Wall clock time and date at job start Tue Mar 31 2020 17:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46842 * 2 1 4 4 N 1.46506 * 109.46705 * 179.97438 * 3 2 1 5 5 C 1.36975 * 119.99819 * 260.63410 * 4 3 2 6 6 H 1.08004 * 119.99888 * 214.85017 * 5 4 3 7 7 C 1.38981 * 120.00139 * 34.85079 * 5 4 3 8 8 N 1.31410 * 119.99733 * 347.89401 * 7 5 4 9 9 Si 1.86798 * 120.00202 * 167.88769 * 7 5 4 10 10 H 1.48504 * 109.46727 * 60.00281 * 9 7 5 11 11 H 1.48496 * 109.47095 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46993 * 300.00472 * 9 7 5 13 13 C 1.34777 * 120.00006 * 80.63782 * 4 3 2 14 14 O 1.21625 * 119.99991 * 6.57892 * 13 4 3 15 15 C 1.47340 * 119.99676 * 186.58153 * 13 4 3 16 16 C 1.41385 * 126.41744 * 7.88164 * 15 13 4 17 17 N 1.30457 * 108.09365 * 179.97438 * 16 15 13 18 18 N 1.39935 * 108.93355 * 0.02562 * 17 16 15 19 19 C 1.39359 * 125.77426 * 179.97438 * 18 17 16 20 20 N 1.29573 * 124.94231 * 0.24997 * 19 18 17 21 21 C 1.31837 * 116.97399 * 180.19995 * 20 19 18 22 22 C 1.50702 * 122.72131 * 179.82640 * 21 20 19 23 23 C 1.52999 * 109.47305 * 304.70904 * 22 21 20 24 24 C 1.33579 * 114.55424 * 359.56357 * 21 20 19 25 25 S 1.70971 * 124.93744 * 180.02562 * 19 18 17 26 26 C 1.34674 * 108.45025 * 0.22715 * 18 17 16 27 27 H 1.09001 * 109.47100 * 60.00103 * 1 2 3 28 28 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47462 * 300.00768 * 1 2 3 30 30 H 1.08997 * 109.46945 * 239.99661 * 2 1 3 31 31 H 1.08998 * 109.47030 * 119.99373 * 2 1 3 32 32 H 1.08997 * 109.47628 * 60.00079 * 3 2 1 33 33 H 1.09003 * 109.47612 * 299.99205 * 3 2 1 34 34 H 0.97002 * 120.00263 * 180.02562 * 8 7 5 35 35 H 1.08006 * 125.95477 * 0.02562 * 16 15 13 36 36 H 1.08996 * 109.46730 * 64.71197 * 22 21 20 37 37 H 1.09001 * 109.46558 * 184.71197 * 22 21 20 38 38 H 1.08998 * 109.47117 * 300.00248 * 23 22 21 39 39 H 1.09003 * 109.46717 * 60.00219 * 23 22 21 40 40 H 1.08997 * 109.47233 * 179.97438 * 23 22 21 41 41 H 1.08001 * 125.98380 * 180.25085 * 24 21 20 42 42 H 1.08003 * 126.32370 * 179.77938 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1893 1.6357 1.1713 6 1 5.1241 2.1767 1.1674 7 6 3.6809 1.1356 2.3642 8 7 2.4453 0.6911 2.4166 9 14 4.7537 1.0951 3.8928 10 1 5.1796 2.4759 4.2353 11 1 3.9821 0.5207 5.0240 12 1 5.9522 0.2571 3.6343 13 6 4.1794 1.2524 -1.1507 14 8 3.5777 1.2006 -2.2065 15 6 5.6455 1.1074 -1.1304 16 6 6.4614 0.9899 0.0183 17 7 7.7006 0.8800 -0.3745 18 7 7.7391 0.9217 -1.7727 19 6 8.8863 0.8343 -2.5591 20 7 10.0908 0.6961 -2.1018 21 6 11.0639 0.6340 -2.9891 22 6 12.5116 0.4781 -2.6008 23 6 12.9032 1.5961 -1.6325 24 6 10.6618 0.7149 -4.2604 25 16 8.9086 0.8883 -4.2678 26 6 6.4805 1.0662 -2.2296 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 2.0903 0.3423 3.2492 35 1 6.1185 0.9901 1.0425 36 1 12.6562 -0.4882 -2.1177 37 1 13.1352 0.5353 -3.4930 38 1 12.7586 2.5624 -2.1157 39 1 12.2796 1.5390 -0.7403 40 1 13.9502 1.4831 -1.3514 41 1 11.2998 0.6801 -5.1311 42 1 6.1795 1.1344 -3.2646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342804776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:14 Heat of formation + Delta-G solvation = 95.058103 kcal Electronic energy + Delta-G solvation = -25997.174438 eV Core-core repulsion = 22299.481171 eV Total energy + Delta-G solvation = -3697.693267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.69533 -41.03121 -40.10177 -37.04991 -35.37490 -34.16785 -33.52578 -33.06657 -31.40607 -30.19289 -27.89977 -26.75224 -26.15840 -24.67882 -23.56299 -22.48184 -21.92829 -21.22484 -20.31735 -19.84546 -18.87998 -17.99213 -17.30572 -17.06825 -16.39840 -16.03191 -15.97755 -15.84335 -15.36126 -15.28763 -15.11481 -14.73214 -14.58147 -14.45779 -13.99733 -13.79825 -13.56147 -13.41982 -13.03316 -12.82524 -12.72610 -12.46296 -12.26607 -12.24511 -12.20529 -12.02493 -11.92136 -11.87261 -11.41610 -11.36983 -10.92609 -10.60262 -10.54924 -10.42417 -10.19013 -9.46052 -9.24515 -8.24639 -5.99451 -0.83769 -0.35467 0.49150 0.59150 1.13327 1.18586 1.49716 1.53957 1.57995 1.74826 2.29090 2.57744 2.82715 3.09076 3.15701 3.67437 3.88191 4.02509 4.16627 4.25768 4.32144 4.37767 4.46468 4.53152 4.56193 4.59623 4.71237 4.77549 4.98799 4.99061 5.05310 5.15777 5.15929 5.28016 5.34704 5.36858 5.41048 5.44147 5.60683 5.64377 5.92261 5.99917 6.28706 6.52863 6.67407 7.11127 7.59484 8.01047 8.71792 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.003266 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.021651 B = 8572.232886 C =10111.745619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.116 4.116 3 C 0.148 3.852 4 N -0.442 5.442 5 C -0.367 4.367 6 H 0.106 0.894 7 C 0.018 3.982 8 N -0.863 5.863 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.266 1.266 13 C 0.525 3.475 14 O -0.636 6.636 15 C -0.241 4.241 16 C 0.092 3.908 17 N -0.304 5.304 18 N -0.302 5.302 19 C 0.230 3.770 20 N -0.499 5.499 21 C 0.067 3.933 22 C -0.043 4.043 23 C -0.144 4.144 24 C -0.242 4.242 25 S 0.217 5.783 26 C 0.104 3.896 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.012 0.988 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.025 0.975 34 H 0.274 0.726 35 H 0.223 0.777 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.081 0.919 41 H 0.230 0.770 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.143 -0.515 -10.244 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.154 4.154 3 C 0.026 3.974 4 N -0.158 5.158 5 C -0.494 4.494 6 H 0.123 0.877 7 C -0.187 4.187 8 N -0.499 5.499 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.190 1.190 13 C 0.315 3.685 14 O -0.526 6.526 15 C -0.255 4.255 16 C -0.097 4.097 17 N -0.122 5.122 18 N -0.080 5.080 19 C -0.133 4.133 20 N -0.218 5.218 21 C -0.066 4.066 22 C -0.083 4.083 23 C -0.202 4.202 24 C -0.382 4.382 25 S 0.468 5.532 26 C -0.042 4.042 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.239 0.761 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.247 0.753 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 15.228 -0.669 -10.444 18.477 hybrid contribution -0.108 0.016 1.225 1.230 sum 15.120 -0.653 -9.219 17.721 Atomic orbital electron populations 1.21493 0.94712 1.01189 1.00986 1.21783 0.96287 0.97172 1.00172 1.21153 0.80073 0.97317 0.98875 1.43616 1.05776 1.59919 1.06451 1.19949 1.07939 1.36736 0.84801 0.87661 1.26087 0.96843 0.94401 1.01390 1.70076 1.13605 1.38087 1.28121 0.85427 0.78725 0.79258 0.77784 1.19056 1.20322 1.19044 1.17434 0.85765 0.81274 0.84053 1.90566 1.70632 1.59776 1.31669 1.20478 0.94927 1.17338 0.92785 1.25800 0.88110 0.93648 1.02163 1.77509 1.21644 1.25448 0.87625 1.44784 1.02881 1.55368 1.04988 1.23286 0.88108 1.07609 0.94342 1.65883 0.97767 1.18134 1.40045 1.20577 0.96818 1.01477 0.87688 1.20311 0.85964 1.00216 1.01817 1.21661 1.01834 0.97994 0.98702 1.27480 0.95995 1.12079 1.02624 1.83932 1.05814 1.67311 0.96179 1.23128 0.81547 0.98535 1.00965 0.93491 0.92476 0.92668 0.96913 0.89901 0.89755 0.95664 0.91555 0.76085 0.90109 0.86215 0.92965 0.94820 0.90039 0.75320 0.77254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.91 71.98 0.71 -3.93 16 2 C -0.12 -5.29 5.66 30.59 0.17 -5.11 16 3 C 0.15 7.24 4.51 86.38 0.39 7.63 16 4 N -0.44 -22.44 2.64 -639.31 -1.69 -24.12 16 5 C -0.37 -17.87 6.90 84.07 0.58 -17.29 16 6 H 0.11 4.95 5.32 -2.91 -0.02 4.93 16 7 C 0.02 0.86 5.40 84.93 0.46 1.32 16 8 N -0.86 -41.27 8.10 21.67 0.18 -41.10 16 9 Si 0.96 37.44 29.14 68.60 2.00 39.44 16 10 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 12 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 13 C 0.52 26.55 7.52 86.64 0.65 27.20 16 14 O -0.64 -34.33 16.61 -4.11 -0.07 -34.40 16 15 C -0.24 -10.76 5.98 -20.14 -0.12 -10.88 16 16 C 0.09 4.00 10.00 85.67 0.86 4.85 16 17 N -0.30 -12.99 12.44 -56.20 -0.70 -13.69 16 18 N -0.30 -11.43 3.75 -196.10 -0.73 -12.17 16 19 C 0.23 7.28 8.13 179.10 1.46 8.74 16 20 N -0.50 -15.66 10.38 -189.33 -1.96 -17.62 16 21 C 0.07 1.44 6.07 41.50 0.25 1.70 16 22 C -0.04 -0.66 6.43 29.85 0.19 -0.46 16 23 C -0.14 -2.49 9.82 71.98 0.71 -1.78 16 24 C -0.24 -3.78 11.06 66.76 0.74 -3.04 16 25 S 0.22 4.43 22.56 -56.49 -1.27 3.15 16 26 C 0.10 3.95 10.84 84.23 0.91 4.86 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 4.08 5.82 -2.39 -0.01 4.06 16 32 H 0.08 4.22 6.47 -2.39 -0.02 4.21 16 33 H 0.03 1.24 7.63 -2.39 -0.02 1.23 16 34 H 0.27 12.45 8.31 -92.71 -0.77 11.68 16 35 H 0.22 9.62 4.61 -2.91 -0.01 9.61 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 0.88 8.03 -2.39 -0.02 0.86 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.03 0.80 8.08 -2.39 -0.02 0.78 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.23 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.21 6.59 7.91 -2.91 -0.02 6.56 16 Total: -1.00 -66.03 362.37 4.76 -61.27 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 1.05 Total: 25.43 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 7.96 Total: 13.81 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.91 Total: -108.71 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.07 Total: -34.40 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.00 Total: 39.44 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.27 Total: 3.15 kcal Total: -66.03 4.76 -61.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342804776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.329 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds