Wall clock time and date at job start Tue Mar 31 2020 17:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00161 * 2 1 4 4 N 1.46500 * 109.47079 * 235.00287 * 3 2 1 5 5 C 1.46500 * 120.00423 * 91.16123 * 4 3 2 6 6 C 1.50702 * 109.47049 * 85.16167 * 5 4 3 7 7 H 1.07995 * 119.99826 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99824 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00019 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 119.99877 * 0.02562 * 8 6 5 11 11 H 1.48489 * 109.47424 * 90.00334 * 10 8 6 12 12 H 1.48504 * 109.46977 * 210.00001 * 10 8 6 13 13 H 1.48497 * 109.47223 * 329.99768 * 10 8 6 14 14 C 1.34783 * 119.99537 * 271.15786 * 4 3 2 15 15 O 1.21277 * 119.99789 * 5.10323 * 14 4 3 16 16 C 1.50697 * 120.00084 * 185.09505 * 14 4 3 17 17 H 1.09005 * 110.85520 * 29.25396 * 16 14 4 18 18 C 1.54634 * 110.97215 * 265.46480 * 16 14 4 19 19 C 1.51343 * 104.16318 * 217.10820 * 18 16 14 20 20 O 1.21280 * 124.92605 * 196.22530 * 19 18 16 21 21 N 1.34418 * 110.13188 * 16.19735 * 19 18 16 22 22 C 1.46499 * 124.34960 * 180.45910 * 21 19 18 23 23 C 1.53007 * 109.47335 * 269.97663 * 22 21 19 24 24 F 1.39898 * 109.46874 * 59.99962 * 23 22 21 25 25 F 1.39896 * 109.47509 * 179.97438 * 23 22 21 26 26 F 1.39901 * 109.46860 * 300.00399 * 23 22 21 27 27 C 1.46766 * 111.30097 * 0.43996 * 21 19 18 28 28 H 1.07998 * 120.00068 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99617 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00444 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46675 * 354.99500 * 3 2 1 32 32 H 1.08992 * 109.47646 * 114.99437 * 3 2 1 33 33 H 1.09005 * 109.46853 * 205.16162 * 5 4 3 34 34 H 1.08997 * 109.46715 * 325.15873 * 5 4 3 35 35 H 0.96999 * 119.99414 * 179.97438 * 9 8 6 36 36 H 1.08997 * 110.48275 * 335.75833 * 18 16 14 37 37 H 1.08997 * 110.48920 * 98.40576 * 18 16 14 38 38 H 1.08999 * 109.47221 * 29.97968 * 22 21 19 39 39 H 1.09004 * 109.47273 * 149.98206 * 22 21 19 40 40 H 1.09001 * 110.24289 * 223.97870 * 27 21 19 41 41 H 1.09003 * 110.24445 * 101.97994 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 -1.1315 5 6 2.5670 1.8883 -2.4177 6 6 2.7659 3.3821 -2.4097 7 1 3.1694 3.8684 -1.5339 8 6 2.4317 4.1280 -3.5200 9 7 2.6048 5.4317 -3.5129 10 14 1.7317 3.2870 -5.0341 11 1 0.2513 3.2345 -4.9312 12 1 2.1167 4.0517 -6.2475 13 1 2.2707 1.9065 -5.1272 14 6 4.2423 0.8447 -0.9890 15 8 4.5666 0.3006 0.0453 16 6 5.2354 0.9757 -2.1149 17 1 5.0285 1.8629 -2.7134 18 6 5.2451 -0.2957 -2.9950 19 6 6.6999 -0.4735 -3.3726 20 8 7.1023 -1.1801 -4.2724 21 7 7.4809 0.2658 -2.5662 22 6 8.9411 0.3327 -2.6639 23 6 9.5614 -0.7560 -1.7859 24 9 9.1221 -2.0114 -2.2196 25 9 10.9558 -0.6925 -1.8796 26 9 9.1734 -0.5600 -0.4561 27 6 6.6828 0.9978 -1.5757 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3585 2.1317 -0.0897 32 1 2.6213 1.4027 0.9313 33 1 3.1597 1.4471 -3.2191 34 1 1.5128 1.6629 -2.5792 35 1 2.3700 5.9564 -4.2942 36 1 4.8908 -1.1557 -2.4267 37 1 4.6345 -0.1479 -3.8857 38 1 9.2433 0.1801 -3.7000 39 1 9.2834 1.3109 -2.3259 40 1 7.0377 2.0248 -1.4898 41 1 6.7324 0.4986 -0.6079 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292319071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:21 Heat of formation + Delta-G solvation = -194.624842 kcal Electronic energy + Delta-G solvation = -29989.786742 eV Core-core repulsion = 25262.629517 eV Total energy + Delta-G solvation = -4727.157224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.18714 -47.73874 -47.63992 -40.82767 -39.15341 -36.48790 -35.67810 -33.94470 -33.18711 -32.31139 -29.08527 -28.28871 -27.77341 -25.99563 -23.82481 -23.04998 -22.10461 -20.18931 -19.76469 -18.69641 -18.62663 -18.36240 -17.90457 -17.15728 -17.08332 -16.47614 -15.79236 -15.66703 -15.15055 -14.75117 -14.60125 -14.56749 -14.36966 -14.16515 -14.09801 -13.82518 -13.81609 -13.65992 -13.40648 -13.20860 -13.10705 -12.80246 -12.71552 -12.45297 -12.20303 -11.99776 -11.59020 -11.46532 -11.30821 -11.09441 -10.98588 -10.78423 -10.33944 -10.08143 -9.78044 -9.47424 -9.13981 -9.04744 -8.84737 -7.98808 -6.34161 -4.37660 2.22594 2.39350 2.45242 2.79892 2.97676 3.09672 3.16747 3.20471 3.64474 3.65472 3.81524 4.11711 4.15632 4.27326 4.52659 4.80535 4.84379 4.91206 4.97294 5.02194 5.21675 5.33788 5.43707 5.47724 5.63515 5.75419 5.83730 6.04811 6.09758 6.12091 6.20427 6.29989 6.52167 6.76582 6.79492 6.85998 7.15802 7.30434 7.89973 7.94712 8.24676 8.60147 8.72403 9.24524 10.77914 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.003880 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.655014 B = 7215.228143 C = 8325.391415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.144 3.856 4 N -0.579 5.579 5 C 0.205 3.795 6 C -0.547 4.547 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.887 5.887 10 Si 0.868 3.132 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.530 3.470 15 O -0.560 6.560 16 C -0.124 4.124 17 H 0.135 0.865 18 C -0.137 4.137 19 C 0.529 3.471 20 O -0.518 6.518 21 N -0.619 5.619 22 C 0.089 3.911 23 C 0.431 3.569 24 F -0.176 7.176 25 F -0.183 7.183 26 F -0.179 7.179 27 C 0.114 3.886 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.268 0.732 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -8.573 2.656 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.177 4.177 3 C 0.022 3.978 4 N -0.308 5.308 5 C 0.084 3.916 6 C -0.585 4.585 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.524 5.524 10 Si 0.695 3.305 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.317 3.683 15 O -0.440 6.440 16 C -0.146 4.146 17 H 0.153 0.847 18 C -0.177 4.177 19 C 0.318 3.682 20 O -0.393 6.393 21 N -0.354 5.354 22 C -0.036 4.036 23 C 0.375 3.625 24 F -0.158 7.158 25 F -0.165 7.165 26 F -0.161 7.161 27 C -0.008 4.008 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.109 0.891 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.786 -9.049 2.591 12.215 hybrid contribution -0.365 -0.312 -0.736 0.879 sum 7.421 -9.361 1.854 12.089 Atomic orbital electron populations 1.23818 0.95818 1.01691 1.01592 1.23387 0.96056 0.99336 0.98940 1.20484 0.92285 0.94973 0.90081 1.47872 1.11079 1.58181 1.13672 1.19901 0.96079 0.95278 0.80298 1.21345 1.44957 0.89605 1.02615 0.90165 1.24864 0.94676 0.94650 0.98306 1.69880 1.46938 1.05232 1.30324 0.86973 0.80270 0.80216 0.83086 1.19798 1.20783 1.18757 1.19834 0.82653 0.78063 0.87755 1.90639 1.78675 1.44672 1.30046 1.22309 0.93710 1.01230 0.97318 0.84715 1.22285 0.94274 0.98973 1.02205 1.20992 0.89014 0.77831 0.80367 1.90736 1.79411 1.38771 1.30380 1.48107 1.04239 1.48012 1.35002 1.22455 0.81313 0.97932 1.01930 1.21370 0.76419 0.84315 0.80412 1.93233 1.89142 1.44078 1.89323 1.93183 1.30716 1.96480 1.96127 1.93212 1.90679 1.95024 1.37161 1.22235 0.88625 0.97792 0.92135 0.88323 0.88835 0.87668 0.89300 0.89877 0.94572 0.94991 0.92208 0.87182 0.86771 0.85479 0.85437 0.89057 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 14.32 29.01 0.42 -2.02 16 2 C -0.16 -2.29 9.84 -36.02 -0.35 -2.65 16 3 C 0.14 2.36 5.81 -5.19 -0.03 2.33 16 4 N -0.58 -10.41 2.44 -176.43 -0.43 -10.84 16 5 C 0.21 4.05 3.82 -5.19 -0.02 4.03 16 6 C -0.55 -13.02 9.58 -34.44 -0.33 -13.35 16 7 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 8 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.89 -24.17 13.96 55.43 0.77 -23.40 16 10 Si 0.87 18.57 27.47 -169.99 -4.67 13.90 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 13 H -0.26 -5.23 6.54 56.52 0.37 -4.86 16 14 C 0.53 9.19 6.73 -10.98 -0.07 9.11 16 15 O -0.56 -10.63 15.37 5.56 0.09 -10.54 16 16 C -0.12 -1.85 2.51 -90.14 -0.23 -2.08 16 17 H 0.13 2.16 6.54 -51.93 -0.34 1.82 16 18 C -0.14 -1.91 6.18 -26.71 -0.17 -2.08 16 19 C 0.53 7.86 7.72 -10.83 -0.08 7.78 16 20 O -0.52 -9.06 17.59 5.56 0.10 -8.96 16 21 N -0.62 -7.85 2.81 -172.38 -0.48 -8.33 16 22 C 0.09 0.88 5.91 -4.04 -0.02 0.86 16 23 C 0.43 4.97 3.29 37.16 0.12 5.09 16 24 F -0.18 -2.49 16.96 2.25 0.04 -2.45 16 25 F -0.18 -1.99 17.32 2.25 0.04 -1.95 16 26 F -0.18 -2.25 17.09 2.25 0.04 -2.22 16 27 C 0.11 1.48 6.73 -3.12 -0.02 1.46 16 28 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 29 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.09 1.46 7.71 -51.92 -0.40 1.06 16 32 H 0.08 1.37 7.53 -51.93 -0.39 0.98 16 33 H 0.04 0.68 5.01 -51.93 -0.26 0.42 16 34 H 0.03 0.63 7.53 -51.93 -0.39 0.24 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.11 1.50 7.89 -51.93 -0.41 1.09 16 37 H 0.11 1.52 7.79 -51.93 -0.40 1.12 16 38 H 0.13 1.16 7.93 -51.93 -0.41 0.75 16 39 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.37 6.90 -51.93 -0.36 1.01 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -29.67 361.13 -5.02 -34.68 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.06 Total: 4.30 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -0.89 Total: 10.38 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.14 Total: -42.57 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.18 Total: -19.51 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.12 Total: -6.62 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.67 Total: 13.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.67 -5.02 -34.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292319071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.941 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds