Wall clock time and date at job start Tue Mar 31 2020 17:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 N 1.46501 * 109.46977 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99716 * 264.54068 * 4 3 2 6 6 H 1.08000 * 119.99625 * 146.01505 * 5 4 3 7 7 C 1.38944 * 120.00003 * 326.01324 * 5 4 3 8 8 N 1.31403 * 120.00143 * 337.80867 * 7 5 4 9 9 Si 1.86804 * 119.99671 * 157.80987 * 7 5 4 10 10 H 1.48502 * 109.47171 * 90.00206 * 9 7 5 11 11 H 1.48508 * 109.46651 * 209.99940 * 9 7 5 12 12 H 1.48495 * 109.47041 * 329.99871 * 9 7 5 13 13 C 1.34771 * 120.00189 * 84.54195 * 4 3 2 14 14 O 1.21294 * 120.00198 * 359.97438 * 13 4 3 15 15 C 1.50696 * 120.00312 * 179.97438 * 13 4 3 16 16 N 1.46497 * 109.47658 * 179.97438 * 15 13 4 17 17 C 1.34774 * 120.00215 * 179.97438 * 16 15 13 18 18 O 1.21581 * 120.00177 * 0.02562 * 17 16 15 19 19 C 1.47615 * 119.99871 * 180.02562 * 17 16 15 20 20 C 1.39697 * 120.08437 * 0.02562 * 19 17 16 21 21 C 1.37765 * 120.00928 * 179.73358 * 20 19 17 22 22 C 1.38859 * 120.21444 * 0.47714 * 21 20 19 23 23 C 1.39547 * 120.05732 * 359.52471 * 22 21 20 24 24 C 1.38129 * 119.97758 * 0.23682 * 23 22 21 25 25 O 1.36531 * 108.59862 * 180.23648 * 23 22 21 26 26 C 1.43983 * 105.44971 * 342.69140 * 25 23 22 27 27 O 1.36363 * 131.35316 * 179.83107 * 22 21 20 28 28 H 1.08999 * 109.46766 * 299.99725 * 1 2 3 29 29 H 1.08993 * 109.47290 * 59.99619 * 1 2 3 30 30 H 1.08996 * 109.46793 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46766 * 240.00274 * 2 1 3 32 32 H 1.08993 * 109.47290 * 120.00381 * 2 1 3 33 33 H 1.08999 * 109.47091 * 60.00473 * 3 2 1 34 34 H 1.09002 * 109.47176 * 300.00468 * 3 2 1 35 35 H 0.97010 * 120.00503 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47007 * 59.99881 * 15 13 4 37 37 H 1.09004 * 109.47224 * 300.00263 * 15 13 4 38 38 H 0.97001 * 120.00004 * 0.02562 * 16 15 13 39 39 H 1.08010 * 119.99459 * 359.97406 * 20 19 17 40 40 H 1.07995 * 119.89739 * 180.30870 * 21 20 19 41 41 H 1.07996 * 120.04648 * 180.02562 * 24 23 22 42 42 H 1.09003 * 110.56337 * 268.61775 * 26 25 23 43 43 H 1.08995 * 110.56601 * 145.75844 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1910 1.5552 1.1811 6 1 5.1327 1.0423 1.3099 7 6 3.6747 2.3294 2.2129 8 7 2.8038 3.2777 1.9504 9 14 4.2188 2.0220 3.9734 10 1 5.4093 2.8564 4.2764 11 1 3.1155 2.3780 4.9016 12 1 4.5638 0.5875 4.1415 13 6 4.1785 1.3316 -1.1628 14 8 3.5716 1.2314 -2.2082 15 6 5.6854 1.3322 -1.1635 16 7 6.1733 1.2003 -2.5385 17 6 7.4982 1.1777 -2.7843 18 8 8.2887 1.2664 -1.8648 19 6 7.9897 1.0454 -4.1699 20 6 7.0830 0.9439 -5.2278 21 6 7.5434 0.8260 -6.5209 22 6 8.9079 0.7975 -6.7770 23 6 9.8188 0.8984 -5.7247 24 6 9.3629 1.0218 -4.4266 25 8 11.0833 0.8504 -6.2373 26 6 10.9393 0.3092 -7.5637 27 8 9.6033 0.6868 -7.9448 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 2.4430 3.8180 2.6709 36 1 6.0493 0.4952 -0.5674 37 1 6.0486 2.2672 -0.7368 38 1 5.5427 1.1299 -3.2722 39 1 6.0209 0.9618 -5.0323 40 1 6.8409 0.7527 -7.3378 41 1 10.0669 1.1003 -3.6115 42 1 11.0404 -0.7760 -7.5474 43 1 11.6701 0.7528 -8.2397 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359270141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:21 Heat of formation + Delta-G solvation = -120.350464 kcal Electronic energy + Delta-G solvation = -27981.301800 eV Core-core repulsion = 23799.222094 eV Total energy + Delta-G solvation = -4182.079705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.26360 -41.27975 -40.32335 -38.39450 -37.40728 -37.19185 -35.53383 -34.51253 -33.27866 -31.93243 -31.53489 -29.16597 -27.49567 -26.86208 -25.98661 -24.68714 -23.95927 -22.48313 -21.83562 -21.14416 -19.99178 -19.04243 -18.76637 -18.43231 -17.79398 -17.61112 -16.98263 -16.78201 -16.71484 -16.28467 -16.01073 -15.58815 -15.56449 -15.36493 -15.04689 -14.97341 -14.76203 -14.34109 -14.15576 -14.07133 -13.95118 -13.81805 -13.44586 -13.30187 -13.17984 -12.91834 -12.59924 -12.38208 -12.31878 -12.07125 -11.98424 -11.94391 -11.50995 -11.25642 -11.02730 -10.49915 -10.28205 -10.05727 -9.54064 -9.25117 -8.35517 -6.08824 -0.47455 0.06245 1.40018 1.47857 1.49614 1.60156 1.71134 1.89033 1.97496 2.31328 2.47005 2.58365 2.95685 3.03848 3.27726 3.58424 3.76702 3.91319 3.93930 4.03616 4.09629 4.21978 4.24766 4.35031 4.42811 4.48045 4.57548 4.60050 4.80710 4.83107 4.87138 4.99744 5.03111 5.08127 5.11361 5.12960 5.23747 5.24825 5.38379 5.44498 5.58581 5.93578 5.95939 6.35701 6.46050 7.04872 7.06697 7.48453 7.89734 8.66227 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.002460 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.991664 B =11377.698420 C =12579.390068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.438 5.438 5 C -0.366 4.366 6 H 0.099 0.901 7 C 0.010 3.990 8 N -0.883 5.883 9 Si 0.978 3.022 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.261 1.261 13 C 0.450 3.550 14 O -0.622 6.622 15 C 0.131 3.869 16 N -0.699 5.699 17 C 0.561 3.439 18 O -0.576 6.576 19 C -0.133 4.133 20 C -0.061 4.061 21 C -0.100 4.100 22 C 0.057 3.943 23 C 0.012 3.988 24 C -0.052 4.052 25 O -0.322 6.322 26 C 0.203 3.797 27 O -0.313 6.313 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.275 0.725 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.415 0.585 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.217 -6.676 -14.813 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.008 4.008 4 N -0.154 5.154 5 C -0.493 4.493 6 H 0.117 0.883 7 C -0.194 4.194 8 N -0.519 5.519 9 Si 0.801 3.199 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.185 1.185 13 C 0.239 3.761 14 O -0.511 6.511 15 C 0.004 3.996 16 N -0.353 5.353 17 C 0.349 3.651 18 O -0.457 6.457 19 C -0.137 4.137 20 C -0.079 4.079 21 C -0.118 4.118 22 C 0.012 3.988 23 C -0.033 4.033 24 C -0.071 4.071 25 O -0.239 6.239 26 C 0.093 3.907 27 O -0.229 6.229 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.255 0.745 39 H 0.179 0.821 40 H 0.191 0.809 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 8.460 -6.415 -14.674 18.112 hybrid contribution 0.174 0.184 0.715 0.759 sum 8.634 -6.231 -13.959 17.556 Atomic orbital electron populations 1.21609 0.93650 1.02342 1.01786 1.21725 0.97251 0.96692 1.00674 1.21494 0.80618 0.96554 1.02178 1.43663 1.05621 1.61063 1.05089 1.19775 1.08226 1.30374 0.90916 0.88343 1.26108 0.96640 0.92725 1.03923 1.70020 1.30690 1.16572 1.34611 0.85171 0.77999 0.79310 0.77379 1.20002 1.20270 1.18515 1.20565 0.89813 0.81855 0.83837 1.90466 1.70420 1.58229 1.31943 1.20676 0.91788 1.03508 0.83654 1.45619 1.06918 1.73124 1.09664 1.18301 0.81780 0.76114 0.88868 1.90763 1.56056 1.51981 1.46909 1.19379 0.93336 1.08489 0.92474 1.21366 1.00587 0.95458 0.90527 1.20283 0.90906 1.02620 0.97971 1.20294 0.94246 1.00596 0.83688 1.19578 0.83783 1.05813 0.94090 1.19962 0.94759 0.98807 0.93617 1.87382 1.24130 1.81554 1.30823 1.26243 0.82948 1.01011 0.80529 1.87329 1.23566 1.85439 1.26523 0.92657 0.92746 0.90972 0.93679 0.92697 0.88777 0.94453 0.91528 0.89301 0.89832 0.74527 0.82100 0.80888 0.84308 0.87367 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.91 71.98 0.71 -3.46 16 2 C -0.12 -4.84 6.22 30.60 0.19 -4.65 16 3 C 0.11 5.31 4.90 86.38 0.42 5.73 16 4 N -0.44 -21.30 2.56 -635.54 -1.63 -22.93 16 5 C -0.37 -17.93 8.70 84.04 0.73 -17.20 16 6 H 0.10 4.64 6.97 -2.91 -0.02 4.62 16 7 C 0.01 0.51 4.92 84.93 0.42 0.92 16 8 N -0.88 -45.14 11.34 21.66 0.25 -44.89 16 9 Si 0.98 38.49 29.61 68.60 2.03 40.53 16 10 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 13 C 0.45 20.85 7.67 87.66 0.67 21.52 16 14 O -0.62 -29.71 15.34 -3.07 -0.05 -29.76 16 15 C 0.13 5.34 4.81 85.63 0.41 5.75 16 16 N -0.70 -24.37 5.48 -469.93 -2.57 -26.95 16 17 C 0.56 19.27 7.76 86.72 0.67 19.94 16 18 O -0.58 -23.66 16.34 -3.97 -0.06 -23.73 16 19 C -0.13 -3.64 5.87 -20.09 -0.12 -3.76 16 20 C -0.06 -1.28 9.53 22.51 0.21 -1.07 16 21 C -0.10 -1.80 10.04 22.31 0.22 -1.58 16 22 C 0.06 1.19 7.16 22.73 0.16 1.36 16 23 C 0.01 0.28 7.14 22.56 0.16 0.44 16 24 C -0.05 -1.39 9.60 22.60 0.22 -1.17 16 25 O -0.32 -6.81 11.41 -76.42 -0.87 -7.69 16 26 C 0.20 2.55 8.88 113.37 1.01 3.56 16 27 O -0.31 -5.66 11.39 -74.45 -0.85 -6.51 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 4.64 5.35 -2.39 -0.01 4.63 16 34 H 0.04 1.80 7.59 -2.39 -0.02 1.78 16 35 H 0.27 13.20 8.31 -92.70 -0.77 12.43 16 36 H 0.09 3.58 7.64 -2.38 -0.02 3.57 16 37 H 0.08 3.63 8.10 -2.38 -0.02 3.61 16 38 H 0.41 13.19 5.46 -92.71 -0.51 12.69 16 39 H 0.16 2.92 6.39 -2.91 -0.02 2.90 16 40 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.14 3.91 7.64 -2.91 -0.02 3.88 16 42 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.96 366.40 2.90 -62.06 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.56 Total: 33.53 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 6.10 Total: 26.33 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.95 Total: -94.77 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -1.83 Total: -67.68 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.53 kcal Total: -64.96 2.90 -62.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359270141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.288 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds