Wall clock time and date at job start Tue Mar 31 2020 17:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46726 * 2 1 4 4 C 1.33577 * 122.71503 * 125.00273 * 3 2 1 5 5 S 1.76180 * 108.02144 * 180.02562 * 4 3 2 6 6 C 1.70967 * 90.32631 * 359.97438 * 5 4 3 7 7 N 1.39376 * 124.94050 * 180.02562 * 6 5 4 8 8 C 1.34647 * 125.77464 * 359.68915 * 7 6 5 9 9 C 1.38048 * 107.36130 * 179.90425 * 8 7 6 10 10 C 1.47406 * 126.40766 * 180.10048 * 9 8 7 11 11 O 1.21609 * 120.00327 * 0.28668 * 10 9 8 12 12 N 1.34776 * 120.00251 * 180.27854 * 10 9 8 13 13 C 1.46497 * 120.00412 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47163 * 325.00657 * 13 12 10 15 15 C 1.50701 * 109.47418 * 205.00482 * 13 12 10 16 16 H 1.07998 * 120.00096 * 0.02562 * 15 13 12 17 17 C 1.37878 * 119.99995 * 179.97438 * 15 13 12 18 18 N 1.31510 * 120.00008 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47089 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47182 * 120.00230 * 19 17 15 22 22 H 1.48504 * 109.47150 * 240.00027 * 19 17 15 23 23 C 1.53001 * 109.46882 * 85.00241 * 13 12 10 24 24 C 1.52996 * 109.47157 * 294.99830 * 23 13 12 25 25 C 1.41367 * 107.18683 * 0.36297 * 9 8 7 26 26 N 1.30460 * 108.08210 * 359.77429 * 25 9 8 27 27 N 1.29574 * 110.12085 * 359.73812 * 6 5 4 28 28 H 1.08999 * 109.47230 * 299.99743 * 1 2 3 29 29 H 1.09000 * 109.47236 * 60.00148 * 1 2 3 30 30 H 1.09002 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00257 * 2 1 3 32 32 H 1.09000 * 109.47236 * 119.99852 * 2 1 3 33 33 H 1.07994 * 125.99092 * 0.03160 * 4 3 2 34 34 H 1.07993 * 126.32119 * 0.02562 * 8 7 6 35 35 H 0.97001 * 119.99950 * 0.02562 * 12 10 9 36 36 H 0.97004 * 120.00202 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46996 * 55.00523 * 23 13 12 38 38 H 1.09007 * 109.46787 * 175.00033 * 23 13 12 39 39 H 1.08994 * 109.47330 * 300.00121 * 24 23 13 40 40 H 1.09004 * 109.46653 * 60.00610 * 24 23 13 41 41 H 1.08997 * 109.46722 * 179.97438 * 24 23 13 42 42 H 1.07998 * 125.95612 * 179.78283 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8807 1.8867 0.9206 5 16 3.2064 3.5791 0.5550 6 6 2.1697 3.4956 -0.8020 7 7 1.9012 4.5543 -1.6678 8 6 2.4060 5.7987 -1.5698 9 6 1.8934 6.5350 -2.6189 10 6 2.1739 7.9520 -2.9127 11 8 2.9274 8.5838 -2.1972 12 7 1.5954 8.5475 -3.9744 13 6 1.8746 9.9556 -4.2667 14 1 1.9984 10.5030 -3.3323 15 6 0.7265 10.5443 -5.0454 16 1 -0.1261 9.9310 -5.2971 17 6 0.7641 11.8661 -5.4357 18 7 1.8016 12.6134 -5.1280 19 14 -0.6594 12.5960 -6.4004 20 1 -1.6963 11.5551 -6.6163 21 1 -1.2448 13.7282 -5.6384 22 1 -0.1683 13.0847 -7.7139 23 6 3.1581 10.0602 -5.0929 24 6 4.3443 9.5777 -4.2557 25 6 1.0443 5.6776 -3.3554 26 7 1.0566 4.5057 -2.7824 27 7 1.6746 2.3032 -0.9119 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2945 1.3245 1.7445 34 1 3.0878 6.1545 -0.8116 35 1 0.9942 8.0437 -4.5451 36 1 1.8282 13.5432 -5.4029 37 1 3.0672 9.4408 -5.9853 38 1 3.3182 11.0979 -5.3857 39 1 4.4351 10.1971 -3.3635 40 1 4.1842 8.5400 -3.9630 41 1 5.2585 9.6518 -4.8445 42 1 0.4835 5.9460 -4.2385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358079940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:08 Heat of formation + Delta-G solvation = 86.200071 kcal Electronic energy + Delta-G solvation = -25301.402019 eV Core-core repulsion = 21603.324639 eV Total energy + Delta-G solvation = -3698.077380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.75915 -40.25918 -38.66146 -35.04099 -34.59472 -32.80202 -32.23312 -31.07325 -30.31706 -29.39178 -27.05622 -25.69050 -24.14348 -23.40250 -22.56004 -21.45338 -20.52743 -19.59995 -19.11473 -18.88925 -17.55947 -16.66461 -16.24259 -15.59712 -15.40814 -15.16128 -15.00215 -14.61207 -14.38290 -14.34028 -13.98784 -13.78947 -13.21678 -13.03906 -12.89014 -12.63562 -12.25077 -12.01050 -11.66174 -11.51481 -11.33201 -11.25552 -11.22261 -10.93952 -10.83892 -10.61125 -10.30268 -10.17432 -10.16181 -9.80333 -9.62457 -9.27366 -9.14957 -9.02307 -8.50209 -8.49780 -7.81130 -6.12039 -4.21105 -0.04884 0.35672 1.14357 1.48983 1.93227 2.17570 2.51903 3.24519 3.32780 3.35214 3.65019 3.97282 4.09332 4.37683 4.51425 4.56312 4.65714 4.76246 4.90435 5.03827 5.08664 5.18597 5.19839 5.24791 5.49863 5.61294 5.69641 5.80374 5.96512 6.22044 6.41124 6.43657 6.48105 6.67782 7.06515 7.10503 7.21273 7.37170 7.43376 7.44470 7.63313 7.74375 7.90923 8.18551 8.66227 8.78123 9.11574 9.46230 10.93358 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.024320 B = 0.002318 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.055683 B =12078.066712 C =12862.873589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.096 3.904 4 C -0.270 4.270 5 S 0.176 5.824 6 C 0.278 3.722 7 N -0.299 5.299 8 C 0.109 3.891 9 C -0.241 4.241 10 C 0.577 3.423 11 O -0.550 6.550 12 N -0.699 5.699 13 C 0.271 3.729 14 H 0.051 0.949 15 C -0.533 4.533 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.128 4.128 24 C -0.138 4.138 25 C 0.091 3.909 26 N -0.261 5.261 27 N -0.468 5.468 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.187 0.813 34 H 0.194 0.806 35 H 0.388 0.612 36 H 0.264 0.736 37 H 0.032 0.968 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.022 0.978 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 -22.462 11.129 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.037 4.037 4 C -0.410 4.410 5 S 0.427 5.573 6 C -0.088 4.088 7 N -0.077 5.077 8 C -0.036 4.036 9 C -0.256 4.256 10 C 0.362 3.638 11 O -0.430 6.430 12 N -0.346 5.346 13 C 0.170 3.830 14 H 0.069 0.931 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.519 5.519 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.167 4.167 24 C -0.195 4.195 25 C -0.101 4.101 26 N -0.078 5.078 27 N -0.186 5.186 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.204 0.796 34 H 0.211 0.789 35 H 0.220 0.780 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.395 -22.330 11.624 25.288 hybrid contribution -1.014 0.224 -0.875 1.358 sum 1.381 -22.106 10.749 24.620 Atomic orbital electron populations 1.21695 0.93938 1.01893 1.02928 1.20189 0.97013 0.88143 1.03336 1.20090 0.96202 0.97208 0.90184 1.26918 1.08836 0.97092 1.08177 1.84216 1.42747 1.09816 1.20484 1.22929 1.00645 0.89867 0.95333 1.44657 1.36036 1.05949 1.21106 1.23023 0.98182 0.82414 0.99945 1.20862 1.07182 0.97624 0.99962 1.17037 0.81030 0.83841 0.81916 1.90761 1.37316 1.65017 1.49894 1.46314 1.46125 1.14946 1.27176 1.18827 0.93162 0.74768 0.96273 0.93102 1.21263 1.03580 0.96124 1.36174 0.91955 1.24879 0.96164 0.96814 0.95821 1.69902 1.28822 1.07559 1.45638 0.86411 0.82080 0.79151 0.79565 1.19717 1.20928 1.20913 1.21940 0.94326 1.03306 0.97093 1.21843 0.97457 1.00529 0.99668 1.24557 0.96631 0.89587 0.99283 1.77567 1.11424 1.21774 0.97055 1.65906 1.25973 0.99119 1.27575 0.92783 0.91486 0.92062 0.89808 0.89877 0.79598 0.78940 0.77959 0.92626 0.94958 0.88252 0.93112 0.94244 0.95893 0.78003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.82 37.16 0.36 -0.72 16 2 C -0.05 -0.32 6.43 -27.88 -0.18 -0.50 16 3 C 0.10 0.92 6.07 -84.22 -0.51 0.41 16 4 C -0.27 -2.05 11.06 29.10 0.32 -1.73 16 5 S 0.18 1.57 22.56 -107.50 -2.42 -0.86 16 6 C 0.28 3.57 8.14 -87.02 -0.71 2.86 16 7 N -0.30 -4.32 3.75 -13.35 -0.05 -4.37 16 8 C 0.11 1.54 10.83 -16.39 -0.18 1.37 16 9 C -0.24 -3.82 6.13 -105.04 -0.64 -4.46 16 10 C 0.58 11.20 6.38 -12.53 -0.08 11.12 16 11 O -0.55 -12.33 14.03 5.27 0.07 -12.26 16 12 N -0.70 -13.99 5.01 -56.02 -0.28 -14.27 16 13 C 0.27 6.62 2.24 -69.08 -0.15 6.47 16 14 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 15 C -0.53 -13.70 8.73 -34.44 -0.30 -14.00 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 18 N -0.88 -24.27 11.30 55.43 0.63 -23.65 16 19 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 24 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 25 C 0.09 1.28 11.50 -16.94 -0.19 1.08 16 26 N -0.26 -4.03 12.44 30.88 0.38 -3.65 16 27 N -0.47 -6.09 10.38 -11.19 -0.12 -6.20 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.35 8.03 -51.93 -0.42 -0.06 16 33 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.19 2.29 7.91 -52.49 -0.42 1.88 16 35 H 0.39 6.64 7.49 -40.82 -0.31 6.34 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 2.62 5.96 -51.92 -0.31 2.31 16 39 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 40 H 0.04 0.84 5.65 -51.93 -0.29 0.55 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.20 2.17 7.50 -52.49 -0.39 1.78 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -32.23 367.73 -8.89 -41.12 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.43 Total: 5.59 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.19 Total: -2.32 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.56 Total: -52.13 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.42 Total: -0.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.23 -8.89 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358079940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.320 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds