Wall clock time and date at job start Tue Mar 31 2020 17:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46726 * 2 1 4 4 C 1.33577 * 122.71503 * 125.00273 * 3 2 1 5 5 S 1.76180 * 108.02144 * 180.02562 * 4 3 2 6 6 C 1.70967 * 90.32631 * 359.97438 * 5 4 3 7 7 N 1.39376 * 124.94050 * 180.02562 * 6 5 4 8 8 C 1.34647 * 125.77464 * 359.68915 * 7 6 5 9 9 C 1.38048 * 107.36130 * 179.90425 * 8 7 6 10 10 C 1.47406 * 126.40766 * 180.10048 * 9 8 7 11 11 O 1.21609 * 120.00327 * 0.28668 * 10 9 8 12 12 N 1.34776 * 120.00251 * 180.27854 * 10 9 8 13 13 C 1.46497 * 120.00412 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.47163 * 325.00657 * 13 12 10 15 15 C 1.50701 * 109.47418 * 205.00482 * 13 12 10 16 16 H 1.07998 * 120.00096 * 0.02562 * 15 13 12 17 17 C 1.37878 * 119.99995 * 179.97438 * 15 13 12 18 18 N 1.31510 * 120.00008 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47089 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47182 * 120.00230 * 19 17 15 22 22 H 1.48504 * 109.47150 * 240.00027 * 19 17 15 23 23 C 1.53001 * 109.46882 * 85.00241 * 13 12 10 24 24 C 1.52996 * 109.47157 * 294.99830 * 23 13 12 25 25 C 1.41367 * 107.18683 * 0.36297 * 9 8 7 26 26 N 1.30460 * 108.08210 * 359.77429 * 25 9 8 27 27 N 1.29574 * 110.12085 * 359.73812 * 6 5 4 28 28 H 1.08999 * 109.47230 * 299.99743 * 1 2 3 29 29 H 1.09000 * 109.47236 * 60.00148 * 1 2 3 30 30 H 1.09002 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47230 * 240.00257 * 2 1 3 32 32 H 1.09000 * 109.47236 * 119.99852 * 2 1 3 33 33 H 1.07994 * 125.99092 * 0.03160 * 4 3 2 34 34 H 1.07993 * 126.32119 * 0.02562 * 8 7 6 35 35 H 0.97001 * 119.99950 * 0.02562 * 12 10 9 36 36 H 0.97004 * 120.00202 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46996 * 55.00523 * 23 13 12 38 38 H 1.09007 * 109.46787 * 175.00033 * 23 13 12 39 39 H 1.08994 * 109.47330 * 300.00121 * 24 23 13 40 40 H 1.09004 * 109.46653 * 60.00610 * 24 23 13 41 41 H 1.08997 * 109.46722 * 179.97438 * 24 23 13 42 42 H 1.07998 * 125.95612 * 179.78283 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8807 1.8867 0.9206 5 16 3.2064 3.5791 0.5550 6 6 2.1697 3.4956 -0.8020 7 7 1.9012 4.5543 -1.6678 8 6 2.4060 5.7987 -1.5698 9 6 1.8934 6.5350 -2.6189 10 6 2.1739 7.9520 -2.9127 11 8 2.9274 8.5838 -2.1972 12 7 1.5954 8.5475 -3.9744 13 6 1.8746 9.9556 -4.2667 14 1 1.9984 10.5030 -3.3323 15 6 0.7265 10.5443 -5.0454 16 1 -0.1261 9.9310 -5.2971 17 6 0.7641 11.8661 -5.4357 18 7 1.8016 12.6134 -5.1280 19 14 -0.6594 12.5960 -6.4004 20 1 -1.6963 11.5551 -6.6163 21 1 -1.2448 13.7282 -5.6384 22 1 -0.1683 13.0847 -7.7139 23 6 3.1581 10.0602 -5.0929 24 6 4.3443 9.5777 -4.2557 25 6 1.0443 5.6776 -3.3554 26 7 1.0566 4.5057 -2.7824 27 7 1.6746 2.3032 -0.9119 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2945 1.3245 1.7445 34 1 3.0878 6.1545 -0.8116 35 1 0.9942 8.0437 -4.5451 36 1 1.8282 13.5432 -5.4029 37 1 3.0672 9.4408 -5.9853 38 1 3.3182 11.0979 -5.3857 39 1 4.4351 10.1971 -3.3635 40 1 4.1842 8.5400 -3.9630 41 1 5.2585 9.6518 -4.8445 42 1 0.4835 5.9460 -4.2385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358079940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:07 Heat of formation + Delta-G solvation = 66.021870 kcal Electronic energy + Delta-G solvation = -25302.277011 eV Core-core repulsion = 21603.324639 eV Total energy + Delta-G solvation = -3698.952372 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.84747 -41.07711 -40.24660 -36.86143 -35.43014 -34.27376 -33.49599 -32.75142 -31.50777 -30.24491 -28.89270 -26.63038 -25.28514 -24.64493 -24.04145 -22.40910 -21.87345 -21.21816 -20.26787 -19.93826 -18.76320 -18.00814 -17.24648 -17.15559 -16.96854 -16.30043 -16.16297 -15.99081 -15.67030 -15.27961 -14.94040 -14.67033 -14.59076 -14.54249 -14.02915 -13.78982 -13.57790 -13.40880 -13.13388 -12.85639 -12.82854 -12.67440 -12.36711 -12.23476 -12.09919 -12.01270 -11.91280 -11.55737 -11.51080 -10.99787 -10.98450 -10.74437 -10.61919 -10.48667 -10.31107 -9.62619 -9.35071 -8.12122 -6.28237 -0.89498 -0.41523 0.44030 0.48047 0.98809 1.02687 1.46619 1.48603 1.59620 1.69206 2.38851 2.51358 2.65150 2.88759 3.17982 3.52695 3.67793 3.94830 3.98979 4.04090 4.21146 4.36318 4.49122 4.54577 4.56300 4.58247 4.63573 4.83064 4.96495 5.03262 5.10693 5.14256 5.18044 5.32857 5.37800 5.44424 5.49744 5.61487 5.66836 5.85688 5.97140 6.12633 6.22012 6.58994 6.79671 7.02902 7.37781 7.59788 8.93435 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.024320 B = 0.002318 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.055683 B =12078.066712 C =12862.873589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.067 3.933 4 C -0.241 4.241 5 S 0.223 5.777 6 C 0.224 3.776 7 N -0.298 5.298 8 C 0.126 3.874 9 C -0.267 4.267 10 C 0.582 3.418 11 O -0.586 6.586 12 N -0.697 5.697 13 C 0.280 3.720 14 H 0.003 0.997 15 C -0.544 4.544 16 H 0.073 0.927 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.280 1.280 23 C -0.122 4.122 24 C -0.124 4.124 25 C 0.101 3.899 26 N -0.290 5.290 27 N -0.493 5.493 28 H 0.050 0.950 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.229 0.771 34 H 0.212 0.788 35 H 0.403 0.597 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.028 0.972 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -24.935 12.099 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.065 4.065 4 C -0.380 4.380 5 S 0.474 5.526 6 C -0.139 4.139 7 N -0.074 5.074 8 C -0.021 4.021 9 C -0.282 4.282 10 C 0.369 3.631 11 O -0.468 6.468 12 N -0.344 5.344 13 C 0.177 3.823 14 H 0.021 0.979 15 C -0.583 4.583 16 H 0.091 0.909 17 C -0.184 4.184 18 N -0.552 5.552 19 Si 0.792 3.208 20 H -0.185 1.185 21 H -0.212 1.212 22 H -0.206 1.206 23 C -0.161 4.161 24 C -0.181 4.181 25 C -0.090 4.090 26 N -0.107 5.107 27 N -0.212 5.212 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.245 0.755 34 H 0.229 0.771 35 H 0.238 0.762 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.047 0.953 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.380 -24.868 12.587 27.973 hybrid contribution -0.943 0.824 -0.976 1.588 sum 1.437 -24.044 11.611 26.739 Atomic orbital electron populations 1.21662 0.94722 1.02574 1.01248 1.20316 0.96292 0.86888 1.04939 1.20538 0.97531 0.97970 0.90475 1.27521 1.06337 0.96435 1.07706 1.84067 1.40416 1.10453 1.17706 1.23242 1.03546 0.89955 0.97205 1.44730 1.35352 1.06414 1.20953 1.23262 0.97222 0.82237 0.99383 1.20432 1.09830 0.95918 1.02028 1.17369 0.79901 0.84998 0.80854 1.90736 1.38872 1.66300 1.50897 1.46027 1.46864 1.13503 1.28054 1.18404 0.93449 0.76606 0.93878 0.97903 1.21608 1.04169 0.96578 1.35909 0.90929 1.25720 0.98520 0.97341 0.96813 1.70048 1.30668 1.07778 1.46748 0.85369 0.79163 0.78270 0.77955 1.18488 1.21191 1.20609 1.21794 0.94886 1.01842 0.97544 1.21680 0.97652 1.00108 0.98671 1.24891 0.95919 0.88646 0.99543 1.77512 1.12666 1.22472 0.98096 1.65866 1.26426 0.99785 1.29100 0.93035 0.94530 0.90188 0.89966 0.86435 0.75488 0.77124 0.76177 0.92674 0.94048 0.90946 0.95254 0.93771 0.93752 0.75516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.82 71.98 0.71 -1.24 16 2 C -0.04 -0.50 6.43 29.85 0.19 -0.31 16 3 C 0.07 1.14 6.07 41.50 0.25 1.40 16 4 C -0.24 -2.75 11.06 66.76 0.74 -2.02 16 5 S 0.22 3.42 22.56 -56.49 -1.27 2.14 16 6 C 0.22 5.55 8.14 179.09 1.46 7.01 16 7 N -0.30 -8.48 3.75 -196.16 -0.73 -9.22 16 8 C 0.13 3.51 10.83 84.22 0.91 4.42 16 9 C -0.27 -8.42 6.13 -20.14 -0.12 -8.55 16 10 C 0.58 22.92 6.38 86.66 0.55 23.48 16 11 O -0.59 -27.01 14.03 -4.06 -0.06 -27.06 16 12 N -0.70 -28.21 5.01 -449.39 -2.25 -30.46 16 13 C 0.28 14.05 2.24 44.25 0.10 14.15 16 14 H 0.00 0.18 7.58 -2.39 -0.02 0.17 16 15 C -0.54 -28.24 8.73 25.60 0.22 -28.01 16 16 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 17 C 0.02 0.86 5.29 84.66 0.45 1.30 16 18 N -0.91 -51.62 11.30 21.45 0.24 -51.38 16 19 Si 0.97 41.78 29.54 68.60 2.03 43.80 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 C -0.12 -5.90 5.45 30.59 0.17 -5.74 16 24 C -0.12 -5.49 8.51 71.98 0.61 -4.88 16 25 C 0.10 2.79 11.50 85.67 0.99 3.77 16 26 N -0.29 -8.93 12.44 -56.22 -0.70 -9.63 16 27 N -0.49 -12.46 10.38 -189.32 -1.96 -14.43 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.70 8.08 -2.39 -0.02 0.69 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.12 0.50 8.03 -2.39 -0.02 0.48 16 33 H 0.23 0.59 8.06 -2.91 -0.02 0.56 16 34 H 0.21 4.85 7.91 -2.91 -0.02 4.83 16 35 H 0.40 13.67 7.49 -92.71 -0.69 12.98 16 36 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 3.94 5.96 -2.38 -0.01 3.92 16 39 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 40 H 0.04 1.89 5.65 -2.38 -0.01 1.88 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.23 4.67 7.50 -2.91 -0.02 4.65 16 Total: -1.00 -72.87 367.73 2.87 -70.00 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.36 Total: 21.45 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 7.22 Total: 4.79 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -5.41 Total: -115.12 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.06 Total: -27.06 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.27 Total: 2.14 kcal Total: -72.87 2.87 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358079940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.022 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds