Wall clock time and date at job start Tue Mar 31 2020 17:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50696 * 119.99980 * 2 1 4 4 N 1.46504 * 109.47147 * 125.00553 * 3 2 1 5 5 C 1.46502 * 119.99809 * 266.52253 * 4 3 2 6 6 C 1.50702 * 109.47084 * 84.34401 * 5 4 3 7 7 H 1.07994 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99829 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00243 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00411 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.46985 * 90.00055 * 10 8 6 12 12 H 1.48491 * 109.47294 * 210.00688 * 10 8 6 13 13 H 1.48497 * 109.46689 * 330.00564 * 10 8 6 14 14 C 1.34769 * 120.00196 * 86.51896 * 4 3 2 15 15 O 1.21280 * 120.00115 * 5.15672 * 14 4 3 16 16 C 1.50706 * 120.00243 * 185.15548 * 14 4 3 17 17 H 1.09001 * 109.39579 * 336.54793 * 16 14 4 18 18 C 1.53071 * 109.40252 * 216.81074 * 16 14 4 19 19 C 1.53365 * 108.40984 * 288.77889 * 18 16 14 20 20 C 1.52914 * 108.66223 * 292.44159 * 19 18 16 21 21 H 1.08992 * 109.30646 * 290.45589 * 20 19 18 22 22 C 1.53002 * 109.13299 * 170.96952 * 20 19 18 23 23 F 1.39898 * 109.47139 * 299.06804 * 22 20 19 24 24 F 1.39897 * 109.46929 * 59.07303 * 22 20 19 25 25 F 1.39906 * 109.46843 * 179.06819 * 22 20 19 26 26 N 1.45754 * 110.48641 * 50.76848 * 20 19 18 27 27 C 1.33362 * 124.10636 * 340.94554 * 26 20 19 28 28 O 1.21283 * 118.24466 * 182.20360 * 27 26 20 29 29 H 1.08003 * 120.00338 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00125 * 359.71615 * 1 2 3 31 31 H 1.08000 * 119.99869 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47643 * 245.00375 * 3 2 1 33 33 H 1.08999 * 109.47447 * 5.00621 * 3 2 1 34 34 H 1.08995 * 109.47239 * 204.34372 * 5 4 3 35 35 H 1.08998 * 109.47181 * 324.34271 * 5 4 3 36 36 H 0.96996 * 120.00498 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.67186 * 48.49954 * 18 16 14 38 38 H 1.08997 * 109.67634 * 169.03260 * 18 16 14 39 39 H 1.09004 * 109.59764 * 172.69488 * 19 18 16 40 40 H 1.09001 * 109.75580 * 52.28667 * 19 18 16 41 41 H 0.97006 * 117.94798 * 160.92390 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5841 1.9340 2.4025 6 6 1.8260 0.9187 3.2182 7 1 1.6650 -0.0756 2.8285 8 6 1.3369 1.2594 4.4614 9 7 0.6748 0.3735 5.1731 10 14 1.6147 2.9794 5.1352 11 1 0.4901 3.8588 4.7263 12 1 1.6869 2.9248 6.6173 13 1 2.8881 3.5220 4.5973 14 6 4.2265 0.8024 1.0029 15 8 4.5994 0.3884 -0.0744 16 6 5.1416 0.7247 2.1977 17 1 4.8454 1.4759 2.9299 18 6 6.5820 0.9908 1.7532 19 6 7.0709 -0.2181 0.9459 20 6 7.1892 -1.4186 1.8856 21 1 8.0187 -1.2570 2.5739 22 6 7.4560 -2.6781 1.0589 23 9 6.3888 -2.8943 0.1807 24 9 8.6367 -2.5138 0.3267 25 9 7.5867 -3.7779 1.9138 26 7 5.9587 -1.5937 2.6468 27 6 5.0412 -0.6405 2.8150 28 8 4.0745 -0.8895 3.5037 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0046 31 1 1.8499 -0.9353 -0.0004 32 1 2.6212 1.4027 -0.9314 33 1 1.3586 2.1316 0.0897 34 1 3.4677 2.2561 2.9535 35 1 1.9441 2.7945 2.2074 36 1 0.3311 0.6131 6.0479 37 1 6.6147 1.8851 1.1309 38 1 7.2166 1.1288 2.6285 39 1 8.0454 0.0030 0.5104 40 1 6.3585 -0.4436 0.1523 41 1 5.7967 -2.4580 3.0566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293672538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:59 Heat of formation + Delta-G solvation = -209.827700 kcal Electronic energy + Delta-G solvation = -31180.521640 eV Core-core repulsion = 26452.705170 eV Total energy + Delta-G solvation = -4727.816470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.19552 -48.70250 -48.65985 -42.13622 -40.14412 -37.96148 -37.04518 -35.08619 -34.24796 -33.77887 -31.68962 -29.96945 -28.47287 -26.60514 -24.60329 -24.25617 -23.72210 -21.80353 -20.83635 -19.88889 -19.48310 -19.32833 -19.13018 -18.95877 -18.40765 -17.51023 -17.33007 -16.98296 -16.30492 -16.00251 -15.73080 -15.62140 -15.43093 -15.20323 -15.10527 -15.05840 -14.84404 -14.80999 -14.71377 -14.57428 -14.27707 -14.02221 -13.78477 -13.66951 -13.35555 -12.94528 -12.84171 -12.55559 -12.52352 -12.41807 -12.26964 -11.96742 -11.75590 -11.52601 -10.91936 -10.67096 -10.57387 -10.38502 -10.16546 -9.48668 -8.09569 -6.11022 1.06183 1.38518 1.42221 1.44532 1.52142 1.58376 1.72770 2.01104 2.40179 2.44796 2.64658 2.89794 3.11135 3.22851 3.45649 3.55978 3.64607 3.70863 3.93107 4.04855 4.11748 4.22464 4.43330 4.52155 4.65056 4.72137 4.79963 4.82033 4.92481 4.96183 5.01598 5.30104 5.52452 5.58426 5.60790 5.69906 5.90925 5.99440 6.30417 6.59869 6.94521 7.11699 7.17145 7.48484 9.08616 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.004593 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.563167 B = 6094.905403 C = 6731.163789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.171 4.171 3 C 0.149 3.851 4 N -0.584 5.584 5 C 0.209 3.791 6 C -0.490 4.490 7 H 0.028 0.972 8 C 0.010 3.990 9 N -0.951 5.951 10 Si 0.933 3.067 11 H -0.265 1.265 12 H -0.295 1.295 13 H -0.232 1.232 14 C 0.527 3.473 15 O -0.563 6.563 16 C -0.131 4.131 17 H 0.129 0.871 18 C -0.092 4.092 19 C -0.154 4.154 20 C 0.109 3.891 21 H 0.160 0.840 22 C 0.442 3.558 23 F -0.191 7.191 24 F -0.169 7.169 25 F -0.185 7.185 26 N -0.713 5.713 27 C 0.527 3.473 28 O -0.534 6.534 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.258 0.742 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.090 0.910 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.861 2.923 -8.708 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C 0.027 3.973 4 N -0.313 5.313 5 C 0.088 3.912 6 C -0.529 4.529 7 H 0.047 0.953 8 C -0.187 4.187 9 N -0.593 5.593 10 Si 0.756 3.244 11 H -0.191 1.191 12 H -0.222 1.222 13 H -0.155 1.155 14 C 0.315 3.685 15 O -0.444 6.444 16 C -0.155 4.155 17 H 0.146 0.854 18 C -0.129 4.129 19 C -0.191 4.191 20 C 0.002 3.998 21 H 0.177 0.823 22 C 0.387 3.613 23 F -0.173 7.173 24 F -0.150 7.150 25 F -0.166 7.166 26 N -0.368 5.368 27 C 0.312 3.688 28 O -0.408 6.408 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.132 0.868 39 H 0.148 0.852 40 H 0.108 0.892 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 16.459 2.793 -8.863 18.901 hybrid contribution -0.701 -0.866 0.891 1.426 sum 15.759 1.928 -7.972 17.765 Atomic orbital electron populations 1.23830 0.95308 1.02465 0.99168 1.23029 0.96648 0.98258 1.01113 1.20579 0.91858 0.95515 0.89377 1.48007 1.12421 1.56833 1.14024 1.19869 0.96433 0.93682 0.81265 1.21228 1.32740 0.97849 1.01120 0.95333 1.25732 0.94887 1.01072 0.96988 1.70101 1.39605 1.36926 1.12632 0.85953 0.80768 0.80158 0.77475 1.19055 1.22175 1.15466 1.20104 0.82315 0.77116 0.89011 1.90539 1.75324 1.49758 1.28772 1.21581 0.99662 0.96182 0.98103 0.85356 1.21595 0.90152 0.99132 1.02039 1.22365 1.06458 0.92068 0.98209 1.22488 0.90501 0.91891 0.94935 0.82320 1.21102 0.74200 0.86613 0.79420 1.93216 1.57203 1.95597 1.71252 1.93199 1.47725 1.95496 1.78591 1.93193 1.95620 1.57624 1.70159 1.45336 1.21108 1.16193 1.54164 1.19783 0.81640 0.86707 0.80647 1.91089 1.30364 1.80754 1.38601 0.88622 0.86850 0.90880 0.88980 0.88329 0.93173 0.93314 0.93278 0.87973 0.86820 0.85155 0.89174 0.75937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.92 14.32 67.79 0.97 -4.95 16 2 C -0.17 -6.59 9.54 25.65 0.24 -6.35 16 3 C 0.15 5.18 5.89 85.63 0.50 5.68 16 4 N -0.58 -22.74 2.45 -830.51 -2.03 -24.77 16 5 C 0.21 8.83 4.12 85.63 0.35 9.18 16 6 C -0.49 -26.70 8.31 25.60 0.21 -26.49 16 7 H 0.03 1.85 7.70 -2.91 -0.02 1.83 16 8 C 0.01 0.54 5.47 84.65 0.46 1.00 16 9 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 10 Si 0.93 40.93 27.47 68.60 1.88 42.81 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.23 -8.71 6.54 99.48 0.65 -8.06 16 14 C 0.53 19.49 6.56 87.66 0.57 20.06 16 15 O -0.56 -21.46 13.54 -3.03 -0.04 -21.50 16 16 C -0.13 -4.17 2.45 -12.43 -0.03 -4.20 16 17 H 0.13 4.19 5.51 -2.39 -0.01 4.18 16 18 C -0.09 -1.80 5.34 30.74 0.16 -1.64 16 19 C -0.15 -2.99 4.90 30.69 0.15 -2.84 16 20 C 0.11 2.09 3.06 45.10 0.14 2.23 16 21 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 22 C 0.44 9.51 2.79 71.98 0.20 9.71 16 23 F -0.19 -5.47 16.58 44.97 0.75 -4.72 16 24 F -0.17 -3.18 16.91 44.97 0.76 -2.42 16 25 F -0.18 -4.04 16.87 44.97 0.76 -3.29 16 26 N -0.71 -19.96 5.04 -446.65 -2.25 -22.21 16 27 C 0.53 19.40 6.94 87.71 0.61 20.01 16 28 O -0.53 -26.58 16.05 -3.04 -0.05 -26.63 16 29 H 0.10 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.11 3.48 7.84 -2.91 -0.02 3.46 16 31 H 0.07 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.09 2.96 7.46 -2.39 -0.02 2.94 16 33 H 0.10 3.01 7.56 -2.39 -0.02 2.99 16 34 H 0.05 1.99 4.66 -2.39 -0.01 1.98 16 35 H 0.05 1.90 7.38 -2.39 -0.02 1.88 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 37 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 38 H 0.11 1.50 8.13 -2.39 -0.02 1.48 16 39 H 0.13 1.58 8.03 -2.39 -0.02 1.56 16 40 H 0.09 2.48 4.80 -2.39 -0.01 2.47 16 41 H 0.40 11.32 8.27 -92.70 -0.77 10.55 16 Total: -1.00 -77.34 347.30 4.90 -72.45 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.27 Total: 28.56 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 4.55 Total: 21.41 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.99 Total: -106.66 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -0.09 Total: -48.13 kcal Atomic # 9 Polarization: -12.70 SS G_CDS: 2.26 Total: -10.43 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.88 Total: 42.81 kcal Total: -77.34 4.90 -72.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293672538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.382 kcal (2) G-P(sol) polarization free energy of solvation -77.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds