Wall clock time and date at job start Tue Mar 31 2020 18:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.50998 * 2 1 4 4 C 1.53295 * 109.51186 * 239.89866 * 2 1 3 5 5 N 1.47146 * 108.38404 * 187.72057 * 4 2 1 6 6 C 1.34777 * 120.98739 * 230.50962 * 5 4 2 7 7 O 1.21351 * 120.00421 * 186.70927 * 6 5 4 8 8 C 1.49357 * 119.99477 * 6.71429 * 6 5 4 9 9 O 1.21374 * 119.99859 * 6.73620 * 8 6 5 10 10 N 1.34777 * 119.99786 * 186.73713 * 8 6 5 11 11 C 1.39720 * 120.00161 * 175.24530 * 10 8 6 12 12 C 1.39026 * 120.03813 * 332.19870 * 11 10 8 13 13 C 1.38140 * 120.06105 * 180.02562 * 12 11 10 14 14 C 1.38184 * 120.14454 * 359.69976 * 13 12 11 15 15 C 1.38921 * 120.08081 * 0.55564 * 14 13 12 16 16 O 1.35745 * 120.02893 * 179.74597 * 15 14 13 17 17 C 1.34833 * 116.99761 * 185.42248 * 16 15 14 18 18 H 1.08005 * 120.00148 * 354.92595 * 17 16 15 19 19 C 1.38658 * 120.00200 * 174.93204 * 17 16 15 20 20 N 1.31555 * 119.99736 * 359.71986 * 19 17 16 21 21 Si 1.86795 * 120.00274 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47055 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47232 * 119.99654 * 21 19 17 24 24 H 1.48496 * 109.47258 * 240.00263 * 21 19 17 25 25 C 1.38762 * 119.93629 * 359.47209 * 15 14 13 26 26 C 1.47152 * 118.03245 * 50.78997 * 5 4 2 27 27 C 1.53712 * 108.16400 * 309.15540 * 26 5 4 28 28 O 1.42959 * 109.14685 * 52.53810 * 27 26 5 29 29 H 1.09000 * 109.47241 * 180.09878 * 1 2 3 30 30 H 1.09000 * 109.47286 * 300.10388 * 1 2 3 31 31 H 1.09007 * 109.47192 * 60.09863 * 1 2 3 32 32 H 1.09008 * 109.67828 * 68.00193 * 4 2 1 33 33 H 1.08995 * 109.71120 * 307.46517 * 4 2 1 34 34 H 0.97004 * 120.00156 * 355.24125 * 10 8 6 35 35 H 1.08002 * 119.96810 * 359.97438 * 12 11 10 36 36 H 1.08004 * 119.92584 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.95914 * 180.27931 * 14 13 12 38 38 H 0.96994 * 120.00328 * 180.02562 * 20 19 17 39 39 H 1.07993 * 120.06842 * 180.27492 * 25 15 14 40 40 H 1.08996 * 109.68427 * 68.93355 * 26 5 4 41 41 H 1.09004 * 109.68482 * 189.48927 * 26 5 4 42 42 H 1.09007 * 109.65590 * 292.57274 * 27 26 5 43 43 H 1.08993 * 109.48838 * 172.40037 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5013 -0.8746 -1.1346 6 6 4.3188 -0.5019 -2.1392 7 8 5.5062 -0.7441 -2.0769 8 6 3.7631 0.2093 -3.3292 9 8 2.6012 0.5602 -3.3386 10 7 4.5519 0.4614 -4.3926 11 6 4.0091 1.0369 -5.5443 12 6 2.6697 0.8354 -5.8580 13 6 2.1327 1.4038 -6.9968 14 6 2.9226 2.1789 -7.8242 15 6 4.2630 2.3798 -7.5193 16 8 5.0393 3.1372 -8.3356 17 6 6.3543 3.2002 -8.0444 18 1 6.7322 2.7300 -7.1485 19 6 7.2215 3.8686 -8.8951 20 7 6.7621 4.4367 -9.9892 21 14 9.0432 3.9565 -8.4915 22 1 9.3031 3.2389 -7.2175 23 1 9.8236 3.3234 -9.5848 24 1 9.4511 5.3774 -8.3507 25 6 4.8061 1.8101 -6.3765 26 6 4.0413 -1.4492 0.1078 27 6 3.4322 -0.6843 1.2939 28 8 2.0085 -0.6762 1.1652 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3634 0.5154 0.8890 31 1 -0.3634 0.5123 -0.8909 32 1 1.8022 -0.1393 -2.1378 33 1 1.5765 -1.7076 -1.3217 34 1 5.4964 0.2433 -4.3584 35 1 2.0488 0.2334 -5.2112 36 1 1.0919 1.2462 -7.2382 37 1 2.4986 2.6255 -8.7114 38 1 7.3687 4.9040 -10.5845 39 1 5.8467 1.9685 -6.1351 40 1 3.7736 -2.5039 0.1712 41 1 5.1262 -1.3440 0.1198 42 1 3.8033 0.3406 1.2986 43 1 3.7107 -1.1766 2.2256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298900367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:03 Heat of formation + Delta-G solvation = -102.798272 kcal Electronic energy + Delta-G solvation = -28451.363712 eV Core-core repulsion = 24270.045127 eV Total energy + Delta-G solvation = -4181.318585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.51744 -41.09211 -40.24405 -39.48116 -38.26644 -36.43704 -35.45843 -34.24771 -33.89632 -31.19453 -30.56131 -30.07417 -27.69162 -27.36569 -26.28731 -24.31285 -23.58946 -22.88615 -22.01888 -21.25181 -19.88815 -19.52797 -18.78773 -18.26533 -17.58605 -17.39409 -17.13571 -16.86380 -16.74985 -16.27912 -16.22766 -15.90197 -15.75790 -15.57006 -15.44224 -15.18884 -14.64802 -14.39913 -14.15241 -13.96789 -13.60710 -13.54498 -13.37571 -13.10434 -12.82121 -12.77133 -12.62955 -12.45433 -12.31060 -12.19364 -12.10335 -11.87809 -11.45545 -11.39603 -11.28394 -10.77866 -10.29277 -9.83702 -9.42077 -8.93820 -8.48052 -6.16658 -0.18298 0.57749 0.70067 0.98131 1.35728 1.43204 1.53067 1.87171 2.13683 2.16865 2.72479 2.80884 2.95761 3.14698 3.47597 3.61469 3.82617 3.99694 4.06222 4.08983 4.11181 4.27225 4.30772 4.38392 4.46351 4.55698 4.56724 4.65592 4.76568 4.85020 4.89790 4.97918 5.02507 5.04161 5.09947 5.24181 5.29335 5.38877 5.62631 5.65449 5.76740 5.99504 6.00512 6.10869 6.15485 6.44536 6.65908 6.96755 7.75258 8.74862 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.002631 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.700221 B =10640.084822 C =11805.040777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.055 0.945 4 C 0.022 3.978 5 N -0.581 5.581 6 C 0.515 3.485 7 O -0.537 6.537 8 C 0.512 3.488 9 O -0.495 6.495 10 N -0.628 5.628 11 C 0.177 3.823 12 C -0.196 4.196 13 C -0.046 4.046 14 C -0.208 4.208 15 C 0.135 3.865 16 O -0.224 6.224 17 C -0.413 4.413 18 H 0.102 0.898 19 C -0.020 4.020 20 N -0.918 5.918 21 Si 1.016 2.984 22 H -0.252 1.252 23 H -0.268 1.268 24 H -0.269 1.269 25 C -0.259 4.259 26 C 0.070 3.930 27 C 0.051 3.949 28 O -0.390 6.390 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.426 0.574 35 H 0.149 0.851 36 H 0.162 0.838 37 H 0.122 0.878 38 H 0.273 0.727 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 -12.499 21.765 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 H 0.073 0.927 4 C -0.099 4.099 5 N -0.314 5.314 6 C 0.297 3.703 7 O -0.414 6.414 8 C 0.295 3.705 9 O -0.372 6.372 10 N -0.273 5.273 11 C 0.083 3.917 12 C -0.217 4.217 13 C -0.065 4.065 14 C -0.227 4.227 15 C 0.084 3.916 16 O -0.130 6.130 17 C -0.489 4.489 18 H 0.119 0.881 19 C -0.218 4.218 20 N -0.555 5.555 21 Si 0.835 3.165 22 H -0.175 1.175 23 H -0.193 1.193 24 H -0.194 1.194 25 C -0.281 4.281 26 C -0.051 4.051 27 C -0.026 4.026 28 O -0.309 6.309 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.172 0.828 33 H 0.105 0.895 34 H 0.265 0.735 35 H 0.166 0.834 36 H 0.179 0.821 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.144 0.856 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.071 0.929 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.496 -12.266 21.621 26.610 hybrid contribution 1.731 0.345 -0.389 1.807 sum -7.765 -11.922 21.231 25.558 Atomic orbital electron populations 1.21719 0.90526 1.03756 1.03657 1.22519 0.96975 0.94703 0.84013 0.92731 1.24030 0.77224 1.04503 1.04150 1.48091 1.08403 1.59365 1.15509 1.19711 0.86224 0.80258 0.84067 1.90774 1.15974 1.55340 1.79342 1.20327 0.86162 0.80242 0.83749 1.90328 1.16579 1.50776 1.79484 1.43160 1.14102 1.58219 1.11835 1.17470 0.93709 0.94571 0.85964 1.21071 0.93737 1.06734 1.00132 1.20993 1.00051 0.93488 0.91955 1.20584 0.91440 1.06966 1.03732 1.19588 0.92144 0.90062 0.89821 1.83976 1.20410 1.59689 1.48972 1.21822 0.80329 1.37033 1.09719 0.88089 1.26528 1.05258 0.95386 0.94600 1.70174 1.37815 1.34626 1.12929 0.84568 0.73987 0.78810 0.79123 1.17517 1.19343 1.19449 1.20795 1.01592 1.06765 0.98904 1.22763 1.01058 0.99103 0.82202 1.23175 0.80560 1.00264 0.98622 1.87954 1.21498 1.77474 1.43951 0.91033 0.91113 0.89615 0.82815 0.89471 0.73514 0.83386 0.82058 0.86018 0.91783 0.85615 0.88523 0.87989 0.92887 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 71.98 0.69 -1.01 16 2 C 0.08 1.23 3.40 30.69 0.10 1.34 16 3 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.02 0.38 5.78 86.35 0.50 0.88 16 5 N -0.58 -11.53 3.01 -818.25 -2.47 -14.00 16 6 C 0.52 12.73 7.75 87.24 0.68 13.41 16 7 O -0.54 -15.21 16.00 -3.25 -0.05 -15.26 16 8 C 0.51 13.76 7.57 87.24 0.66 14.42 16 9 O -0.49 -13.55 10.42 -3.32 -0.03 -13.59 16 10 N -0.63 -18.47 5.34 -304.89 -1.63 -20.10 16 11 C 0.18 6.24 6.38 38.20 0.24 6.48 16 12 C -0.20 -6.37 8.69 22.44 0.19 -6.18 16 13 C -0.05 -1.50 10.03 22.23 0.22 -1.28 16 14 C -0.21 -8.44 9.99 22.42 0.22 -8.21 16 15 C 0.14 6.52 6.64 22.56 0.15 6.67 16 16 O -0.22 -13.12 9.76 -22.71 -0.22 -13.34 16 17 C -0.41 -23.48 9.49 67.92 0.64 -22.84 16 18 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 19 C -0.02 -1.10 5.49 84.83 0.47 -0.64 16 20 N -0.92 -55.40 13.67 21.61 0.30 -55.10 16 21 Si 1.02 42.28 29.55 68.60 2.03 44.30 16 22 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 25 C -0.26 -11.00 9.06 22.52 0.20 -10.79 16 26 C 0.07 1.05 6.64 86.49 0.57 1.63 16 27 C 0.05 0.66 7.00 72.22 0.51 1.16 16 28 O -0.39 -6.51 10.39 -148.98 -1.55 -8.06 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.16 3.12 3.84 -74.73 -0.29 2.83 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.43 11.52 8.28 -92.70 -0.77 10.75 16 35 H 0.15 4.26 5.98 -2.91 -0.02 4.24 16 36 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 37 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.13 5.39 5.64 -2.91 -0.02 5.38 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.61 7.14 -2.39 -0.02 1.59 16 42 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.10 358.57 2.46 -68.64 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.03 Total: 31.45 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.06 Total: -4.96 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -3.80 Total: -89.19 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -1.86 Total: -50.25 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -71.10 2.46 -68.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298900367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.154 kcal (2) G-P(sol) polarization free energy of solvation -71.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds