Wall clock time and date at job start Tue Mar 31 2020 17:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 119.99980 * 2 1 4 4 N 1.46504 * 109.47147 * 125.00553 * 3 2 1 5 5 C 1.46502 * 119.99809 * 266.52253 * 4 3 2 6 6 C 1.50702 * 109.47084 * 84.34401 * 5 4 3 7 7 H 1.07994 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99829 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00243 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00411 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46985 * 90.00055 * 10 8 6 12 12 H 1.48491 * 109.47294 * 210.00688 * 10 8 6 13 13 H 1.48497 * 109.46689 * 330.00564 * 10 8 6 14 14 C 1.34769 * 120.00196 * 86.51896 * 4 3 2 15 15 O 1.21280 * 120.00115 * 5.15672 * 14 4 3 16 16 C 1.50706 * 120.00243 * 185.15548 * 14 4 3 17 17 H 1.09001 * 109.39579 * 336.54793 * 16 14 4 18 18 C 1.53071 * 109.40252 * 216.81074 * 16 14 4 19 19 C 1.53365 * 108.40984 * 288.77889 * 18 16 14 20 20 C 1.52914 * 108.66223 * 292.44159 * 19 18 16 21 21 H 1.08992 * 109.30646 * 290.45589 * 20 19 18 22 22 C 1.53002 * 109.13299 * 170.96952 * 20 19 18 23 23 F 1.39898 * 109.47139 * 299.06804 * 22 20 19 24 24 F 1.39897 * 109.46929 * 59.07303 * 22 20 19 25 25 F 1.39906 * 109.46843 * 179.06819 * 22 20 19 26 26 N 1.45754 * 110.48641 * 50.76848 * 20 19 18 27 27 C 1.33362 * 124.10636 * 340.94554 * 26 20 19 28 28 O 1.21283 * 118.24466 * 182.20360 * 27 26 20 29 29 H 1.08003 * 120.00338 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00125 * 359.71615 * 1 2 3 31 31 H 1.08000 * 119.99869 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47643 * 245.00375 * 3 2 1 33 33 H 1.08999 * 109.47447 * 5.00621 * 3 2 1 34 34 H 1.08995 * 109.47239 * 204.34372 * 5 4 3 35 35 H 1.08998 * 109.47181 * 324.34271 * 5 4 3 36 36 H 0.96996 * 120.00498 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.67186 * 48.49954 * 18 16 14 38 38 H 1.08997 * 109.67634 * 169.03260 * 18 16 14 39 39 H 1.09004 * 109.59764 * 172.69488 * 19 18 16 40 40 H 1.09001 * 109.75580 * 52.28667 * 19 18 16 41 41 H 0.97006 * 117.94798 * 160.92390 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5841 1.9340 2.4025 6 6 1.8260 0.9187 3.2182 7 1 1.6650 -0.0756 2.8285 8 6 1.3369 1.2594 4.4614 9 7 0.6748 0.3735 5.1731 10 14 1.6147 2.9794 5.1352 11 1 0.4901 3.8588 4.7263 12 1 1.6869 2.9248 6.6173 13 1 2.8881 3.5220 4.5973 14 6 4.2265 0.8024 1.0029 15 8 4.5994 0.3884 -0.0744 16 6 5.1416 0.7247 2.1977 17 1 4.8454 1.4759 2.9299 18 6 6.5820 0.9908 1.7532 19 6 7.0709 -0.2181 0.9459 20 6 7.1892 -1.4186 1.8856 21 1 8.0187 -1.2570 2.5739 22 6 7.4560 -2.6781 1.0589 23 9 6.3888 -2.8943 0.1807 24 9 8.6367 -2.5138 0.3267 25 9 7.5867 -3.7779 1.9138 26 7 5.9587 -1.5937 2.6468 27 6 5.0412 -0.6405 2.8150 28 8 4.0745 -0.8895 3.5037 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0046 31 1 1.8499 -0.9353 -0.0004 32 1 2.6212 1.4027 -0.9314 33 1 1.3586 2.1316 0.0897 34 1 3.4677 2.2561 2.9535 35 1 1.9441 2.7945 2.2074 36 1 0.3311 0.6131 6.0479 37 1 6.6147 1.8851 1.1309 38 1 7.2166 1.1288 2.6285 39 1 8.0454 0.0030 0.5104 40 1 6.3585 -0.4436 0.1523 41 1 5.7967 -2.4580 3.0566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293672538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:59 Heat of formation + Delta-G solvation = -186.717130 kcal Electronic energy + Delta-G solvation = -31179.519490 eV Core-core repulsion = 26452.705170 eV Total energy + Delta-G solvation = -4726.814320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.22672 -47.76850 -47.63841 -40.79027 -38.69096 -36.62146 -35.55680 -33.56466 -32.75920 -32.08727 -30.49243 -28.14422 -27.28528 -25.25452 -23.42260 -22.68732 -22.44302 -20.46218 -19.42595 -18.79139 -18.48641 -18.24245 -17.83668 -17.27191 -16.79805 -16.13913 -15.98035 -15.58884 -14.76852 -14.63367 -14.50034 -14.44005 -14.16188 -14.14476 -13.96824 -13.82846 -13.79792 -13.60181 -13.52056 -13.19617 -12.70087 -12.68741 -12.34826 -12.07440 -11.93555 -11.63552 -11.42583 -11.37370 -11.14370 -10.94509 -10.79805 -10.43468 -10.17554 -9.56328 -9.42868 -9.19801 -9.07313 -8.73633 -8.51062 -7.87168 -5.99914 -3.97100 2.39254 2.63330 2.89833 3.01662 3.23639 3.26276 3.28073 3.33371 3.57705 3.78613 3.90927 4.12870 4.39342 4.55037 4.68016 4.68232 4.86971 4.98058 5.10599 5.28022 5.47591 5.53374 5.61494 5.66125 5.72530 5.82262 5.92380 6.11770 6.25418 6.40167 6.47008 6.63078 6.79686 7.09400 7.17116 7.27760 7.38299 7.56134 7.99492 8.45978 8.53676 8.67248 9.15459 9.57899 11.13906 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.004593 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.563167 B = 6094.905403 C = 6731.163789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C 0.150 3.850 4 N -0.575 5.575 5 C 0.204 3.796 6 C -0.508 4.508 7 H 0.085 0.915 8 C 0.078 3.922 9 N -0.889 5.889 10 Si 0.862 3.138 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.533 3.467 15 O -0.556 6.556 16 C -0.130 4.130 17 H 0.135 0.865 18 C -0.099 4.099 19 C -0.154 4.154 20 C 0.110 3.890 21 H 0.113 0.887 22 C 0.440 3.560 23 F -0.170 7.170 24 F -0.178 7.178 25 F -0.184 7.184 26 N -0.721 5.721 27 C 0.527 3.473 28 O -0.463 6.463 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.261 0.739 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.147 0.247 -8.075 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.028 3.972 4 N -0.303 5.303 5 C 0.083 3.917 6 C -0.547 4.547 7 H 0.103 0.897 8 C -0.125 4.125 9 N -0.528 5.528 10 Si 0.689 3.311 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.193 1.193 14 C 0.319 3.681 15 O -0.437 6.437 16 C -0.154 4.154 17 H 0.152 0.848 18 C -0.137 4.137 19 C -0.192 4.192 20 C 0.002 3.998 21 H 0.130 0.870 22 C 0.385 3.615 23 F -0.151 7.151 24 F -0.160 7.160 25 F -0.165 7.165 26 N -0.379 5.379 27 C 0.311 3.689 28 O -0.332 6.332 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 13.667 0.124 -8.155 15.916 hybrid contribution 0.100 0.165 0.818 0.840 sum 13.767 0.289 -7.337 15.603 Atomic orbital electron populations 1.23611 0.95673 1.01300 1.01067 1.23039 0.96022 0.98524 0.99262 1.20438 0.91626 0.95752 0.89417 1.47952 1.11715 1.56347 1.14310 1.20025 0.96173 0.94653 0.80845 1.21183 1.33406 0.99244 1.00819 0.89674 1.24785 0.94985 0.96163 0.96546 1.69885 1.36975 1.33858 1.12034 0.87104 0.78950 0.86029 0.78982 1.20261 1.21116 1.19331 1.19656 0.82273 0.77806 0.88333 1.90531 1.75122 1.49900 1.28170 1.21525 0.96830 0.97648 0.99364 0.84753 1.21479 0.93326 0.98528 1.00342 1.22361 1.05326 0.92301 0.99166 1.22078 0.91019 0.92319 0.94427 0.86980 1.21023 0.74448 0.86410 0.79658 1.93249 1.56001 1.95439 1.70442 1.93180 1.48473 1.95555 1.78783 1.93189 1.95660 1.57455 1.70245 1.45400 1.20629 1.16995 1.54865 1.19422 0.82235 0.85622 0.81633 1.91109 1.27480 1.79335 1.35270 0.89007 0.88805 0.88106 0.90162 0.90254 0.94921 0.95353 0.92859 0.89579 0.90319 0.89023 0.85835 0.75930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 14.32 29.02 0.42 -2.66 16 2 C -0.15 -2.79 9.54 -36.03 -0.34 -3.13 16 3 C 0.15 2.66 5.89 -5.19 -0.03 2.63 16 4 N -0.58 -11.36 2.45 -176.43 -0.43 -11.79 16 5 C 0.20 4.43 4.12 -5.19 -0.02 4.41 16 6 C -0.51 -13.51 8.31 -34.44 -0.29 -13.80 16 7 H 0.09 2.61 7.70 -52.49 -0.40 2.21 16 8 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 9 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 10 Si 0.86 20.11 27.47 -169.99 -4.67 15.44 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 14 C 0.53 10.03 6.56 -10.99 -0.07 9.96 16 15 O -0.56 -10.76 13.54 5.56 0.08 -10.69 16 16 C -0.13 -2.15 2.45 -93.14 -0.23 -2.38 16 17 H 0.13 2.32 5.51 -51.93 -0.29 2.03 16 18 C -0.10 -1.16 5.34 -26.51 -0.14 -1.30 16 19 C -0.15 -1.77 4.90 -26.59 -0.13 -1.90 16 20 C 0.11 1.22 3.06 -68.38 -0.21 1.01 16 21 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 22 C 0.44 5.16 2.79 37.16 0.10 5.26 16 23 F -0.17 -2.45 16.58 2.25 0.04 -2.42 16 24 F -0.18 -1.94 16.91 2.25 0.04 -1.90 16 25 F -0.18 -2.16 16.87 2.25 0.04 -2.12 16 26 N -0.72 -10.37 5.04 -54.86 -0.28 -10.64 16 27 C 0.53 9.65 6.94 -11.87 -0.08 9.57 16 28 O -0.46 -10.98 16.05 5.56 0.09 -10.89 16 29 H 0.09 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.09 1.49 7.84 -52.48 -0.41 1.08 16 31 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.08 1.33 7.46 -51.93 -0.39 0.94 16 33 H 0.08 1.28 7.56 -51.93 -0.39 0.89 16 34 H 0.03 0.69 4.66 -51.93 -0.24 0.45 16 35 H 0.03 0.60 7.38 -51.93 -0.38 0.21 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 39 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 40 H 0.12 1.82 4.80 -51.93 -0.25 1.57 16 41 H 0.40 5.62 8.27 -40.82 -0.34 5.28 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -32.73 347.30 -5.00 -37.73 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.79 Total: 8.38 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -1.12 Total: 9.72 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.07 Total: -48.49 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.16 Total: -21.58 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.44 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.73 -5.00 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293672538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.984 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds