Wall clock time and date at job start Tue Mar 31 2020 17:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47377 * 2 1 4 4 C 1.33576 * 122.72078 * 124.97058 * 3 2 1 5 5 S 1.76178 * 108.02467 * 179.74746 * 4 3 2 6 6 C 1.70976 * 90.32410 * 0.33115 * 5 4 3 7 7 N 1.39362 * 124.93718 * 179.97438 * 6 5 4 8 8 C 1.34648 * 125.78017 * 359.97438 * 7 6 5 9 9 C 1.38052 * 107.36613 * 180.10147 * 8 7 6 10 10 C 1.47408 * 126.40694 * 179.89834 * 9 8 7 11 11 O 1.21608 * 120.00129 * 7.88640 * 10 9 8 12 12 N 1.34781 * 119.99953 * 187.88526 * 10 9 8 13 13 C 1.46495 * 119.99748 * 6.45347 * 12 10 9 14 14 C 1.46494 * 119.99926 * 186.45298 * 12 10 9 15 15 H 1.09001 * 109.47544 * 0.02562 * 14 12 10 16 16 C 1.53007 * 109.46861 * 239.99879 * 14 12 10 17 17 C 1.50703 * 109.46983 * 120.00390 * 14 12 10 18 18 H 1.07992 * 119.99962 * 359.97438 * 17 14 12 19 19 C 1.37879 * 119.99807 * 179.72749 * 17 14 12 20 20 N 1.31514 * 119.99927 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99992 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47135 * 59.99716 * 21 19 17 23 23 H 1.48502 * 109.47131 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47053 * 299.99819 * 21 19 17 25 25 C 1.41358 * 107.18349 * 359.63469 * 9 8 7 26 26 N 1.30462 * 108.08601 * 0.22888 * 25 9 8 27 27 N 1.29574 * 110.11845 * 359.66399 * 6 5 4 28 28 H 1.09005 * 109.47244 * 59.99985 * 1 2 3 29 29 H 1.08998 * 109.47570 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47056 * 299.99935 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00065 * 2 1 3 32 32 H 1.09002 * 109.46642 * 120.00457 * 2 1 3 33 33 H 1.08003 * 125.98865 * 0.04322 * 4 3 2 34 34 H 1.07999 * 126.32216 * 0.02562 * 8 7 6 35 35 H 1.08999 * 109.47432 * 275.87125 * 13 12 10 36 36 H 1.09001 * 109.47519 * 35.87278 * 13 12 10 37 37 H 1.09006 * 109.47222 * 155.86723 * 13 12 10 38 38 H 1.08999 * 109.46915 * 60.00619 * 16 14 12 39 39 H 1.09000 * 109.46767 * 180.02562 * 16 14 12 40 40 H 1.08997 * 109.47449 * 299.99980 * 16 14 12 41 41 H 0.97001 * 119.99787 * 180.02562 * 20 19 17 42 42 H 1.08001 * 125.96036 * 180.21875 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8804 1.8868 0.9209 5 16 3.2127 3.5768 0.5504 6 6 2.1704 3.4953 -0.8025 7 7 1.9029 4.5536 -1.6688 8 6 2.4173 5.7947 -1.5780 9 6 1.8985 6.5332 -2.6226 10 6 2.1823 7.9491 -2.9187 11 8 3.0459 8.5389 -2.2980 12 7 1.4848 8.5900 -3.8775 13 6 0.3519 7.9258 -4.5269 14 6 1.8594 9.9507 -4.2702 15 1 2.7185 10.2749 -3.6828 16 6 0.6830 10.8962 -4.0188 17 6 2.2161 9.9708 -5.7342 18 1 2.1688 9.0609 -6.3140 19 6 2.5978 11.1518 -6.3346 20 7 2.6502 12.2609 -5.6297 21 14 3.0405 11.1766 -8.1492 22 1 1.8730 10.7282 -8.9498 23 1 3.4133 12.5574 -8.5490 24 1 4.1868 10.2642 -8.3916 25 6 1.0489 5.6761 -3.3586 26 7 1.0590 4.5048 -2.7841 27 7 1.6705 2.3046 -0.9089 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.2939 1.3246 1.7451 34 1 3.1074 6.1476 -0.8259 35 1 0.7163 7.2974 -5.3395 36 1 -0.1740 7.3089 -3.7982 37 1 -0.3296 8.6771 -4.9261 38 1 0.4251 10.8817 -2.9599 39 1 0.9616 11.9085 -4.3114 40 1 -0.1758 10.5719 -4.6065 41 1 2.9184 13.0918 -6.0522 42 1 0.4889 5.9440 -4.2423 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342941536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:01 Heat of formation + Delta-G solvation = 93.137897 kcal Electronic energy + Delta-G solvation = -25520.739461 eV Core-core repulsion = 21822.962928 eV Total energy + Delta-G solvation = -3697.776533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.92970 -41.11015 -40.28088 -37.15997 -35.57184 -34.73672 -33.46311 -32.00324 -31.07872 -30.05355 -27.97752 -27.25008 -26.64014 -24.99767 -24.27547 -22.58916 -22.24727 -20.86554 -20.08746 -19.55629 -18.46094 -18.07448 -17.40359 -17.23393 -16.94259 -16.43777 -16.15683 -15.96796 -15.60152 -15.26461 -14.80801 -14.69973 -14.59557 -14.46692 -14.20913 -13.85866 -13.58101 -13.45473 -12.96251 -12.84688 -12.77121 -12.66396 -12.45307 -12.35008 -12.22399 -12.12415 -12.07345 -11.90220 -11.50918 -11.15562 -10.98459 -10.77916 -10.63087 -10.47301 -10.33723 -9.45574 -9.27040 -8.10835 -6.27075 -0.91103 -0.41912 0.43792 0.44840 0.97145 1.00134 1.45115 1.46928 1.54235 1.68608 2.28536 2.38314 2.50761 2.85890 3.17102 3.50485 3.63230 3.81078 3.98021 4.00503 4.20500 4.33222 4.36974 4.40629 4.50652 4.57489 4.69057 4.77063 4.93912 4.96573 5.03571 5.04387 5.10016 5.11595 5.15970 5.38212 5.43190 5.50139 5.66235 5.70149 6.06343 6.11936 6.19321 6.58205 6.79626 6.81434 7.30900 7.48104 8.93202 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.002369 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.651411 B =11817.271536 C =12152.341807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.067 3.933 4 C -0.240 4.240 5 S 0.221 5.779 6 C 0.224 3.776 7 N -0.297 5.297 8 C 0.127 3.873 9 C -0.267 4.267 10 C 0.577 3.423 11 O -0.601 6.601 12 N -0.591 5.591 13 C 0.067 3.933 14 C 0.264 3.736 15 H 0.013 0.987 16 C -0.134 4.134 17 C -0.537 4.537 18 H 0.063 0.937 19 C 0.016 3.984 20 N -0.917 5.917 21 Si 0.964 3.036 22 H -0.262 1.262 23 H -0.285 1.285 24 H -0.278 1.278 25 C 0.085 3.915 26 N -0.288 5.288 27 N -0.491 5.491 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.229 0.771 34 H 0.212 0.788 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.264 0.736 42 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 -24.098 13.682 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.065 4.065 4 C -0.379 4.379 5 S 0.471 5.529 6 C -0.140 4.140 7 N -0.073 5.073 8 C -0.020 4.020 9 C -0.282 4.282 10 C 0.366 3.634 11 O -0.485 6.485 12 N -0.320 5.320 13 C -0.075 4.075 14 C 0.162 3.838 15 H 0.031 0.969 16 C -0.193 4.193 17 C -0.576 4.576 18 H 0.081 0.919 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.789 3.211 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.204 1.204 25 C -0.105 4.105 26 N -0.105 5.105 27 N -0.210 5.210 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.245 0.755 34 H 0.228 0.772 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.039 0.961 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.862 -24.159 13.984 28.061 hybrid contribution 0.312 0.748 -1.173 1.426 sum -2.551 -23.411 12.812 26.809 Atomic orbital electron populations 1.21661 0.94646 1.02583 1.01290 1.20318 0.96365 0.86830 1.04927 1.20546 0.97537 0.97938 0.90482 1.27524 1.06310 0.96391 1.07665 1.84090 1.40136 1.10759 1.17883 1.23231 1.03426 0.90013 0.97306 1.44754 1.35022 1.06520 1.21034 1.23229 0.96986 0.82355 0.99468 1.20341 1.09809 0.95640 1.02362 1.17536 0.81019 0.85084 0.79747 1.90693 1.36002 1.69063 1.52709 1.47966 1.31043 1.16768 1.36214 1.22356 0.88441 0.98714 0.97961 1.18593 0.93662 0.77277 0.94241 0.96930 1.21903 0.97949 1.02341 0.97087 1.21552 1.46305 0.95035 0.94691 0.91875 1.25708 0.95089 0.95081 1.02511 1.70014 1.48008 0.99843 1.37679 0.85528 0.78856 0.76925 0.79808 1.18704 1.21066 1.20396 1.25753 0.96227 0.88374 1.00109 1.77542 1.12926 1.22297 0.97776 1.65864 1.26453 0.99698 1.28982 0.94477 0.90193 0.92992 0.89995 0.86435 0.75455 0.77185 0.91114 0.89014 0.90166 0.96137 0.91190 0.93170 0.92661 0.74462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.81 71.98 0.71 -1.21 16 2 C -0.04 -0.51 6.43 29.85 0.19 -0.31 16 3 C 0.07 1.16 6.07 41.50 0.25 1.41 16 4 C -0.24 -2.80 11.06 66.76 0.74 -2.07 16 5 S 0.22 3.50 22.56 -56.49 -1.27 2.23 16 6 C 0.22 5.66 8.14 179.09 1.46 7.12 16 7 N -0.30 -8.72 3.74 -196.16 -0.73 -9.46 16 8 C 0.13 3.74 10.84 84.22 0.91 4.65 16 9 C -0.27 -9.02 5.92 -20.14 -0.12 -9.14 16 10 C 0.58 24.81 7.65 86.66 0.66 25.48 16 11 O -0.60 -30.65 16.26 -4.06 -0.07 -30.72 16 12 N -0.59 -25.25 2.75 -830.69 -2.29 -27.53 16 13 C 0.07 2.09 7.85 127.77 1.00 3.09 16 14 C 0.26 13.69 2.63 44.25 0.12 13.81 16 15 H 0.01 0.79 6.92 -2.39 -0.02 0.77 16 16 C -0.13 -6.45 8.96 71.98 0.64 -5.80 16 17 C -0.54 -28.89 8.37 25.60 0.21 -28.67 16 18 H 0.06 3.27 7.65 -2.91 -0.02 3.25 16 19 C 0.02 0.86 5.30 84.66 0.45 1.30 16 20 N -0.92 -52.48 11.30 21.45 0.24 -52.24 16 21 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 C 0.08 2.48 9.86 85.66 0.84 3.32 16 26 N -0.29 -9.07 12.44 -56.22 -0.70 -9.77 16 27 N -0.49 -12.53 10.37 -189.33 -1.96 -14.49 16 28 H 0.04 0.71 8.08 -2.38 -0.02 0.69 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 0.51 8.03 -2.39 -0.02 0.49 16 33 H 0.23 0.63 8.06 -2.91 -0.02 0.61 16 34 H 0.21 5.18 7.91 -2.91 -0.02 5.16 16 35 H 0.07 1.96 7.26 -2.39 -0.02 1.95 16 36 H 0.09 2.28 5.44 -2.39 -0.01 2.27 16 37 H 0.08 2.50 6.44 -2.38 -0.02 2.48 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.07 3.73 6.05 -2.39 -0.01 3.71 16 40 H 0.05 2.16 6.67 -2.39 -0.02 2.14 16 41 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.24 5.49 4.52 -2.91 -0.01 5.47 16 Total: -1.00 -76.46 363.05 4.38 -72.08 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 1.06 Total: 12.06 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 8.07 Total: 12.98 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -5.44 Total: -113.49 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.07 Total: -30.72 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.27 Total: 2.23 kcal Total: -76.46 4.38 -72.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342941536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.218 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds