Wall clock time and date at job start Tue Mar 31 2020 17:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47377 * 2 1 4 4 C 1.33576 * 122.72078 * 124.97058 * 3 2 1 5 5 S 1.76178 * 108.02467 * 179.74746 * 4 3 2 6 6 C 1.70976 * 90.32410 * 0.33115 * 5 4 3 7 7 N 1.39362 * 124.93718 * 179.97438 * 6 5 4 8 8 C 1.34648 * 125.78017 * 359.97438 * 7 6 5 9 9 C 1.38052 * 107.36613 * 180.10147 * 8 7 6 10 10 C 1.47408 * 126.40694 * 179.89834 * 9 8 7 11 11 O 1.21608 * 120.00129 * 7.88640 * 10 9 8 12 12 N 1.34781 * 119.99953 * 187.88526 * 10 9 8 13 13 C 1.46495 * 119.99748 * 6.45347 * 12 10 9 14 14 C 1.46494 * 119.99926 * 186.45298 * 12 10 9 15 15 H 1.09001 * 109.47544 * 0.02562 * 14 12 10 16 16 C 1.53007 * 109.46861 * 239.99879 * 14 12 10 17 17 C 1.50703 * 109.46983 * 120.00390 * 14 12 10 18 18 H 1.07992 * 119.99962 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99807 * 179.72749 * 17 14 12 20 20 N 1.31514 * 119.99927 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99992 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47135 * 59.99716 * 21 19 17 23 23 H 1.48502 * 109.47131 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47053 * 299.99819 * 21 19 17 25 25 C 1.41358 * 107.18349 * 359.63469 * 9 8 7 26 26 N 1.30462 * 108.08601 * 0.22888 * 25 9 8 27 27 N 1.29574 * 110.11845 * 359.66399 * 6 5 4 28 28 H 1.09005 * 109.47244 * 59.99985 * 1 2 3 29 29 H 1.08998 * 109.47570 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47056 * 299.99935 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00065 * 2 1 3 32 32 H 1.09002 * 109.46642 * 120.00457 * 2 1 3 33 33 H 1.08003 * 125.98865 * 0.04322 * 4 3 2 34 34 H 1.07999 * 126.32216 * 0.02562 * 8 7 6 35 35 H 1.08999 * 109.47432 * 275.87125 * 13 12 10 36 36 H 1.09001 * 109.47519 * 35.87278 * 13 12 10 37 37 H 1.09006 * 109.47222 * 155.86723 * 13 12 10 38 38 H 1.08999 * 109.46915 * 60.00619 * 16 14 12 39 39 H 1.09000 * 109.46767 * 180.02562 * 16 14 12 40 40 H 1.08997 * 109.47449 * 299.99980 * 16 14 12 41 41 H 0.97001 * 119.99787 * 180.02562 * 20 19 17 42 42 H 1.08001 * 125.96036 * 180.21875 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8804 1.8868 0.9209 5 16 3.2127 3.5768 0.5504 6 6 2.1704 3.4953 -0.8025 7 7 1.9029 4.5536 -1.6688 8 6 2.4173 5.7947 -1.5780 9 6 1.8985 6.5332 -2.6226 10 6 2.1823 7.9491 -2.9187 11 8 3.0459 8.5389 -2.2980 12 7 1.4848 8.5900 -3.8775 13 6 0.3519 7.9258 -4.5269 14 6 1.8594 9.9507 -4.2702 15 1 2.7185 10.2749 -3.6828 16 6 0.6830 10.8962 -4.0188 17 6 2.2161 9.9708 -5.7342 18 1 2.1688 9.0609 -6.3140 19 6 2.5978 11.1518 -6.3346 20 7 2.6502 12.2609 -5.6297 21 14 3.0405 11.1766 -8.1492 22 1 1.8730 10.7282 -8.9498 23 1 3.4133 12.5574 -8.5490 24 1 4.1868 10.2642 -8.3916 25 6 1.0489 5.6761 -3.3586 26 7 1.0590 4.5048 -2.7841 27 7 1.6705 2.3046 -0.9089 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.2939 1.3246 1.7451 34 1 3.1074 6.1476 -0.8259 35 1 0.7163 7.2974 -5.3395 36 1 -0.1740 7.3089 -3.7982 37 1 -0.3296 8.6771 -4.9261 38 1 0.4251 10.8817 -2.9599 39 1 0.9616 11.9085 -4.3114 40 1 -0.1758 10.5719 -4.6065 41 1 2.9184 13.0918 -6.0522 42 1 0.4889 5.9440 -4.2423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342941536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:01 Heat of formation + Delta-G solvation = 113.811266 kcal Electronic energy + Delta-G solvation = -25519.842997 eV Core-core repulsion = 21822.962928 eV Total energy + Delta-G solvation = -3696.880069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77883 -40.25884 -38.70002 -35.40267 -34.61347 -33.12138 -32.38815 -30.59147 -29.80459 -28.90460 -26.53965 -25.68974 -25.20705 -24.13781 -23.01765 -21.54061 -20.79722 -19.66826 -19.07209 -18.30815 -17.19534 -16.47932 -16.21089 -15.82845 -15.46711 -15.20233 -14.99367 -14.55314 -14.35678 -14.29461 -13.91742 -13.76594 -13.25247 -13.02420 -12.91465 -12.50845 -12.39816 -12.21795 -11.65537 -11.55317 -11.32894 -11.24410 -11.17436 -11.03471 -10.79987 -10.70239 -10.51915 -10.25921 -10.16419 -10.12310 -9.77796 -9.26029 -9.21501 -9.08887 -8.46656 -8.42605 -7.60669 -6.06954 -4.15207 -0.03009 0.38065 1.16343 1.50810 1.96587 2.20871 2.54165 3.28868 3.33992 3.35835 3.65600 3.89763 3.93708 4.39969 4.52629 4.59337 4.67085 4.77024 4.91591 5.05010 5.09050 5.16420 5.22813 5.25577 5.50358 5.54351 5.63467 5.65377 5.70760 5.96754 5.97280 6.20360 6.27972 6.46992 6.78085 6.84199 7.06137 7.14288 7.41883 7.47133 7.51823 7.71531 8.02177 8.18747 8.50151 8.81968 9.01890 9.51345 10.98132 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.002369 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.651411 B =11817.271536 C =12152.341807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.096 3.904 4 C -0.271 4.271 5 S 0.175 5.825 6 C 0.279 3.721 7 N -0.300 5.300 8 C 0.109 3.891 9 C -0.239 4.239 10 C 0.580 3.420 11 O -0.554 6.554 12 N -0.584 5.584 13 C 0.072 3.928 14 C 0.260 3.740 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.074 3.926 26 N -0.264 5.264 27 N -0.468 5.468 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.187 0.813 34 H 0.194 0.806 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.013 0.987 39 H 0.095 0.905 40 H 0.030 0.970 41 H 0.264 0.736 42 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -21.254 12.916 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.037 4.037 4 C -0.411 4.411 5 S 0.426 5.574 6 C -0.087 4.087 7 N -0.078 5.078 8 C -0.036 4.036 9 C -0.254 4.254 10 C 0.367 3.633 11 O -0.434 6.434 12 N -0.313 5.313 13 C -0.071 4.071 14 C 0.160 3.840 15 H 0.083 0.917 16 C -0.206 4.206 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.116 4.116 26 N -0.081 5.081 27 N -0.186 5.186 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.204 0.796 34 H 0.210 0.790 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.032 0.968 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.685 -21.256 13.228 25.179 hybrid contribution 0.203 0.044 -1.148 1.167 sum -2.482 -21.212 12.080 24.537 Atomic orbital electron populations 1.21693 0.93952 1.01872 1.02916 1.20187 0.97004 0.88158 1.03331 1.20088 0.96221 0.97163 0.90213 1.26910 1.08877 0.97128 1.08140 1.84218 1.42479 1.10048 1.20662 1.22936 1.00420 0.89920 0.95413 1.44691 1.35788 1.06086 1.21215 1.23008 0.97975 0.82505 1.00077 1.20773 1.07007 0.97479 1.00128 1.17067 0.81950 0.83733 0.80571 1.90736 1.33986 1.67619 1.51018 1.48019 1.29737 1.17824 1.35766 1.22071 0.89852 0.98408 0.96796 1.18990 0.94783 0.74685 0.95556 0.91728 1.22107 0.97973 1.04134 0.96417 1.21289 1.46330 0.94862 0.94051 0.92222 1.24887 0.95169 0.95398 0.98303 1.69867 1.47315 0.99359 1.36011 0.86547 0.78937 0.77087 0.84761 1.20218 1.21207 1.20257 1.25545 0.96844 0.89253 0.99969 1.77600 1.11844 1.21820 0.96829 1.65906 1.26077 0.99091 1.27517 0.91479 0.92078 0.92801 0.89806 0.89891 0.79617 0.78959 0.92834 0.92118 0.90127 0.96838 0.88692 0.95053 0.92615 0.76510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.81 37.16 0.36 -0.72 16 2 C -0.05 -0.33 6.43 -27.88 -0.18 -0.51 16 3 C 0.10 0.94 6.07 -84.22 -0.51 0.43 16 4 C -0.27 -2.11 11.06 29.10 0.32 -1.79 16 5 S 0.17 1.61 22.56 -107.50 -2.42 -0.82 16 6 C 0.28 3.67 8.14 -87.03 -0.71 2.97 16 7 N -0.30 -4.48 3.74 -13.35 -0.05 -4.53 16 8 C 0.11 1.62 10.84 -16.38 -0.18 1.44 16 9 C -0.24 -4.04 5.92 -105.05 -0.62 -4.66 16 10 C 0.58 12.13 7.65 -12.53 -0.10 12.04 16 11 O -0.55 -13.45 16.26 5.27 0.09 -13.36 16 12 N -0.58 -12.27 2.75 -176.54 -0.49 -12.76 16 13 C 0.07 1.17 7.85 59.84 0.47 1.64 16 14 C 0.26 6.52 2.63 -69.08 -0.18 6.34 16 15 H 0.06 1.88 6.92 -51.93 -0.36 1.52 16 16 C -0.15 -3.47 8.96 37.16 0.33 -3.14 16 17 C -0.53 -13.96 8.37 -34.44 -0.29 -14.25 16 18 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -24.77 11.30 55.43 0.63 -24.14 16 21 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.07 1.11 9.86 -16.95 -0.17 0.94 16 26 N -0.26 -4.21 12.44 30.88 0.38 -3.83 16 27 N -0.47 -6.20 10.37 -11.19 -0.12 -6.31 16 28 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 33 H 0.19 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.19 2.41 7.91 -52.49 -0.42 1.99 16 35 H 0.05 0.79 7.26 -51.93 -0.38 0.41 16 36 H 0.06 0.80 5.44 -51.93 -0.28 0.52 16 37 H 0.08 1.31 6.44 -51.93 -0.33 0.98 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 2.45 6.05 -51.93 -0.31 2.14 16 40 H 0.03 0.67 6.67 -51.93 -0.35 0.32 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.22 2.67 4.52 -52.49 -0.24 2.44 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -33.36 363.05 -8.22 -41.58 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.15 Total: 0.51 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.54 Total: 2.38 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.36 Total: -51.57 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.42 Total: -0.82 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.36 -8.22 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342941536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.388 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds