Wall clock time and date at job start Tue Mar 31 2020 17:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 N 1.46501 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99716 * 264.54068 * 4 3 2 6 6 H 1.08000 * 119.99625 * 146.01505 * 5 4 3 7 7 C 1.38944 * 120.00003 * 326.01324 * 5 4 3 8 8 N 1.31403 * 120.00143 * 337.80867 * 7 5 4 9 9 Si 1.86804 * 119.99671 * 157.80987 * 7 5 4 10 10 H 1.48502 * 109.47171 * 90.00206 * 9 7 5 11 11 H 1.48508 * 109.46651 * 209.99940 * 9 7 5 12 12 H 1.48495 * 109.47041 * 329.99871 * 9 7 5 13 13 C 1.34771 * 120.00189 * 84.54195 * 4 3 2 14 14 O 1.21294 * 120.00198 * 359.97438 * 13 4 3 15 15 C 1.50696 * 120.00312 * 179.97438 * 13 4 3 16 16 N 1.46497 * 109.47658 * 179.97438 * 15 13 4 17 17 C 1.34774 * 120.00215 * 179.97438 * 16 15 13 18 18 O 1.21581 * 120.00177 * 0.02562 * 17 16 15 19 19 C 1.47615 * 119.99871 * 180.02562 * 17 16 15 20 20 C 1.39697 * 120.08437 * 0.02562 * 19 17 16 21 21 C 1.37765 * 120.00928 * 179.73358 * 20 19 17 22 22 C 1.38859 * 120.21444 * 0.47714 * 21 20 19 23 23 C 1.39547 * 120.05732 * 359.52471 * 22 21 20 24 24 C 1.38129 * 119.97758 * 0.23682 * 23 22 21 25 25 O 1.36531 * 108.59862 * 180.23648 * 23 22 21 26 26 C 1.43983 * 105.44971 * 342.69140 * 25 23 22 27 27 O 1.36363 * 131.35316 * 179.83107 * 22 21 20 28 28 H 1.08999 * 109.46766 * 299.99725 * 1 2 3 29 29 H 1.08993 * 109.47290 * 59.99619 * 1 2 3 30 30 H 1.08996 * 109.46793 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46766 * 240.00274 * 2 1 3 32 32 H 1.08993 * 109.47290 * 120.00381 * 2 1 3 33 33 H 1.08999 * 109.47091 * 60.00473 * 3 2 1 34 34 H 1.09002 * 109.47176 * 300.00468 * 3 2 1 35 35 H 0.97010 * 120.00503 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47007 * 59.99881 * 15 13 4 37 37 H 1.09004 * 109.47224 * 300.00263 * 15 13 4 38 38 H 0.97001 * 120.00004 * 0.02562 * 16 15 13 39 39 H 1.08010 * 119.99459 * 359.97406 * 20 19 17 40 40 H 1.07995 * 119.89739 * 180.30870 * 21 20 19 41 41 H 1.07996 * 120.04648 * 180.02562 * 24 23 22 42 42 H 1.09003 * 110.56337 * 268.61775 * 26 25 23 43 43 H 1.08995 * 110.56601 * 145.75844 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.5552 1.1811 6 1 5.1327 1.0423 1.3099 7 6 3.6747 2.3294 2.2129 8 7 2.8038 3.2777 1.9504 9 14 4.2188 2.0220 3.9734 10 1 5.4093 2.8564 4.2764 11 1 3.1155 2.3780 4.9016 12 1 4.5638 0.5875 4.1415 13 6 4.1785 1.3316 -1.1628 14 8 3.5716 1.2314 -2.2082 15 6 5.6854 1.3322 -1.1635 16 7 6.1733 1.2003 -2.5385 17 6 7.4982 1.1777 -2.7843 18 8 8.2887 1.2664 -1.8648 19 6 7.9897 1.0454 -4.1699 20 6 7.0830 0.9439 -5.2278 21 6 7.5434 0.8260 -6.5209 22 6 8.9079 0.7975 -6.7770 23 6 9.8188 0.8984 -5.7247 24 6 9.3629 1.0218 -4.4266 25 8 11.0833 0.8504 -6.2373 26 6 10.9393 0.3092 -7.5637 27 8 9.6033 0.6868 -7.9448 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.4430 3.8180 2.6709 36 1 6.0493 0.4952 -0.5674 37 1 6.0486 2.2672 -0.7368 38 1 5.5427 1.1299 -3.2722 39 1 6.0209 0.9618 -5.0323 40 1 6.8409 0.7527 -7.3378 41 1 10.0669 1.1003 -3.6115 42 1 11.0404 -0.7760 -7.5474 43 1 11.6701 0.7528 -8.2397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359270141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:22 Heat of formation + Delta-G solvation = -101.553864 kcal Electronic energy + Delta-G solvation = -27980.486718 eV Core-core repulsion = 23799.222094 eV Total energy + Delta-G solvation = -4181.264624 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44922 -39.87316 -38.65877 -37.32676 -36.59594 -35.42926 -33.97894 -32.88271 -31.47074 -30.96420 -30.53862 -27.72830 -26.20060 -25.62700 -24.45151 -23.55894 -23.02503 -20.97504 -20.51618 -19.36578 -18.66252 -18.19904 -17.63944 -17.36419 -16.56292 -16.11949 -15.57880 -15.39431 -15.20109 -14.73434 -14.68445 -14.44022 -14.12645 -14.01021 -13.91174 -13.80923 -13.41283 -13.29307 -13.07369 -13.04285 -12.67057 -12.37864 -11.90471 -11.60945 -11.43336 -11.39988 -11.29487 -11.10886 -11.02369 -10.72447 -10.43116 -10.36564 -9.86866 -9.80745 -9.21398 -9.17022 -8.76309 -8.66031 -8.35249 -7.67524 -6.50520 -4.17953 0.52104 0.96922 2.36422 2.81532 3.03098 3.06514 3.17717 3.21791 3.44339 3.65943 3.72039 4.03615 4.16181 4.33420 4.54307 4.64515 4.74926 4.82761 4.83397 4.88727 5.00404 5.24810 5.69839 5.71619 5.75193 5.80322 5.86080 5.91412 5.99270 6.06469 6.12430 6.13076 6.29562 6.42345 6.48412 6.60920 6.68312 6.75597 6.79980 7.02700 7.27302 7.39413 7.74254 7.82957 8.23156 8.42495 8.92767 9.32295 9.74804 10.50468 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.002460 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.991664 B =11377.698420 C =12579.390068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.425 5.425 5 C -0.351 4.351 6 H 0.095 0.905 7 C 0.048 3.952 8 N -0.852 5.852 9 Si 0.914 3.086 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.267 1.267 13 C 0.456 3.544 14 O -0.610 6.610 15 C 0.118 3.882 16 N -0.703 5.703 17 C 0.558 3.442 18 O -0.540 6.540 19 C -0.117 4.117 20 C -0.071 4.071 21 C -0.107 4.107 22 C 0.052 3.948 23 C 0.020 3.980 24 C -0.042 4.042 25 O -0.306 6.306 26 C 0.213 3.787 27 O -0.307 6.307 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.272 0.728 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.408 0.592 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.085 0.915 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.092 -5.635 -13.539 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.141 5.141 5 C -0.478 4.478 6 H 0.112 0.888 7 C -0.159 4.159 8 N -0.488 5.488 9 Si 0.740 3.260 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.191 1.191 13 C 0.244 3.756 14 O -0.498 6.498 15 C -0.008 4.008 16 N -0.357 5.357 17 C 0.344 3.656 18 O -0.418 6.418 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.125 4.125 22 C 0.007 3.993 23 C -0.024 4.024 24 C -0.061 4.061 25 O -0.223 6.223 26 C 0.101 3.899 27 O -0.223 6.223 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.246 0.754 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.103 0.897 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.335 -5.362 -13.367 16.640 hybrid contribution 0.142 -0.151 0.477 0.520 sum 8.477 -5.513 -12.890 16.383 Atomic orbital electron populations 1.21651 0.96491 1.00500 1.01432 1.21830 0.94809 0.99279 1.01390 1.21507 0.80870 0.94715 1.03815 1.43426 1.05063 1.60889 1.04740 1.19505 1.07742 1.30043 0.90521 0.88777 1.25339 0.96666 0.93266 1.00644 1.69937 1.29581 1.15797 1.33478 0.86141 0.78559 0.79362 0.81957 1.19985 1.20626 1.19143 1.20176 0.88773 0.82402 0.84205 1.90494 1.69800 1.57778 1.31687 1.20956 0.93689 1.04132 0.81992 1.45716 1.06455 1.72887 1.10652 1.17858 0.82517 0.77457 0.87775 1.90791 1.55361 1.50296 1.45394 1.19675 0.92722 1.05760 0.93884 1.21236 1.00375 0.96630 0.90722 1.19996 0.90730 1.04053 0.97733 1.20081 0.93884 1.01736 0.83553 1.19570 0.82895 1.05731 0.94250 1.20049 0.94989 0.97959 0.93127 1.87401 1.24505 1.81168 1.29178 1.25661 0.83471 0.99252 0.81541 1.87336 1.22496 1.85524 1.26962 0.92965 0.93112 0.93581 0.92808 0.92310 0.87362 0.92824 0.91774 0.89460 0.88541 0.75369 0.83437 0.83923 0.83234 0.89709 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.13 -2.63 6.22 -26.73 -0.17 -2.79 16 3 C 0.11 2.60 4.90 -4.04 -0.02 2.58 16 4 N -0.42 -10.15 2.56 -114.81 -0.29 -10.45 16 5 C -0.35 -8.50 8.70 -14.93 -0.13 -8.63 16 6 H 0.09 2.19 6.97 -52.49 -0.37 1.83 16 7 C 0.05 1.16 4.92 -17.47 -0.09 1.07 16 8 N -0.85 -21.55 11.34 55.50 0.63 -20.92 16 9 Si 0.91 18.84 29.61 -169.99 -5.03 13.80 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 13 C 0.46 10.39 7.67 -10.99 -0.08 10.30 16 14 O -0.61 -14.46 15.34 5.55 0.09 -14.37 16 15 C 0.12 2.37 4.81 -5.20 -0.02 2.34 16 16 N -0.70 -12.13 5.48 -62.50 -0.34 -12.47 16 17 C 0.56 9.40 7.76 -12.43 -0.10 9.30 16 18 O -0.54 -10.72 16.34 5.29 0.09 -10.64 16 19 C -0.12 -1.60 5.87 -104.97 -0.62 -2.22 16 20 C -0.07 -0.80 9.53 -39.21 -0.37 -1.17 16 21 C -0.11 -1.10 10.04 -39.52 -0.40 -1.50 16 22 C 0.05 0.60 7.16 -38.86 -0.28 0.32 16 23 C 0.02 0.24 7.14 -39.13 -0.28 -0.04 16 24 C -0.04 -0.55 9.60 -39.07 -0.38 -0.93 16 25 O -0.31 -3.44 11.41 -45.79 -0.52 -3.97 16 26 C 0.21 1.62 8.88 101.05 0.90 2.52 16 27 O -0.31 -3.20 11.39 -45.24 -0.52 -3.71 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.11 2.62 5.35 -51.93 -0.28 2.34 16 34 H 0.05 1.26 7.59 -51.93 -0.39 0.87 16 35 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 36 H 0.09 1.72 7.64 -51.93 -0.40 1.32 16 37 H 0.10 2.02 8.10 -51.93 -0.42 1.60 16 38 H 0.41 6.53 5.46 -40.82 -0.22 6.31 16 39 H 0.15 1.47 6.39 -52.48 -0.34 1.14 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.15 1.99 7.64 -52.49 -0.40 1.59 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -29.87 366.40 -7.38 -37.25 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.33 Total: 10.73 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.66 Total: 9.23 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.01 Total: -43.85 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.87 Total: -32.69 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.87 -7.38 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359270141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.302 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds