Wall clock time and date at job start Tue Mar 31 2020 18:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.50998 * 2 1 4 4 C 1.53295 * 109.51186 * 239.89866 * 2 1 3 5 5 N 1.47146 * 108.38404 * 187.72057 * 4 2 1 6 6 C 1.34777 * 120.98739 * 230.50962 * 5 4 2 7 7 O 1.21351 * 120.00421 * 186.70927 * 6 5 4 8 8 C 1.49357 * 119.99477 * 6.71429 * 6 5 4 9 9 O 1.21374 * 119.99859 * 6.73620 * 8 6 5 10 10 N 1.34777 * 119.99786 * 186.73713 * 8 6 5 11 11 C 1.39720 * 120.00161 * 175.24530 * 10 8 6 12 12 C 1.39026 * 120.03813 * 332.19870 * 11 10 8 13 13 C 1.38140 * 120.06105 * 180.02562 * 12 11 10 14 14 C 1.38184 * 120.14454 * 359.69976 * 13 12 11 15 15 C 1.38921 * 120.08081 * 0.55564 * 14 13 12 16 16 O 1.35745 * 120.02893 * 179.74597 * 15 14 13 17 17 C 1.34833 * 116.99761 * 185.42248 * 16 15 14 18 18 H 1.08005 * 120.00148 * 354.92595 * 17 16 15 19 19 C 1.38658 * 120.00200 * 174.93204 * 17 16 15 20 20 N 1.31555 * 119.99736 * 359.71986 * 19 17 16 21 21 Si 1.86795 * 120.00274 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47055 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47232 * 119.99654 * 21 19 17 24 24 H 1.48496 * 109.47258 * 240.00263 * 21 19 17 25 25 C 1.38762 * 119.93629 * 359.47209 * 15 14 13 26 26 C 1.47152 * 118.03245 * 50.78997 * 5 4 2 27 27 C 1.53712 * 108.16400 * 309.15540 * 26 5 4 28 28 O 1.42959 * 109.14685 * 52.53810 * 27 26 5 29 29 H 1.09000 * 109.47241 * 180.09878 * 1 2 3 30 30 H 1.09000 * 109.47286 * 300.10388 * 1 2 3 31 31 H 1.09007 * 109.47192 * 60.09863 * 1 2 3 32 32 H 1.09008 * 109.67828 * 68.00193 * 4 2 1 33 33 H 1.08995 * 109.71120 * 307.46517 * 4 2 1 34 34 H 0.97004 * 120.00156 * 355.24125 * 10 8 6 35 35 H 1.08002 * 119.96810 * 359.97438 * 12 11 10 36 36 H 1.08004 * 119.92584 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.95914 * 180.27931 * 14 13 12 38 38 H 0.96994 * 120.00328 * 180.02562 * 20 19 17 39 39 H 1.07993 * 120.06842 * 180.27492 * 25 15 14 40 40 H 1.08996 * 109.68427 * 68.93355 * 26 5 4 41 41 H 1.09004 * 109.68482 * 189.48927 * 26 5 4 42 42 H 1.09007 * 109.65590 * 292.57274 * 27 26 5 43 43 H 1.08993 * 109.48838 * 172.40037 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5013 -0.8746 -1.1346 6 6 4.3188 -0.5019 -2.1392 7 8 5.5062 -0.7441 -2.0769 8 6 3.7631 0.2093 -3.3292 9 8 2.6012 0.5602 -3.3386 10 7 4.5519 0.4614 -4.3926 11 6 4.0091 1.0369 -5.5443 12 6 2.6697 0.8354 -5.8580 13 6 2.1327 1.4038 -6.9968 14 6 2.9226 2.1789 -7.8242 15 6 4.2630 2.3798 -7.5193 16 8 5.0393 3.1372 -8.3356 17 6 6.3543 3.2002 -8.0444 18 1 6.7322 2.7300 -7.1485 19 6 7.2215 3.8686 -8.8951 20 7 6.7621 4.4367 -9.9892 21 14 9.0432 3.9565 -8.4915 22 1 9.3031 3.2389 -7.2175 23 1 9.8236 3.3234 -9.5848 24 1 9.4511 5.3774 -8.3507 25 6 4.8061 1.8101 -6.3765 26 6 4.0413 -1.4492 0.1078 27 6 3.4322 -0.6843 1.2939 28 8 2.0085 -0.6762 1.1652 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3634 0.5154 0.8890 31 1 -0.3634 0.5123 -0.8909 32 1 1.8022 -0.1393 -2.1378 33 1 1.5765 -1.7076 -1.3217 34 1 5.4964 0.2433 -4.3584 35 1 2.0488 0.2334 -5.2112 36 1 1.0919 1.2462 -7.2382 37 1 2.4986 2.6255 -8.7114 38 1 7.3687 4.9040 -10.5845 39 1 5.8467 1.9685 -6.1351 40 1 3.7736 -2.5039 0.1712 41 1 5.1262 -1.3440 0.1198 42 1 3.8033 0.3406 1.2986 43 1 3.7107 -1.1766 2.2256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298900367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:04 Heat of formation + Delta-G solvation = -80.678945 kcal Electronic energy + Delta-G solvation = -28450.404546 eV Core-core repulsion = 24270.045127 eV Total energy + Delta-G solvation = -4180.359419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40814 -39.88472 -38.89187 -38.38848 -36.71373 -35.33246 -34.25996 -33.21987 -32.30473 -29.77560 -29.43073 -28.73621 -26.83553 -25.61840 -25.12694 -23.35966 -22.01016 -21.83306 -20.94547 -20.06220 -18.38447 -18.10430 -17.38978 -17.12615 -16.79631 -16.34080 -15.88290 -15.54723 -15.48082 -15.28839 -15.05523 -14.75372 -14.36546 -14.15677 -14.02924 -13.68533 -13.37829 -13.24097 -13.07575 -12.76182 -12.48940 -12.44341 -12.17746 -11.93397 -11.72785 -11.58724 -11.41910 -11.13465 -11.09225 -10.96620 -10.85251 -10.52504 -10.47016 -10.00712 -9.57651 -9.19150 -8.99887 -8.87472 -7.87672 -7.28067 -6.50846 -4.10923 1.01173 1.96294 2.09560 2.29550 3.01271 3.09659 3.10939 3.16051 3.17829 3.38801 3.91651 4.07404 4.32112 4.49067 4.52380 4.68737 4.77621 4.79725 5.02941 5.03480 5.18791 5.19213 5.24584 5.39010 5.44032 5.47591 5.56107 5.64927 5.78792 5.87012 5.88489 5.99646 6.09748 6.15377 6.46113 6.65181 6.77927 6.78327 6.83304 7.01445 7.18288 7.28306 7.33453 7.54315 7.64589 7.87742 7.93680 8.94533 9.62508 10.66866 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.002631 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.700221 B =10640.084822 C =11805.040777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.064 0.936 4 C 0.021 3.979 5 N -0.586 5.586 6 C 0.513 3.487 7 O -0.517 6.517 8 C 0.508 3.492 9 O -0.492 6.492 10 N -0.627 5.627 11 C 0.170 3.830 12 C -0.209 4.209 13 C -0.062 4.062 14 C -0.195 4.195 15 C 0.169 3.831 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.041 3.959 20 N -0.860 5.860 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.252 4.252 26 C 0.073 3.927 27 C 0.051 3.949 28 O -0.381 6.381 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.167 0.833 33 H 0.074 0.926 34 H 0.420 0.580 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.270 0.730 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -10.648 19.019 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 H 0.082 0.918 4 C -0.100 4.100 5 N -0.321 5.321 6 C 0.295 3.705 7 O -0.392 6.392 8 C 0.291 3.709 9 O -0.369 6.369 10 N -0.271 5.271 11 C 0.078 3.922 12 C -0.230 4.230 13 C -0.081 4.081 14 C -0.215 4.215 15 C 0.114 3.886 16 O -0.076 6.076 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.274 4.274 26 C -0.049 4.049 27 C -0.027 4.027 28 O -0.300 6.300 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.183 0.817 33 H 0.092 0.908 34 H 0.258 0.742 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.458 -10.373 18.799 23.077 hybrid contribution 1.720 -0.046 0.227 1.736 sum -6.738 -10.419 19.026 22.714 Atomic orbital electron populations 1.21715 0.91937 1.03190 1.03126 1.22493 0.95843 0.95416 0.84454 0.91782 1.24029 0.77896 1.03883 1.04204 1.47939 1.08022 1.60591 1.15509 1.20010 0.86348 0.80050 0.84054 1.90775 1.15270 1.54187 1.78971 1.20052 0.86382 0.80696 0.83765 1.90306 1.16442 1.50891 1.79233 1.43181 1.13510 1.58163 1.12252 1.17446 0.93579 0.95600 0.85608 1.20669 0.94039 1.07953 1.00337 1.20545 0.98476 0.95776 0.93278 1.20317 0.92187 1.06175 1.02812 1.19047 0.91169 0.89220 0.89127 1.84009 1.19896 1.56919 1.46785 1.21347 0.79809 1.36741 1.09111 0.89065 1.25289 1.00212 0.95984 0.94910 1.70039 1.35874 1.32383 1.11168 0.85652 0.80567 0.78502 0.78749 1.19075 1.20069 1.20100 1.20797 1.01453 1.06211 0.98897 1.22543 1.01030 0.98240 0.83115 1.23021 0.81495 1.00221 0.97936 1.87954 1.20525 1.77522 1.43957 0.91635 0.91512 0.90227 0.81725 0.90776 0.74237 0.85541 0.86350 0.86185 0.91967 0.84974 0.90017 0.87857 0.92509 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.57 37.16 0.36 -0.69 16 2 C 0.08 0.70 3.40 -26.58 -0.09 0.61 16 3 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.02 0.21 5.78 -3.54 -0.02 0.19 16 5 N -0.59 -6.49 3.01 -172.57 -0.52 -7.01 16 6 C 0.51 6.79 7.75 -11.63 -0.09 6.70 16 7 O -0.52 -7.68 16.00 5.50 0.09 -7.59 16 8 C 0.51 7.32 7.57 -11.63 -0.09 7.23 16 9 O -0.49 -7.34 10.42 5.48 0.06 -7.28 16 10 N -0.63 -9.64 5.34 -10.31 -0.06 -9.69 16 11 C 0.17 3.11 6.38 -83.77 -0.53 2.58 16 12 C -0.21 -3.68 8.69 -39.33 -0.34 -4.02 16 13 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 14 C -0.20 -3.97 9.99 -39.35 -0.39 -4.36 16 15 C 0.17 3.94 6.64 -39.13 -0.26 3.68 16 16 O -0.17 -4.79 9.76 0.06 0.00 -4.79 16 17 C -0.39 -10.71 9.49 30.89 0.29 -10.41 16 18 H 0.09 2.29 5.20 -52.48 -0.27 2.01 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 21 Si 0.94 20.15 29.55 -169.99 -5.02 15.12 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 C -0.25 -5.27 9.06 -39.19 -0.36 -5.63 16 26 C 0.07 0.64 6.64 -3.32 -0.02 0.62 16 27 C 0.05 0.40 7.00 37.53 0.26 0.66 16 28 O -0.38 -3.69 10.39 -35.23 -0.37 -4.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.17 1.88 3.84 -56.49 -0.22 1.66 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.42 5.85 8.28 -40.82 -0.34 5.51 16 35 H 0.13 2.07 5.98 -52.49 -0.31 1.75 16 36 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.92 7.14 -51.93 -0.37 0.55 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -31.51 358.57 -6.60 -38.11 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.17 Total: 9.09 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.78 Total: -3.32 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.18 Total: -40.68 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.22 Total: -23.73 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.51 -6.60 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298900367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.568 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds