Wall clock time and date at job start Tue Mar 31 2020 17:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99921 * 2 1 4 4 N 1.46494 * 109.47230 * 125.00311 * 3 2 1 5 5 C 1.46494 * 119.99978 * 84.43337 * 4 3 2 6 6 C 1.50707 * 109.47260 * 95.49918 * 5 4 3 7 7 H 1.08005 * 119.99703 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00243 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00031 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00090 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47351 * 270.00160 * 10 8 6 12 12 H 1.48500 * 109.47173 * 30.00126 * 10 8 6 13 13 H 1.48496 * 109.47220 * 150.00041 * 10 8 6 14 14 C 1.34774 * 119.99996 * 264.43770 * 4 3 2 15 15 O 1.21283 * 120.00346 * 4.26027 * 14 4 3 16 16 C 1.50705 * 120.00119 * 184.27216 * 14 4 3 17 17 H 1.09001 * 109.40228 * 37.98105 * 16 14 4 18 18 C 1.53062 * 109.40202 * 157.81393 * 16 14 4 19 19 C 1.53352 * 108.42585 * 169.02413 * 18 16 14 20 20 C 1.52910 * 108.67427 * 292.46856 * 19 18 16 21 21 H 1.09001 * 109.30348 * 290.43898 * 20 19 18 22 22 C 1.53001 * 109.30195 * 170.85389 * 20 19 18 23 23 F 1.39907 * 109.46852 * 60.00319 * 22 20 19 24 24 F 1.39899 * 109.47406 * 179.97438 * 22 20 19 25 25 F 1.39893 * 109.47433 * 300.00255 * 22 20 19 26 26 N 1.45757 * 110.48909 * 50.75343 * 20 19 18 27 27 C 1.33239 * 124.06909 * 340.83700 * 26 20 19 28 28 O 1.21278 * 118.15511 * 182.28960 * 27 26 20 29 29 H 1.08003 * 119.99674 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99764 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.99764 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47437 * 5.00018 * 3 2 1 33 33 H 1.09005 * 109.46698 * 245.00312 * 3 2 1 34 34 H 1.09001 * 109.47734 * 335.49719 * 5 4 3 35 35 H 1.09003 * 109.47203 * 215.49358 * 5 4 3 36 36 H 0.97004 * 120.00020 * 359.97438 * 9 8 6 37 37 H 1.09007 * 109.67627 * 288.75809 * 18 16 14 38 38 H 1.08996 * 109.67936 * 49.25831 * 18 16 14 39 39 H 1.09005 * 109.59700 * 52.22450 * 19 18 16 40 40 H 1.09003 * 109.60139 * 172.54722 * 19 18 16 41 41 H 0.97003 * 117.95249 * 160.92748 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3171 0.7159 1.0063 6 6 5.3275 1.7683 0.6285 7 1 5.0150 2.7935 0.4945 8 6 6.6507 1.4225 0.4539 9 7 7.0313 0.1743 0.6176 10 14 7.9029 2.7269 -0.0151 11 1 7.9900 2.8202 -1.4946 12 1 7.4827 4.0386 0.5398 13 1 9.2314 2.3587 0.5367 14 6 2.6323 1.9232 2.2872 15 8 1.5102 2.3647 2.4175 16 6 3.6223 2.0360 3.4178 17 1 4.6122 2.2463 3.0127 18 6 3.2020 3.1749 4.3500 19 6 4.0513 3.0966 5.6245 20 6 3.6684 1.8300 6.3909 21 1 2.6634 1.9445 6.7970 22 6 4.6565 1.6158 7.5393 23 9 4.6141 2.7161 8.4023 24 9 4.3091 0.4579 8.2435 25 9 5.9492 1.4778 7.0227 26 7 3.7024 0.6701 5.5089 27 6 3.6594 0.7421 4.1792 28 8 3.6517 -0.2947 3.5499 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9315 34 1 4.2883 -0.0537 0.2349 35 1 4.5998 0.2659 1.9580 36 1 6.3811 -0.5030 0.8615 37 1 3.3675 4.1329 3.8570 38 1 2.1472 3.0706 4.6044 39 1 5.1075 3.0577 5.3581 40 1 3.8623 3.9732 6.2442 41 1 3.7586 -0.2088 5.9155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293672543.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:05 Heat of formation + Delta-G solvation = -228.171268 kcal Electronic energy + Delta-G solvation = -30727.900944 eV Core-core repulsion = 25999.289037 eV Total energy + Delta-G solvation = -4728.611907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.21760 -48.72195 -48.67613 -42.23756 -40.24986 -38.13548 -37.19644 -35.53137 -34.39938 -33.77612 -31.82786 -29.04819 -28.48735 -26.65512 -25.02596 -24.42953 -23.96446 -21.56531 -20.77765 -20.19284 -19.63470 -19.44864 -19.27972 -18.99848 -18.22269 -18.04828 -17.52636 -16.77249 -16.40599 -15.87228 -15.71313 -15.63214 -15.51574 -15.43384 -15.21976 -15.11300 -14.94418 -14.87405 -14.81119 -14.72736 -14.26038 -14.14931 -13.80259 -13.67374 -13.37777 -13.16950 -12.65170 -12.62572 -12.57990 -12.30362 -12.26528 -12.02651 -11.91239 -11.22557 -11.07942 -10.94567 -10.61994 -10.52706 -10.38518 -9.48039 -8.63237 -6.41981 1.09402 1.22748 1.35217 1.55410 1.60977 1.62250 1.80060 1.89031 2.34694 2.56120 2.60084 2.81971 3.04639 3.14888 3.39890 3.42932 3.52577 3.61597 3.90983 3.99934 4.10794 4.20764 4.27572 4.42198 4.59995 4.67125 4.68275 4.76685 4.88911 4.91858 5.12041 5.14158 5.45227 5.58176 5.58641 5.73790 5.78580 5.84356 6.09609 6.46211 6.56357 6.85792 7.13473 7.39603 8.70031 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.005032 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.584737 B = 5563.243987 C = 7289.004851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.187 4.187 3 C 0.140 3.860 4 N -0.580 5.580 5 C 0.227 3.773 6 C -0.620 4.620 7 H 0.054 0.946 8 C -0.023 4.023 9 N -0.928 5.928 10 Si 1.114 2.886 11 H -0.277 1.277 12 H -0.264 1.264 13 H -0.285 1.285 14 C 0.532 3.468 15 O -0.577 6.577 16 C -0.130 4.130 17 H 0.130 0.870 18 C -0.093 4.093 19 C -0.134 4.134 20 C 0.103 3.897 21 H 0.158 0.842 22 C 0.448 3.552 23 F -0.166 7.166 24 F -0.183 7.183 25 F -0.187 7.187 26 N -0.704 5.704 27 C 0.541 3.459 28 O -0.562 6.562 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.079 0.921 34 H -0.002 1.002 35 H 0.048 0.952 36 H 0.256 0.744 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 6.897 13.356 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.206 4.206 3 C 0.018 3.982 4 N -0.308 5.308 5 C 0.106 3.894 6 C -0.658 4.658 7 H 0.072 0.928 8 C -0.222 4.222 9 N -0.565 5.565 10 Si 0.935 3.065 11 H -0.202 1.202 12 H -0.188 1.188 13 H -0.210 1.210 14 C 0.320 3.680 15 O -0.459 6.459 16 C -0.154 4.154 17 H 0.147 0.853 18 C -0.131 4.131 19 C -0.171 4.171 20 C -0.003 4.003 21 H 0.175 0.825 22 C 0.393 3.607 23 F -0.148 7.148 24 F -0.164 7.164 25 F -0.168 7.168 26 N -0.358 5.358 27 C 0.328 3.672 28 O -0.441 6.441 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.016 0.984 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.163 0.837 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.764 7.016 12.650 15.969 hybrid contribution -1.013 -1.436 0.312 1.785 sum -7.777 5.580 12.962 16.113 Atomic orbital electron populations 1.23983 0.94784 1.02991 0.97937 1.23202 0.97031 0.98057 1.02282 1.20562 0.92109 0.96313 0.89239 1.47920 1.16493 1.54085 1.12275 1.19504 0.79094 0.92999 0.97787 1.22570 0.95129 0.95930 1.52199 0.92799 1.27196 1.00359 1.00986 0.93684 1.70884 1.38155 1.02212 1.45218 0.82977 0.73451 0.72890 0.77156 1.20239 1.18811 1.21046 1.19990 0.87318 0.77078 0.83632 1.90565 1.21475 1.51581 1.82302 1.21532 1.02953 0.95406 0.95493 0.85274 1.21509 1.01294 0.96848 0.93437 1.22119 1.01778 0.96325 0.96863 1.22527 1.00506 0.88661 0.88638 0.82526 1.20865 0.81421 0.74251 0.84197 1.93223 1.96384 1.53360 1.71802 1.93202 1.91841 1.50580 1.80778 1.93225 1.41358 1.95548 1.86703 1.45175 1.75047 1.10501 1.05057 1.19676 0.74513 0.90611 0.82407 1.90765 1.50292 1.36552 1.66468 0.86531 0.87534 0.88858 0.89534 0.90302 0.98364 0.93480 0.93463 0.88168 0.89009 0.89857 0.83727 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 14.32 67.77 0.97 -3.68 16 2 C -0.19 -6.67 9.84 25.64 0.25 -6.42 16 3 C 0.14 5.49 5.85 85.63 0.50 5.99 16 4 N -0.58 -25.93 2.44 -830.51 -2.03 -27.95 16 5 C 0.23 11.64 3.92 85.64 0.34 11.97 16 6 C -0.62 -32.81 8.16 25.60 0.21 -32.60 16 7 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 8 C -0.02 -1.23 5.46 84.65 0.46 -0.77 16 9 N -0.93 -55.07 13.65 21.45 0.29 -54.78 16 10 Si 1.11 47.46 29.90 68.60 2.05 49.51 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.53 22.26 6.41 87.66 0.56 22.82 16 15 O -0.58 -24.48 15.36 -3.04 -0.05 -24.52 16 16 C -0.13 -4.62 2.01 -12.43 -0.02 -4.65 16 17 H 0.13 5.21 6.37 -2.39 -0.02 5.20 16 18 C -0.09 -2.23 5.03 30.73 0.15 -2.07 16 19 C -0.13 -2.26 5.04 30.68 0.15 -2.11 16 20 C 0.10 1.78 3.05 45.10 0.14 1.92 16 21 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 22 C 0.45 8.07 2.79 71.98 0.20 8.27 16 23 F -0.17 -2.63 16.97 44.97 0.76 -1.86 16 24 F -0.18 -3.45 16.82 44.97 0.76 -2.69 16 25 F -0.19 -4.40 16.57 44.97 0.74 -3.65 16 26 N -0.70 -18.10 5.04 -446.80 -2.25 -20.35 16 27 C 0.54 19.45 7.09 87.73 0.62 20.08 16 28 O -0.56 -25.43 14.43 -3.02 -0.04 -25.48 16 29 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.11 2.89 7.84 -2.91 -0.02 2.86 16 31 H 0.09 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.09 3.22 6.97 -2.39 -0.02 3.20 16 33 H 0.08 3.08 8.11 -2.38 -0.02 3.06 16 34 H 0.00 -0.10 7.90 -2.39 -0.02 -0.11 16 35 H 0.05 2.57 4.28 -2.39 -0.01 2.56 16 36 H 0.26 15.68 7.22 -92.70 -0.67 15.01 16 37 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.09 2.15 7.46 -2.39 -0.02 2.13 16 39 H 0.08 1.63 7.54 -2.38 -0.02 1.61 16 40 H 0.14 1.33 8.06 -2.39 -0.02 1.32 16 41 H 0.41 9.95 8.23 -92.71 -0.76 9.19 16 Total: -1.00 -70.67 351.67 5.20 -65.47 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.42 Total: 27.55 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 4.54 Total: 18.76 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.99 Total: -103.08 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 2.26 Total: -8.21 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.05 Total: 49.51 kcal Total: -70.67 5.20 -65.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293672543.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.702 kcal (2) G-P(sol) polarization free energy of solvation -70.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds