Wall clock time and date at job start Tue Mar 31 2020 17:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99921 * 2 1 4 4 N 1.46494 * 109.47230 * 125.00311 * 3 2 1 5 5 C 1.46494 * 119.99978 * 84.43337 * 4 3 2 6 6 C 1.50707 * 109.47260 * 95.49918 * 5 4 3 7 7 H 1.08005 * 119.99703 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00243 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00031 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00090 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47351 * 270.00160 * 10 8 6 12 12 H 1.48500 * 109.47173 * 30.00126 * 10 8 6 13 13 H 1.48496 * 109.47220 * 150.00041 * 10 8 6 14 14 C 1.34774 * 119.99996 * 264.43770 * 4 3 2 15 15 O 1.21283 * 120.00346 * 4.26027 * 14 4 3 16 16 C 1.50705 * 120.00119 * 184.27216 * 14 4 3 17 17 H 1.09001 * 109.40228 * 37.98105 * 16 14 4 18 18 C 1.53062 * 109.40202 * 157.81393 * 16 14 4 19 19 C 1.53352 * 108.42585 * 169.02413 * 18 16 14 20 20 C 1.52910 * 108.67427 * 292.46856 * 19 18 16 21 21 H 1.09001 * 109.30348 * 290.43898 * 20 19 18 22 22 C 1.53001 * 109.30195 * 170.85389 * 20 19 18 23 23 F 1.39907 * 109.46852 * 60.00319 * 22 20 19 24 24 F 1.39899 * 109.47406 * 179.97438 * 22 20 19 25 25 F 1.39893 * 109.47433 * 300.00255 * 22 20 19 26 26 N 1.45757 * 110.48909 * 50.75343 * 20 19 18 27 27 C 1.33239 * 124.06909 * 340.83700 * 26 20 19 28 28 O 1.21278 * 118.15511 * 182.28960 * 27 26 20 29 29 H 1.08003 * 119.99674 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99764 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.99764 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47437 * 5.00018 * 3 2 1 33 33 H 1.09005 * 109.46698 * 245.00312 * 3 2 1 34 34 H 1.09001 * 109.47734 * 335.49719 * 5 4 3 35 35 H 1.09003 * 109.47203 * 215.49358 * 5 4 3 36 36 H 0.97004 * 120.00020 * 359.97438 * 9 8 6 37 37 H 1.09007 * 109.67627 * 288.75809 * 18 16 14 38 38 H 1.08996 * 109.67936 * 49.25831 * 18 16 14 39 39 H 1.09005 * 109.59700 * 52.22450 * 19 18 16 40 40 H 1.09003 * 109.60139 * 172.54722 * 19 18 16 41 41 H 0.97003 * 117.95249 * 160.92748 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3171 0.7159 1.0063 6 6 5.3275 1.7683 0.6285 7 1 5.0150 2.7935 0.4945 8 6 6.6507 1.4225 0.4539 9 7 7.0313 0.1743 0.6176 10 14 7.9029 2.7269 -0.0151 11 1 7.9900 2.8202 -1.4946 12 1 7.4827 4.0386 0.5398 13 1 9.2314 2.3587 0.5367 14 6 2.6323 1.9232 2.2872 15 8 1.5102 2.3647 2.4175 16 6 3.6223 2.0360 3.4178 17 1 4.6122 2.2463 3.0127 18 6 3.2020 3.1749 4.3500 19 6 4.0513 3.0966 5.6245 20 6 3.6684 1.8300 6.3909 21 1 2.6634 1.9445 6.7970 22 6 4.6565 1.6158 7.5393 23 9 4.6141 2.7161 8.4023 24 9 4.3091 0.4579 8.2435 25 9 5.9492 1.4778 7.0227 26 7 3.7024 0.6701 5.5089 27 6 3.6594 0.7421 4.1792 28 8 3.6517 -0.2947 3.5499 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9315 34 1 4.2883 -0.0537 0.2349 35 1 4.5998 0.2659 1.9580 36 1 6.3811 -0.5030 0.8615 37 1 3.3675 4.1329 3.8570 38 1 2.1472 3.0706 4.6044 39 1 5.1075 3.0577 5.3581 40 1 3.8623 3.9732 6.2442 41 1 3.7586 -0.2088 5.9155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293672543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:06 Heat of formation + Delta-G solvation = -207.722179 kcal Electronic energy + Delta-G solvation = -30727.014205 eV Core-core repulsion = 25999.289037 eV Total energy + Delta-G solvation = -4727.725168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.37257 -47.89877 -47.80132 -40.85538 -38.71971 -36.87483 -35.57201 -33.86020 -33.00246 -32.14366 -30.68486 -27.59936 -26.86019 -25.25170 -23.42205 -23.03015 -22.82544 -20.27203 -19.45139 -19.00899 -18.60641 -18.47864 -18.17429 -17.30273 -16.78834 -16.56866 -16.05166 -15.33234 -15.08545 -14.75370 -14.61555 -14.36403 -14.29533 -14.23224 -14.00266 -13.97203 -13.84792 -13.83169 -13.63521 -13.42189 -12.89951 -12.61413 -12.42000 -12.02045 -11.93561 -11.58242 -11.53514 -11.33570 -11.00146 -10.93342 -10.77030 -10.59186 -10.20953 -9.61599 -9.44690 -9.39348 -9.23135 -9.00819 -8.47885 -7.67555 -6.49341 -4.25974 2.26285 2.49726 2.68603 2.79357 3.21715 3.35718 3.36835 3.41894 3.53182 3.65411 3.90993 3.98222 4.37487 4.41314 4.55757 4.63681 4.74465 4.98843 5.22265 5.28353 5.32007 5.39687 5.52612 5.57191 5.70897 5.89176 5.97259 6.11548 6.19499 6.27844 6.53764 6.60319 6.91181 6.99400 7.07754 7.16679 7.41765 7.90083 8.08476 8.16870 8.40277 8.66301 8.81811 9.46319 10.86583 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.005032 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.584737 B = 5563.243987 C = 7289.004851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.142 3.858 4 N -0.571 5.571 5 C 0.211 3.789 6 C -0.625 4.625 7 H 0.054 0.946 8 C 0.024 3.976 9 N -0.902 5.902 10 Si 1.069 2.931 11 H -0.287 1.287 12 H -0.287 1.287 13 H -0.283 1.283 14 C 0.539 3.461 15 O -0.569 6.569 16 C -0.130 4.130 17 H 0.153 0.847 18 C -0.101 4.101 19 C -0.139 4.139 20 C 0.107 3.893 21 H 0.120 0.880 22 C 0.441 3.559 23 F -0.176 7.176 24 F -0.182 7.182 25 F -0.171 7.171 26 N -0.717 5.717 27 C 0.543 3.457 28 O -0.512 6.512 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.060 0.940 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 4.814 11.856 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.298 5.298 5 C 0.091 3.909 6 C -0.664 4.664 7 H 0.073 0.927 8 C -0.182 4.182 9 N -0.537 5.537 10 Si 0.897 3.103 11 H -0.213 1.213 12 H -0.213 1.213 13 H -0.209 1.209 14 C 0.325 3.675 15 O -0.450 6.450 16 C -0.153 4.153 17 H 0.171 0.829 18 C -0.139 4.139 19 C -0.176 4.176 20 C -0.001 4.001 21 H 0.137 0.863 22 C 0.386 3.614 23 F -0.157 7.157 24 F -0.163 7.163 25 F -0.153 7.153 26 N -0.372 5.372 27 C 0.330 3.670 28 O -0.386 6.386 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.773 4.904 11.100 13.438 hybrid contribution -1.185 -0.780 0.729 1.595 sum -6.958 4.124 11.829 14.330 Atomic orbital electron populations 1.23724 0.95781 1.01333 1.01949 1.23378 0.96139 0.99369 0.98557 1.20466 0.92328 0.95122 0.90145 1.47870 1.17070 1.53895 1.10969 1.19910 0.77726 0.93838 0.99429 1.22393 0.94770 0.95870 1.53364 0.92721 1.25783 0.97929 1.00139 0.94316 1.70750 1.38568 1.01449 1.42888 0.83541 0.75762 0.74239 0.76801 1.21314 1.21342 1.20860 1.19488 0.86802 0.77796 0.83365 1.90595 1.21053 1.51229 1.82108 1.21536 1.04987 0.93400 0.95409 0.82940 1.21488 1.00641 0.98608 0.93161 1.22061 1.02964 0.94830 0.97773 1.22150 0.98568 0.90099 0.89284 0.86263 1.20965 0.82222 0.74095 0.84152 1.93200 1.96488 1.53894 1.72144 1.93196 1.91931 1.50418 1.80781 1.93245 1.40145 1.95444 1.86439 1.45310 1.77000 1.08826 1.06102 1.19631 0.74827 0.91349 0.81178 1.90791 1.47724 1.35158 1.64941 0.88943 0.88655 0.87503 0.90188 0.89709 0.95838 0.92260 0.91739 0.89116 0.89461 0.88939 0.87899 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.91 14.32 29.01 0.42 -2.50 16 2 C -0.16 -2.74 9.84 -36.03 -0.35 -3.09 16 3 C 0.14 2.73 5.85 -5.20 -0.03 2.70 16 4 N -0.57 -12.36 2.44 -176.44 -0.43 -12.80 16 5 C 0.21 5.14 3.92 -5.19 -0.02 5.12 16 6 C -0.63 -16.15 8.16 -34.44 -0.28 -16.43 16 7 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 8 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 9 N -0.90 -25.90 13.65 55.43 0.76 -25.15 16 10 Si 1.07 23.71 29.90 -169.99 -5.08 18.62 16 11 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 14 C 0.54 11.18 6.41 -10.98 -0.07 11.11 16 15 O -0.57 -12.25 15.36 5.56 0.09 -12.16 16 16 C -0.13 -2.30 2.01 -93.14 -0.19 -2.49 16 17 H 0.15 3.00 6.37 -51.93 -0.33 2.67 16 18 C -0.10 -1.32 5.03 -26.52 -0.13 -1.45 16 19 C -0.14 -1.39 5.04 -26.60 -0.13 -1.52 16 20 C 0.11 1.08 3.05 -68.38 -0.21 0.87 16 21 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 22 C 0.44 4.54 2.79 37.16 0.10 4.64 16 23 F -0.18 -1.69 16.97 2.25 0.04 -1.65 16 24 F -0.18 -1.92 16.82 2.25 0.04 -1.88 16 25 F -0.17 -2.14 16.57 2.25 0.04 -2.10 16 26 N -0.72 -9.57 5.04 -54.88 -0.28 -9.85 16 27 C 0.54 9.66 7.09 -11.92 -0.08 9.57 16 28 O -0.51 -11.08 14.43 5.56 0.08 -11.00 16 29 H 0.09 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 31 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.08 1.49 6.97 -51.93 -0.36 1.13 16 33 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 34 H 0.02 0.61 7.90 -51.93 -0.41 0.20 16 35 H 0.06 1.53 4.28 -51.93 -0.22 1.30 16 36 H 0.27 7.91 7.22 -40.82 -0.29 7.61 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.15 7.46 -51.93 -0.39 0.76 16 39 H 0.09 1.01 7.54 -51.93 -0.39 0.61 16 40 H 0.10 0.73 8.06 -51.93 -0.42 0.31 16 41 H 0.40 5.05 8.23 -40.82 -0.34 4.72 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -31.51 351.67 -5.42 -36.94 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.88 Total: 8.65 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.08 Total: 7.08 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.05 Total: -47.79 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: 0.17 Total: -23.17 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.11 Total: -5.63 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.08 Total: 18.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.51 -5.42 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293672543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.787 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds