984 28 O -0.314 6.314 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.272 0.728 35 H 0.410 0.590 36 H 0.430 0.570 37 H 0.150 0.850 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.079 0.921 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.037 8.203 14.546 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C 0.138 3.862 4 H 0.061 0.939 5 C -0.571 4.571 6 H 0.072 0.928 7 C -0.167 4.167 8 N -0.566 5.566 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.169 1.169 13 N -0.317 5.317 14 C 0.278 3.722 15 O -0.423 6.423 16 C 0.296 3.704 17 O -0.387 6.387 18 N -0.271 5.271 19 C 0.040 3.960 20 C -0.174 4.174 21 C -0.104 4.104 22 C -0.149 4.149 23 C 0.017 3.983 24 C -0.034 4.034 25 O -0.241 6.241 26 C -0.060 4.060 27 C -0.059 4.059 28 O -0.229 6.229 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.268 0.732 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.177 0.823 40 H 0.097 0.903 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.905 8.148 14.314 28.212 hybrid contribution -0.017 -0.009 -1.006 1.006 sum -22.922 8.138 13.308 27.726 Atomic orbital electron populations 1.21820 0.95515 1.00846 1.01312 1.22021 0.95280 0.97309 1.01807 1.19161 0.93926 0.90796 0.82336 0.93908 1.21161 0.90115 1.51029 0.94783 0.92808 1.25650 0.95990 0.93599 1.01459 1.69982 1.12040 1.49733 1.24838 0.86048 0.80223 0.79514 0.79167 1.19823 1.20326 1.16934 1.46367 1.13790 1.53391 1.18144 1.19930 0.83784 0.80683 0.87771 1.90725 1.49780 1.59383 1.42394 1.20346 0.82459 0.79247 0.88345 1.90664 1.49779 1.56715 1.41511 1.42915 1.14912 1.50164 1.19060 1.17315 0.90919 0.98105 0.89673 1.21602 0.99693 0.99832 0.96249 1.21150 0.96576 0.96992 0.95671 1.20804 0.90134 1.02295 1.01677 1.18775 0.85933 0.98969 0.94600 1.18442 0.87387 1.02992 0.94621 1.86223 1.18019 1.81247 1.38621 1.23986 0.82454 0.98271 1.01239 1.23964 0.92560 0.97684 0.91657 1.86306 1.12539 1.85887 1.38155 0.92018 0.93589 0.93844 0.92125 0.92040 0.91884 0.75369 0.73173 0.83304 0.81789 0.82267 0.90302 0.82988 0.82556 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.96 8.55 71.98 0.62 -4.35 16 2 C -0.13 -5.12 5.58 30.59 0.17 -4.95 16 3 C 0.24 11.00 1.88 44.25 0.08 11.08 16 4 H 0.04 2.08 4.76 -2.39 -0.01 2.07 16 5 C -0.53 -28.57 9.04 25.60 0.23 -28.34 16 6 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 7 C 0.03 1.89 5.47 84.66 0.46 2.35 16 8 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 9 Si 0.93 43.03 26.97 68.60 1.85 44.88 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.25 -10.83 6.85 99.48 0.68 -10.14 16 13 N -0.67 -27.09 5.03 -447.55 -2.25 -29.34 16 14 C 0.50 18.77 6.53 87.23 0.57 19.34 16 15 O -0.54 -21.72 13.61 -3.28 -0.04 -21.77 16 16 C 0.51 17.16 7.73 87.23 0.67 17.84 16 17 O -0.51 -18.01 13.38 -3.38 -0.05 -18.06 16 18 N -0.63 -18.27 5.30 -304.46 -1.61 -19.88 16 19 C 0.14 3.71 6.51 38.26 0.25 3.96 16 20 C -0.15 -4.01 8.78 22.40 0.20 -3.82 16 21 C -0.09 -1.68 10.03 22.25 0.22 -1.46 16 22 C -0.13 -2.42 9.96 22.41 0.22 -2.20 16 23 C 0.06 1.35 6.49 22.54 0.15 1.50 16 24 C 0.01 0.31 6.51 22.66 0.15 0.46 16 25 O -0.33 -7.00 9.72 -83.09 -0.81 -7.81 16 26 C 0.01 0.18 7.27 72.14 0.52 0.70 16 27 C 0.02 0.16 7.26 72.14 0.52 0.69 16 28 O -0.31 -5.60 10.42 -82.59 -0.86 -6.46 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.66 5.59 -2.39 -0.01 1.65 16 31 H 0.04 1.63 7.94 -2.38 -0.02 1.61 16 32 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 33 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.41 16.06 8.06 -92.71 -0.75 15.31 16 36 H 0.43 11.85 7.68 -92.71 -0.71 11.14 16 37 H 0.15 4.36 5.43 -2.91 -0.02 4.34 16 38 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.15 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.16 0.47 8.14 -2.38 -0.02 0.45 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -67.68 355.98 1.17 -66.52 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.40 Total: 33.74 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.04 Total: 12.81 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.57 Total: -103.85 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -1.76 Total: -54.09 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.85 Total: 44.88 kcal Total: -67.68 1.17 -66.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275829156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.209 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds