Wall clock time and date at job start Tue Mar 31 2020 17:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46842 * 2 1 4 4 N 1.46506 * 109.46705 * 179.97438 * 3 2 1 5 5 C 1.36975 * 119.99819 * 260.63410 * 4 3 2 6 6 H 1.08004 * 119.99888 * 214.85017 * 5 4 3 7 7 C 1.38981 * 120.00139 * 34.85079 * 5 4 3 8 8 N 1.31410 * 119.99733 * 347.89401 * 7 5 4 9 9 Si 1.86798 * 120.00202 * 167.88769 * 7 5 4 10 10 H 1.48504 * 109.46727 * 60.00281 * 9 7 5 11 11 H 1.48496 * 109.47095 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46993 * 300.00472 * 9 7 5 13 13 C 1.34777 * 120.00006 * 80.63782 * 4 3 2 14 14 O 1.21625 * 119.99991 * 6.57892 * 13 4 3 15 15 C 1.47340 * 119.99676 * 186.58153 * 13 4 3 16 16 C 1.41385 * 126.41744 * 7.88164 * 15 13 4 17 17 N 1.30457 * 108.09365 * 179.97438 * 16 15 13 18 18 N 1.39935 * 108.93355 * 0.02562 * 17 16 15 19 19 C 1.39359 * 125.77426 * 179.97438 * 18 17 16 20 20 N 1.29573 * 124.94231 * 0.24997 * 19 18 17 21 21 C 1.31837 * 116.97399 * 180.19995 * 20 19 18 22 22 C 1.50702 * 122.72131 * 179.82640 * 21 20 19 23 23 C 1.52999 * 109.47305 * 304.70904 * 22 21 20 24 24 C 1.33579 * 114.55424 * 359.56357 * 21 20 19 25 25 S 1.70971 * 124.93744 * 180.02562 * 19 18 17 26 26 C 1.34674 * 108.45025 * 0.22715 * 18 17 16 27 27 H 1.09001 * 109.47100 * 60.00103 * 1 2 3 28 28 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47462 * 300.00768 * 1 2 3 30 30 H 1.08997 * 109.46945 * 239.99661 * 2 1 3 31 31 H 1.08998 * 109.47030 * 119.99373 * 2 1 3 32 32 H 1.08997 * 109.47628 * 60.00079 * 3 2 1 33 33 H 1.09003 * 109.47612 * 299.99205 * 3 2 1 34 34 H 0.97002 * 120.00263 * 180.02562 * 8 7 5 35 35 H 1.08006 * 125.95477 * 0.02562 * 16 15 13 36 36 H 1.08996 * 109.46730 * 64.71197 * 22 21 20 37 37 H 1.09001 * 109.46558 * 184.71197 * 22 21 20 38 38 H 1.08998 * 109.47117 * 300.00248 * 23 22 21 39 39 H 1.09003 * 109.46717 * 60.00219 * 23 22 21 40 40 H 1.08997 * 109.47233 * 179.97438 * 23 22 21 41 41 H 1.08001 * 125.98380 * 180.25085 * 24 21 20 42 42 H 1.08003 * 126.32370 * 179.77938 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.6357 1.1713 6 1 5.1241 2.1767 1.1674 7 6 3.6809 1.1356 2.3642 8 7 2.4453 0.6911 2.4166 9 14 4.7537 1.0951 3.8928 10 1 5.1796 2.4759 4.2353 11 1 3.9821 0.5207 5.0240 12 1 5.9522 0.2571 3.6343 13 6 4.1794 1.2524 -1.1507 14 8 3.5777 1.2006 -2.2065 15 6 5.6455 1.1074 -1.1304 16 6 6.4614 0.9899 0.0183 17 7 7.7006 0.8800 -0.3745 18 7 7.7391 0.9217 -1.7727 19 6 8.8863 0.8343 -2.5591 20 7 10.0908 0.6961 -2.1018 21 6 11.0639 0.6340 -2.9891 22 6 12.5116 0.4781 -2.6008 23 6 12.9032 1.5961 -1.6325 24 6 10.6618 0.7149 -4.2604 25 16 8.9086 0.8883 -4.2678 26 6 6.4805 1.0662 -2.2296 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 2.0903 0.3423 3.2492 35 1 6.1185 0.9901 1.0425 36 1 12.6562 -0.4882 -2.1177 37 1 13.1352 0.5353 -3.4930 38 1 12.7586 2.5624 -2.1157 39 1 12.2796 1.5390 -0.7403 40 1 13.9502 1.4831 -1.3514 41 1 11.2998 0.6801 -5.1311 42 1 6.1795 1.1344 -3.2646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342804776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:15 Heat of formation + Delta-G solvation = 110.432348 kcal Electronic energy + Delta-G solvation = -25996.507761 eV Core-core repulsion = 22299.481171 eV Total energy + Delta-G solvation = -3697.026590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22707 -39.93917 -38.30952 -35.19082 -34.27737 -32.62694 -32.08209 -31.40478 -29.93004 -29.10630 -26.27546 -25.24740 -24.72044 -23.66746 -22.00328 -21.15332 -20.28859 -19.67308 -18.88458 -18.54268 -17.43573 -16.62735 -15.85039 -15.64228 -14.96879 -14.59343 -14.55577 -14.35347 -14.03790 -13.83400 -13.66977 -13.53492 -13.32607 -12.85088 -12.70386 -12.41645 -12.12425 -12.00444 -11.71033 -11.45115 -11.34100 -11.12068 -11.04786 -10.77774 -10.66779 -10.54506 -10.41218 -10.23440 -10.05446 -9.83494 -9.62023 -9.47752 -8.81549 -8.76028 -8.58669 -8.01245 -7.55822 -6.46846 -4.15816 0.28457 0.68524 1.43544 1.91631 2.41067 2.73081 2.93995 3.10063 3.14576 3.17977 3.96632 4.02537 4.36469 4.65956 4.74970 4.92065 4.95270 5.08098 5.09171 5.18494 5.34363 5.49332 5.66978 5.74514 5.87422 5.90929 5.96112 6.11222 6.15702 6.17483 6.33437 6.48528 6.71643 6.88916 6.94447 6.99128 7.01484 7.07430 7.21419 7.47259 7.55516 7.76152 7.82719 7.95519 8.35633 8.92917 9.43841 9.85169 10.49036 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.003266 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.021651 B = 8572.232886 C =10111.745619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.145 3.855 4 N -0.431 5.431 5 C -0.351 4.351 6 H 0.102 0.898 7 C 0.049 3.951 8 N -0.847 5.847 9 Si 0.905 3.095 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.266 1.266 13 C 0.532 3.468 14 O -0.608 6.608 15 C -0.202 4.202 16 C 0.095 3.905 17 N -0.282 5.282 18 N -0.308 5.308 19 C 0.296 3.704 20 N -0.476 5.476 21 C 0.099 3.901 22 C -0.046 4.046 23 C -0.146 4.146 24 C -0.280 4.280 25 S 0.158 5.842 26 C 0.078 3.922 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.272 0.728 35 H 0.229 0.771 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.183 0.817 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.755 -0.236 -8.346 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.023 3.977 4 N -0.147 5.147 5 C -0.479 4.479 6 H 0.119 0.881 7 C -0.158 4.158 8 N -0.482 5.482 9 Si 0.731 3.269 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.190 1.190 13 C 0.321 3.679 14 O -0.495 6.495 15 C -0.216 4.216 16 C -0.095 4.095 17 N -0.099 5.099 18 N -0.087 5.087 19 C -0.071 4.071 20 N -0.195 5.195 21 C -0.034 4.034 22 C -0.086 4.086 23 C -0.204 4.204 24 C -0.420 4.420 25 S 0.409 5.591 26 C -0.066 4.066 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.200 0.800 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 12.811 -0.392 -8.562 15.414 hybrid contribution 0.400 -0.070 0.871 0.961 sum 13.211 -0.462 -7.691 15.293 Atomic orbital electron populations 1.21578 0.97623 0.99721 1.00388 1.21917 0.93750 0.98593 1.02123 1.21192 0.79907 0.96671 0.99954 1.43416 1.05451 1.59924 1.05952 1.19722 1.07549 1.35868 0.84722 0.88059 1.25474 0.95990 0.94950 0.99399 1.69997 1.12757 1.37985 1.27490 0.86334 0.80330 0.79326 0.80949 1.19428 1.20466 1.19048 1.17079 0.84566 0.81761 0.84509 1.90620 1.69699 1.58270 1.30942 1.20683 0.96046 1.13496 0.91363 1.26035 0.88058 0.93027 1.02403 1.77624 1.21869 1.24600 0.85799 1.44732 1.01884 1.56544 1.05537 1.22972 0.88558 1.03189 0.92345 1.65934 0.96956 1.19230 1.37360 1.20071 0.96215 0.99865 0.87285 1.20163 0.87343 1.00728 1.00360 1.21688 1.01181 0.97640 0.99895 1.26782 0.96330 1.17015 1.01904 1.84114 1.04873 1.69613 1.00550 1.22873 0.81848 1.01247 1.00605 0.94450 0.94378 0.92975 0.94926 0.88280 0.88872 0.94772 0.91723 0.75535 0.89937 0.90079 0.92845 0.91413 0.92227 0.79965 0.79744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.91 37.16 0.37 -2.14 16 2 C -0.13 -2.79 5.66 -26.73 -0.15 -2.94 16 3 C 0.15 3.42 4.51 -4.04 -0.02 3.40 16 4 N -0.43 -10.51 2.64 -116.05 -0.31 -10.82 16 5 C -0.35 -8.25 6.90 -14.98 -0.10 -8.35 16 6 H 0.10 2.28 5.32 -52.48 -0.28 2.00 16 7 C 0.05 1.13 5.40 -17.46 -0.09 1.03 16 8 N -0.85 -19.86 8.10 55.50 0.45 -19.41 16 9 Si 0.91 17.95 29.14 -169.99 -4.95 13.00 16 10 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 11 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 C 0.53 12.94 7.52 -12.56 -0.09 12.85 16 14 O -0.61 -15.86 16.61 5.26 0.09 -15.77 16 15 C -0.20 -4.35 5.98 -105.05 -0.63 -4.98 16 16 C 0.10 1.99 10.00 -16.94 -0.17 1.82 16 17 N -0.28 -5.86 12.44 30.88 0.38 -5.47 16 18 N -0.31 -5.80 3.75 -13.33 -0.05 -5.85 16 19 C 0.30 4.83 8.13 -87.04 -0.71 4.12 16 20 N -0.48 -7.70 10.38 -11.19 -0.12 -7.81 16 21 C 0.10 1.21 6.07 -84.22 -0.51 0.70 16 22 C -0.05 -0.42 6.43 -27.88 -0.18 -0.60 16 23 C -0.15 -1.39 9.82 37.16 0.36 -1.02 16 24 C -0.28 -2.84 11.06 29.10 0.32 -2.52 16 25 S 0.16 1.86 22.56 -107.50 -2.42 -0.57 16 26 C 0.08 1.46 10.84 -16.35 -0.18 1.28 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 2.37 5.82 -51.93 -0.30 2.07 16 32 H 0.09 2.25 6.47 -51.93 -0.34 1.92 16 33 H 0.03 0.81 7.63 -51.93 -0.40 0.41 16 34 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 35 H 0.23 4.70 4.61 -52.48 -0.24 4.46 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.51 8.03 -51.93 -0.42 0.09 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.19 2.98 7.91 -52.48 -0.42 2.56 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -28.82 362.37 -8.57 -37.40 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.32 Total: 7.20 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.78 Total: 2.65 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.36 Total: -49.36 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.95 Total: 13.00 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.42 Total: -0.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.82 -8.57 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342804776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.828 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds