Wall clock time and date at job start Tue Mar 31 2020 17:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47056 * 2 1 4 4 O 1.33471 * 125.83402 * 270.30883 * 3 2 1 5 5 C 1.34889 * 109.90821 * 180.17509 * 4 3 2 6 6 C 1.46782 * 125.64638 * 179.82343 * 5 4 3 7 7 O 1.21677 * 119.99850 * 185.59622 * 6 5 4 8 8 N 1.34779 * 119.99717 * 5.59014 * 6 5 4 9 9 C 1.46504 * 120.00133 * 5.38467 * 8 6 5 10 10 C 1.50693 * 109.47135 * 274.71449 * 9 8 6 11 11 H 1.08002 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99966 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99908 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99824 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47333 * 90.00154 * 14 12 10 16 16 H 1.48507 * 109.46836 * 209.99872 * 14 12 10 17 17 H 1.48493 * 109.47094 * 329.99578 * 14 12 10 18 18 C 1.46499 * 119.99581 * 185.38466 * 8 6 5 19 19 C 1.53008 * 109.46823 * 268.66271 * 18 8 6 20 20 C 1.47202 * 109.46941 * 180.02562 * 19 18 8 21 21 N 8.97975 * 122.59386 * 130.42680 * 3 1 2 22 22 C 1.36032 * 108.70995 * 359.55531 * 5 4 3 23 23 C 1.37895 * 125.83592 * 89.99608 * 3 2 1 24 24 C 1.47345 * 126.78373 * 0.03714 * 23 3 2 25 25 O 1.21515 * 120.00007 * 359.97438 * 24 23 3 26 26 O 1.34748 * 119.99557 * 179.97438 * 24 23 3 27 27 C 1.45206 * 116.99967 * 179.97438 * 26 24 23 28 28 H 1.09002 * 109.47653 * 299.99814 * 1 2 3 29 29 H 1.08997 * 109.47474 * 60.00428 * 1 2 3 30 30 H 1.09007 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47558 * 239.99654 * 2 1 3 32 32 H 1.09004 * 109.47191 * 119.99757 * 2 1 3 33 33 H 1.08997 * 109.47076 * 34.71954 * 9 8 6 34 34 H 1.09000 * 109.46860 * 154.71791 * 9 8 6 35 35 H 0.97005 * 120.00304 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47540 * 28.66442 * 18 8 6 37 37 H 1.09003 * 109.46968 * 148.66644 * 18 8 6 38 38 H 1.09004 * 109.46954 * 300.00058 * 19 18 8 39 39 H 1.08994 * 109.47090 * 60.00199 * 19 18 8 40 40 H 1.07997 * 126.68890 * 180.30279 * 22 5 4 41 41 H 1.08993 * 109.47360 * 179.97438 * 27 26 24 42 42 H 1.09003 * 109.47251 * 300.00466 * 27 26 24 43 43 H 1.09007 * 109.46920 * 59.99762 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2872 2.1595 -1.0821 5 6 2.7251 3.3805 -0.7120 6 6 3.1084 4.4646 -1.6243 7 8 3.5866 5.4920 -1.1813 8 7 2.9307 4.3219 -2.9527 9 6 2.2480 3.1365 -3.4772 10 6 3.2422 2.0161 -3.6421 11 1 4.2788 2.1713 -3.3817 12 6 2.8284 0.7928 -4.1253 13 7 1.5663 0.6040 -4.4428 14 14 4.0607 -0.5963 -4.3289 15 1 4.1223 -1.3910 -3.0761 16 1 3.6378 -1.4726 -5.4508 17 1 5.4015 -0.0294 -4.6221 18 6 3.4202 5.3521 -3.8719 19 6 2.3141 6.3792 -4.1226 20 6 2.8058 7.4141 -5.0467 21 7 3.1856 8.2133 -5.7591 22 6 2.7471 3.4428 0.6468 23 6 2.3013 2.1820 1.1179 24 6 2.1552 1.7668 2.5241 25 8 1.7602 0.6487 2.7896 26 8 2.4597 2.6270 3.5156 27 6 2.2912 2.1503 4.8768 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.4667 2.8297 -2.7819 34 1 1.8024 3.3718 -4.4437 35 1 1.2751 -0.2567 -4.7824 36 1 4.2852 5.8495 -3.4331 37 1 3.7074 4.8897 -4.8163 38 1 1.4492 5.8818 -4.5615 39 1 2.0269 6.8416 -3.1783 40 1 3.0453 4.2881 1.2492 41 1 2.5709 2.9390 5.5752 42 1 1.2494 1.8737 5.0386 43 1 2.9275 1.2800 5.0383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338524700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:26 Heat of formation + Delta-G solvation = -81.621765 kcal Electronic energy + Delta-G solvation = -29250.145254 eV Core-core repulsion = 25069.744951 eV Total energy + Delta-G solvation = -4180.400303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.48569 -40.04953 -39.18689 -36.72893 -36.40128 -35.44639 -33.80170 -32.93645 -32.79200 -31.33919 -28.96740 -27.77403 -27.31806 -24.89320 -24.17662 -23.31396 -22.49439 -21.20361 -20.32856 -19.14295 -17.74691 -17.42208 -16.92915 -16.69965 -16.37244 -15.94230 -15.71940 -15.52026 -15.32279 -14.70280 -14.50966 -14.31005 -14.06427 -13.61241 -13.43630 -13.24009 -13.10644 -12.89367 -12.73069 -12.52011 -12.34626 -12.24476 -12.18110 -12.00544 -11.75267 -11.43067 -11.33957 -11.08670 -10.91580 -10.85966 -10.78515 -10.71855 -10.35417 -10.27093 -9.93218 -9.77024 -9.70730 -8.62901 -8.36493 -7.99667 -6.25092 -4.29999 1.32134 1.64422 2.67007 2.79691 2.90767 3.01766 3.14998 3.16772 3.25396 3.28810 3.57132 3.64303 4.26341 4.28305 4.71178 4.84850 4.99712 5.02717 5.09982 5.10202 5.19021 5.24737 5.35690 5.40374 5.46948 5.59925 5.60418 5.62622 5.82260 5.95213 6.09196 6.11988 6.15019 6.20486 6.35004 6.42200 6.46258 6.50375 7.06225 7.15712 7.35262 7.66437 7.67014 7.84880 7.94017 7.95263 8.52436 8.75019 9.35836 10.82190 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.004667 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.355305 B = 5998.304006 C = 8328.438225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C 0.118 3.882 4 O -0.081 6.081 5 C -0.061 4.061 6 C 0.601 3.399 7 O -0.547 6.547 8 N -0.585 5.585 9 C 0.233 3.767 10 C -0.529 4.529 11 H 0.060 0.940 12 C 0.073 3.927 13 N -0.887 5.887 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.127 3.873 19 C -0.046 4.046 20 C 0.221 3.779 21 N -0.449 5.449 22 C -0.094 4.094 23 C -0.257 4.257 24 C 0.545 3.455 25 O -0.513 6.513 26 O -0.353 6.353 27 C 0.038 3.962 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.165 0.835 41 H 0.100 0.900 42 H 0.062 0.938 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 0.824 11.416 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 C 0.060 3.940 4 O 0.029 5.971 5 C -0.113 4.113 6 C 0.389 3.611 7 O -0.429 6.429 8 N -0.314 5.314 9 C 0.114 3.886 10 C -0.567 4.567 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.525 5.525 14 Si 0.714 3.286 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.198 1.198 18 C 0.002 3.998 19 C -0.087 4.087 20 C -0.097 4.097 21 N -0.126 5.126 22 C -0.114 4.114 23 C -0.259 4.259 24 C 0.392 3.608 25 O -0.404 6.404 26 O -0.270 6.270 27 C -0.056 4.056 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.183 0.817 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.109 2.011 10.233 10.640 hybrid contribution 0.493 -1.338 0.409 1.484 sum -1.616 0.672 10.642 10.785 Atomic orbital electron populations 1.21646 0.93024 1.02577 1.02488 1.20460 0.97249 0.86503 1.05323 1.23641 0.92628 0.94319 0.83444 1.84754 1.60225 1.21028 1.31126 1.21830 1.09621 0.86192 0.93679 1.16636 0.78476 0.84136 0.81840 1.90801 1.47218 1.27818 1.77020 1.48166 1.56282 1.22568 1.04414 1.19715 0.92867 0.80379 0.95669 1.21332 0.95193 0.96121 1.44091 0.92220 1.24798 0.95122 0.98198 0.94965 1.69899 1.14637 1.24520 1.43426 0.86671 0.81741 0.82174 0.78017 1.20415 1.21040 1.19815 1.21204 0.95136 0.88268 0.95183 1.19779 1.00744 0.91690 0.96536 1.29069 0.93236 0.93865 0.93539 1.81188 1.09141 1.11300 1.10970 1.21798 0.99441 0.97394 0.92817 1.19232 1.19220 0.97162 0.90292 1.20002 0.73343 0.82323 0.85141 1.90796 1.44026 1.20958 1.84593 1.86582 1.79579 1.44462 1.16344 1.23236 1.02280 1.01059 0.79005 0.92578 0.91537 0.91502 0.88736 0.87521 0.93360 0.93803 0.92536 0.89674 0.88902 0.86859 0.87082 0.81712 0.88200 0.91945 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 37.15 0.37 -1.57 16 2 C -0.06 -0.90 5.94 -27.89 -0.17 -1.07 16 3 C 0.12 2.06 6.67 -34.43 -0.23 1.83 16 4 O -0.08 -1.58 6.27 6.24 0.04 -1.54 16 5 C -0.06 -1.14 6.63 -36.92 -0.24 -1.38 16 6 C 0.60 11.27 7.60 -12.81 -0.10 11.17 16 7 O -0.55 -10.68 16.47 5.21 0.09 -10.59 16 8 N -0.59 -10.50 2.47 -176.56 -0.44 -10.94 16 9 C 0.23 4.81 4.75 -5.20 -0.02 4.78 16 10 C -0.53 -12.37 7.81 -34.44 -0.27 -12.64 16 11 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 12 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -22.09 13.29 55.43 0.74 -21.35 16 14 Si 0.89 19.30 29.54 -169.99 -5.02 14.28 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 18 C 0.13 1.88 5.32 -4.04 -0.02 1.86 16 19 C -0.05 -0.55 6.03 -29.51 -0.18 -0.73 16 20 C 0.22 3.00 15.43 -20.76 -0.32 2.68 16 21 N -0.45 -7.18 18.54 42.15 0.78 -6.40 16 22 C -0.09 -1.56 10.45 -39.02 -0.41 -1.97 16 23 C -0.26 -4.23 6.16 -104.96 -0.65 -4.88 16 24 C 0.55 8.41 7.96 34.44 0.27 8.68 16 25 O -0.51 -8.34 14.63 -19.28 -0.28 -8.62 16 26 O -0.35 -4.73 10.43 -40.62 -0.42 -5.15 16 27 C 0.04 0.35 10.57 101.05 1.07 1.42 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.11 1.57 6.48 -51.93 -0.34 1.24 16 33 H 0.05 1.07 5.90 -51.93 -0.31 0.76 16 34 H 0.04 0.92 8.04 -51.93 -0.42 0.51 16 35 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 36 H 0.08 1.27 7.46 -51.93 -0.39 0.88 16 37 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.17 2.47 8.06 -52.49 -0.42 2.04 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -28.43 383.02 -5.38 -33.81 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.64 Total: 0.90 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -0.99 Total: 9.83 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 1.08 Total: -38.69 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.58 Total: -25.91 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.43 -5.38 -33.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338524700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.810 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds