Wall clock time and date at job start Tue Mar 31 2020 17:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47056 * 2 1 4 4 O 1.33471 * 125.83402 * 270.30883 * 3 2 1 5 5 C 1.34889 * 109.90821 * 180.17509 * 4 3 2 6 6 C 1.46782 * 125.64638 * 179.82343 * 5 4 3 7 7 O 1.21677 * 119.99850 * 185.59622 * 6 5 4 8 8 N 1.34779 * 119.99717 * 5.59014 * 6 5 4 9 9 C 1.46504 * 120.00133 * 5.38467 * 8 6 5 10 10 C 1.50693 * 109.47135 * 274.71449 * 9 8 6 11 11 H 1.08002 * 120.00018 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99966 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99908 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99824 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47333 * 90.00154 * 14 12 10 16 16 H 1.48507 * 109.46836 * 209.99872 * 14 12 10 17 17 H 1.48493 * 109.47094 * 329.99578 * 14 12 10 18 18 C 1.46499 * 119.99581 * 185.38466 * 8 6 5 19 19 C 1.53008 * 109.46823 * 268.66271 * 18 8 6 20 20 C 1.47202 * 109.46941 * 180.02562 * 19 18 8 21 21 N 8.97975 * 122.59386 * 130.42680 * 3 1 2 22 22 C 1.36032 * 108.70995 * 359.55531 * 5 4 3 23 23 C 1.37895 * 125.83592 * 89.99608 * 3 2 1 24 24 C 1.47345 * 126.78373 * 0.03714 * 23 3 2 25 25 O 1.21515 * 120.00007 * 359.97438 * 24 23 3 26 26 O 1.34748 * 119.99557 * 179.97438 * 24 23 3 27 27 C 1.45206 * 116.99967 * 179.97438 * 26 24 23 28 28 H 1.09002 * 109.47653 * 299.99814 * 1 2 3 29 29 H 1.08997 * 109.47474 * 60.00428 * 1 2 3 30 30 H 1.09007 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47558 * 239.99654 * 2 1 3 32 32 H 1.09004 * 109.47191 * 119.99757 * 2 1 3 33 33 H 1.08997 * 109.47076 * 34.71954 * 9 8 6 34 34 H 1.09000 * 109.46860 * 154.71791 * 9 8 6 35 35 H 0.97005 * 120.00304 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.47540 * 28.66442 * 18 8 6 37 37 H 1.09003 * 109.46968 * 148.66644 * 18 8 6 38 38 H 1.09004 * 109.46954 * 300.00058 * 19 18 8 39 39 H 1.08994 * 109.47090 * 60.00199 * 19 18 8 40 40 H 1.07997 * 126.68890 * 180.30279 * 22 5 4 41 41 H 1.08993 * 109.47360 * 179.97438 * 27 26 24 42 42 H 1.09003 * 109.47251 * 300.00466 * 27 26 24 43 43 H 1.09007 * 109.46920 * 59.99762 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2872 2.1595 -1.0821 5 6 2.7251 3.3805 -0.7120 6 6 3.1084 4.4646 -1.6243 7 8 3.5866 5.4920 -1.1813 8 7 2.9307 4.3219 -2.9527 9 6 2.2480 3.1365 -3.4772 10 6 3.2422 2.0161 -3.6421 11 1 4.2788 2.1713 -3.3817 12 6 2.8284 0.7928 -4.1253 13 7 1.5663 0.6040 -4.4428 14 14 4.0607 -0.5963 -4.3289 15 1 4.1223 -1.3910 -3.0761 16 1 3.6378 -1.4726 -5.4508 17 1 5.4015 -0.0294 -4.6221 18 6 3.4202 5.3521 -3.8719 19 6 2.3141 6.3792 -4.1226 20 6 2.8058 7.4141 -5.0467 21 7 3.1856 8.2133 -5.7591 22 6 2.7471 3.4428 0.6468 23 6 2.3013 2.1820 1.1179 24 6 2.1552 1.7668 2.5241 25 8 1.7602 0.6487 2.7896 26 8 2.4597 2.6270 3.5156 27 6 2.2912 2.1503 4.8768 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.4667 2.8297 -2.7819 34 1 1.8024 3.3718 -4.4437 35 1 1.2751 -0.2567 -4.7824 36 1 4.2852 5.8495 -3.4331 37 1 3.7074 4.8897 -4.8163 38 1 1.4492 5.8818 -4.5615 39 1 2.0269 6.8416 -3.1783 40 1 3.0453 4.2881 1.2492 41 1 2.5709 2.9390 5.5752 42 1 1.2494 1.8737 5.0386 43 1 2.9275 1.2800 5.0383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338524700.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:25 Heat of formation + Delta-G solvation = -95.360424 kcal Electronic energy + Delta-G solvation = -29250.741007 eV Core-core repulsion = 25069.744951 eV Total energy + Delta-G solvation = -4180.996056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.85180 -41.19271 -40.60914 -37.94451 -37.51295 -36.89372 -35.04681 -34.65341 -34.11636 -32.66711 -30.23546 -29.00139 -28.66755 -26.14689 -25.37880 -24.97144 -23.77105 -22.47403 -21.66495 -20.44383 -19.08989 -18.68020 -18.32014 -18.08985 -17.66978 -17.26459 -16.99139 -16.79703 -16.69153 -16.22477 -15.78053 -15.69425 -15.29382 -14.91994 -14.55413 -14.38849 -14.26248 -14.24698 -14.11706 -14.02961 -13.62046 -13.50390 -13.32207 -13.20440 -12.92855 -12.91447 -12.71656 -12.53308 -12.49704 -12.13496 -12.07665 -11.81221 -11.76174 -11.66849 -11.54491 -11.22380 -11.10060 -10.47411 -9.79152 -9.44836 -8.09949 -6.18174 -0.01544 0.32278 1.42020 1.47376 1.50099 1.53303 1.64766 1.78982 1.80575 1.89638 2.20503 2.25560 2.48428 3.14102 3.23655 3.39751 3.55712 3.80348 4.03684 4.12053 4.13502 4.28797 4.31464 4.35826 4.39579 4.40352 4.53268 4.55725 4.76224 4.81807 4.88083 4.91140 4.96575 4.98335 5.03813 5.18767 5.24272 5.35335 5.37035 5.65481 5.80332 5.95284 6.15434 6.40390 6.56728 6.70292 6.87303 7.10768 7.49671 8.96212 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.009079 B = 0.004667 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.355305 B = 5998.304006 C = 8328.438225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 C 0.108 3.892 4 O -0.104 6.104 5 C -0.088 4.088 6 C 0.600 3.400 7 O -0.557 6.557 8 N -0.584 5.584 9 C 0.248 3.752 10 C -0.528 4.528 11 H 0.045 0.955 12 C 0.041 3.959 13 N -0.907 5.907 14 Si 0.927 3.073 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.278 1.278 18 C 0.123 3.877 19 C -0.032 4.032 20 C 0.246 3.754 21 N -0.489 5.489 22 C -0.079 4.079 23 C -0.257 4.257 24 C 0.548 3.452 25 O -0.524 6.524 26 O -0.357 6.357 27 C 0.030 3.970 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.182 0.818 41 H 0.133 0.867 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 0.818 12.801 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C 0.050 3.950 4 O 0.005 5.995 5 C -0.139 4.139 6 C 0.389 3.611 7 O -0.440 6.440 8 N -0.313 5.313 9 C 0.128 3.872 10 C -0.567 4.567 11 H 0.064 0.936 12 C -0.160 4.160 13 N -0.547 5.547 14 Si 0.754 3.246 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.203 1.203 18 C -0.001 4.001 19 C -0.073 4.073 20 C -0.071 4.071 21 N -0.167 5.167 22 C -0.099 4.099 23 C -0.259 4.259 24 C 0.395 3.605 25 O -0.416 6.416 26 O -0.273 6.273 27 C -0.063 4.063 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.199 0.801 41 H 0.151 0.849 42 H 0.085 0.915 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.274 2.023 11.627 12.019 hybrid contribution 0.570 -1.344 0.104 1.464 sum -1.705 0.679 11.731 11.874 Atomic orbital electron populations 1.21602 0.91741 1.03787 1.01866 1.20532 0.98284 0.85468 1.05022 1.24065 0.92582 0.94981 0.83412 1.84701 1.60949 1.21600 1.32272 1.21955 1.11291 0.86268 0.94431 1.16692 0.78263 0.84130 0.82009 1.90785 1.47853 1.28206 1.77149 1.48069 1.56097 1.22455 1.04656 1.19358 0.92046 0.80629 0.95167 1.21449 0.94920 0.97040 1.43308 0.93649 1.25233 0.96061 0.99627 0.95106 1.69954 1.15516 1.24860 1.44348 0.86033 0.80110 0.80510 0.77924 1.20106 1.20957 1.20272 1.21328 0.96047 0.88169 0.94543 1.19709 1.00050 0.90597 0.96895 1.29166 0.92062 0.93193 0.92681 1.81219 1.10386 1.12713 1.12415 1.22003 0.97919 0.97777 0.92220 1.19386 1.18644 0.96893 0.91025 1.19803 0.73223 0.82331 0.85137 1.90785 1.44594 1.21411 1.84779 1.86563 1.79019 1.44124 1.17637 1.23616 1.02871 1.02598 0.77211 0.92237 0.92985 0.89405 0.89948 0.86692 0.94528 0.93965 0.92564 0.89739 0.88824 0.85076 0.85817 0.80073 0.84905 0.91469 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.89 71.98 0.71 -2.85 16 2 C -0.06 -1.72 5.94 29.85 0.18 -1.54 16 3 C 0.11 3.73 6.67 25.60 0.17 3.90 16 4 O -0.10 -4.09 6.27 -0.59 0.00 -4.09 16 5 C -0.09 -3.25 6.63 23.99 0.16 -3.09 16 6 C 0.60 22.20 7.60 86.48 0.66 22.86 16 7 O -0.56 -21.21 16.47 -4.27 -0.07 -21.28 16 8 N -0.58 -20.66 2.47 -830.75 -2.05 -22.71 16 9 C 0.25 10.23 4.75 85.63 0.41 10.64 16 10 C -0.53 -24.78 7.81 25.60 0.20 -24.58 16 11 H 0.05 2.23 7.81 -2.91 -0.02 2.21 16 12 C 0.04 1.97 5.46 84.66 0.46 2.43 16 13 N -0.91 -45.21 13.29 21.45 0.28 -44.92 16 14 Si 0.93 39.40 29.54 68.60 2.03 41.42 16 15 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.12 3.51 5.32 86.38 0.46 3.97 16 19 C -0.03 -0.70 6.03 28.79 0.17 -0.53 16 20 C 0.25 6.35 15.43 89.44 1.38 7.74 16 21 N -0.49 -15.28 18.54 20.01 0.37 -14.91 16 22 C -0.08 -2.55 10.45 22.63 0.24 -2.31 16 23 C -0.26 -8.26 6.16 -20.09 -0.12 -8.38 16 24 C 0.55 16.09 7.96 70.22 0.56 16.65 16 25 O -0.52 -16.23 14.63 19.79 0.29 -15.95 16 26 O -0.36 -8.80 10.43 -56.59 -0.59 -9.39 16 27 C 0.03 0.48 10.57 113.37 1.20 1.67 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.12 3.30 6.48 -2.38 -0.02 3.28 16 33 H 0.04 1.63 5.90 -2.39 -0.01 1.62 16 34 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 35 H 0.27 12.74 8.31 -92.70 -0.77 11.97 16 36 H 0.08 2.44 7.46 -2.39 -0.02 2.42 16 37 H 0.09 2.65 8.08 -2.39 -0.02 2.63 16 38 H 0.13 2.54 8.14 -2.38 -0.02 2.52 16 39 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.18 5.13 8.06 -2.91 -0.02 5.11 16 41 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -59.68 383.02 8.13 -51.56 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.04 Total: 13.68 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 6.83 Total: 26.58 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.39 Total: -82.53 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.37 Total: -50.70 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Total: -59.68 8.13 -51.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338524700.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.804 kcal (2) G-P(sol) polarization free energy of solvation -59.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds