Wall clock time and date at job start Tue Mar 31 2020 17:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 C 1.50695 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.37897 * 120.27237 * 95.01990 * 4 3 2 6 6 C 1.39664 * 118.77346 * 180.02562 * 5 4 3 7 7 O 1.22157 * 120.21528 * 180.02562 * 6 5 4 8 8 N 1.36271 * 119.56915 * 359.95721 * 6 5 4 9 9 N 1.38940 * 127.66734 * 179.74739 * 8 6 5 10 10 C 1.28167 * 116.83790 * 179.82193 * 9 8 6 11 11 N 1.38395 * 124.95758 * 180.19754 * 10 9 8 12 12 C 1.46495 * 120.00415 * 180.25879 * 11 10 9 13 13 C 1.52998 * 109.47014 * 185.42017 * 12 11 10 14 14 C 1.50706 * 115.55282 * 39.68938 * 13 12 11 15 15 H 1.07998 * 119.99338 * 264.53566 * 14 13 12 16 16 C 1.37875 * 120.00281 * 84.53009 * 14 13 12 17 17 N 1.31514 * 119.99609 * 353.28124 * 16 14 13 18 18 Si 1.86794 * 120.00191 * 173.27843 * 16 14 13 19 19 H 1.48508 * 109.46906 * 60.00028 * 18 16 14 20 20 H 1.48492 * 109.47260 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47278 * 300.00458 * 18 16 14 22 22 C 1.52996 * 117.49916 * 253.97589 * 13 12 11 23 23 C 1.53003 * 60.00350 * 252.50991 * 22 13 12 24 24 S 1.75691 * 110.09319 * 0.44019 * 10 9 8 25 25 C 1.35064 * 118.93176 * 0.04329 * 8 6 5 26 26 N 1.32430 * 120.27890 * 274.99966 * 4 3 2 27 27 H 1.09002 * 109.46769 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47544 * 299.99835 * 1 2 3 29 29 H 1.09002 * 109.47218 * 60.00574 * 1 2 3 30 30 H 1.08989 * 109.47333 * 239.99860 * 2 1 3 31 31 H 1.09002 * 109.47218 * 119.99425 * 2 1 3 32 32 H 1.09002 * 109.47233 * 59.99479 * 3 2 1 33 33 H 1.09007 * 109.47064 * 300.00021 * 3 2 1 34 34 H 1.07991 * 120.61470 * 359.97438 * 5 4 3 35 35 H 0.97000 * 119.99254 * 0.25352 * 11 10 9 36 36 H 1.08998 * 109.46971 * 305.41911 * 12 11 10 37 37 H 1.09000 * 109.47336 * 65.41961 * 12 11 10 38 38 H 0.97006 * 119.99999 * 185.04505 * 17 16 14 39 39 H 1.08996 * 117.50349 * 0.02562 * 22 13 12 40 40 H 1.09004 * 117.49943 * 145.02526 * 22 13 12 41 41 H 1.08991 * 117.49733 * 252.51083 * 23 22 13 42 42 H 1.09000 * 117.51447 * 107.47320 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2426 1.5467 -1.1855 6 6 5.6387 1.5430 -1.1485 7 8 6.2813 1.6343 -2.1834 8 7 6.2794 1.4384 0.0496 9 7 7.6493 1.4130 0.2805 10 6 8.0287 1.3112 1.5005 11 7 9.3468 1.2744 1.9206 12 6 9.6580 1.1499 3.3466 13 6 11.1696 1.2687 3.5510 14 6 11.8615 2.3019 2.6996 15 1 12.3271 2.0112 1.7695 16 6 11.8998 3.6183 3.1079 17 7 11.2224 3.9974 4.1694 18 14 12.9140 4.8631 2.1533 19 1 12.4202 4.9356 0.7546 20 1 12.7893 6.1976 2.7925 21 1 14.3391 4.4456 2.1541 22 6 11.9414 -0.0118 3.8755 23 6 11.7118 1.0392 4.9633 24 16 6.6313 1.2181 2.5614 25 6 5.5434 1.3394 1.1777 26 7 4.2142 1.3432 1.1402 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.7175 1.6287 -2.1256 35 1 10.0646 1.3311 1.2706 36 1 9.1532 1.9423 3.8992 37 1 9.3174 0.1801 3.7095 38 1 11.1898 4.9355 4.4145 39 1 11.3725 -0.9391 3.9429 40 1 12.9499 -0.1073 3.4729 41 1 12.5690 1.6352 5.2763 42 1 10.9914 0.8039 5.7468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362367179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:12 Heat of formation + Delta-G solvation = 83.597760 kcal Electronic energy + Delta-G solvation = -25492.079001 eV Core-core repulsion = 21793.888777 eV Total energy + Delta-G solvation = -3698.190225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83280 -38.53632 -37.63426 -37.37839 -35.49118 -34.28746 -32.22823 -31.33018 -30.92753 -27.83119 -26.26290 -25.62870 -25.37726 -22.98752 -22.26277 -21.36803 -21.34848 -19.89021 -19.10107 -18.45892 -17.74761 -16.66716 -16.41257 -15.94822 -15.35587 -15.03283 -14.89600 -14.69393 -14.44340 -14.40924 -13.86697 -13.75190 -13.46304 -13.23681 -12.91130 -12.75059 -12.47063 -12.37743 -11.88551 -11.86431 -11.56462 -11.21913 -11.09082 -10.99323 -10.75289 -10.68970 -10.67013 -10.40487 -10.13972 -9.89570 -9.77597 -9.64812 -9.21383 -8.72802 -8.53615 -8.25501 -7.76641 -6.32108 -4.42173 0.21208 0.25331 1.01175 1.55023 1.73164 1.94706 3.17278 3.22895 3.26261 3.46162 3.51658 3.90489 4.19612 4.37148 4.55060 4.78537 4.79335 4.96092 4.99543 5.08656 5.23310 5.29891 5.45479 5.52307 5.54808 5.58934 5.72588 5.86606 5.91619 5.98706 6.00923 6.04402 6.14988 6.31931 6.47232 6.50578 6.65794 6.81022 6.99501 7.19916 7.37482 7.47612 7.59432 7.76145 8.03105 8.08719 8.60571 9.28005 10.75288 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.002837 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.108830 B = 9867.725435 C =10534.104872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.068 4.068 4 C 0.207 3.793 5 C -0.304 4.304 6 C 0.538 3.462 7 O -0.521 6.521 8 N -0.330 5.330 9 N -0.339 5.339 10 C 0.348 3.652 11 N -0.627 5.627 12 C 0.152 3.848 13 C 0.026 3.974 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.080 3.920 17 N -0.870 5.870 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.206 4.206 23 C -0.146 4.146 24 S 0.176 5.824 25 C 0.288 3.712 26 N -0.513 5.513 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.428 0.572 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.265 0.735 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.171 -6.794 -0.754 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.106 4.106 4 C 0.077 3.923 5 C -0.334 4.334 6 C 0.340 3.660 7 O -0.396 6.396 8 N -0.137 5.137 9 N -0.173 5.173 10 C -0.040 4.040 11 N -0.268 5.268 12 C 0.029 3.971 13 C 0.026 3.974 14 C -0.547 4.547 15 H 0.082 0.918 16 C -0.125 4.125 17 N -0.505 5.505 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.244 4.244 23 C -0.184 4.184 24 S 0.411 5.589 25 C -0.084 4.084 26 N -0.243 5.243 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.180 0.820 35 H 0.271 0.729 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.937 -6.680 -0.049 17.280 hybrid contribution 1.146 1.048 -1.940 2.485 sum -14.791 -5.632 -1.989 15.951 Atomic orbital electron populations 1.21763 0.95141 1.01900 1.02007 1.21475 0.96049 0.95144 1.02968 1.20631 0.86889 0.98749 1.04315 1.21362 0.96786 0.87182 0.87002 1.22516 0.90566 1.19325 1.01039 1.17163 0.88431 0.79765 0.80643 1.90981 1.67369 1.51300 1.29913 1.49219 1.02318 1.53190 1.08948 1.74633 0.90891 1.36869 1.14928 1.24586 0.93708 0.95039 0.90646 1.44490 0.98746 1.72852 1.10662 1.21433 0.99823 0.99094 0.76738 1.18857 0.87879 0.94109 0.96605 1.20270 1.36370 0.91553 1.06522 0.91816 1.24967 0.94733 0.98432 0.94415 1.69924 1.39279 1.16805 1.24512 0.86669 0.81037 0.80280 0.80269 1.19937 1.21116 1.19942 1.23130 1.01759 0.92895 1.06577 1.22548 1.02800 1.01166 0.91878 1.85990 0.92045 1.80727 1.00173 1.26695 0.94308 0.96062 0.91313 1.67879 1.00892 1.26208 1.29313 0.92517 0.92452 0.92564 0.91598 0.91196 0.89213 0.89332 0.81986 0.72889 0.90406 0.93350 0.92480 0.91292 0.89972 0.89505 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.91 5.92 -26.73 -0.16 -1.06 16 3 C -0.07 -0.57 5.56 -27.89 -0.16 -0.73 16 4 C 0.21 2.61 6.07 -82.46 -0.50 2.11 16 5 C -0.30 -4.33 9.70 -39.17 -0.38 -4.71 16 6 C 0.54 10.11 7.65 -15.05 -0.12 10.00 16 7 O -0.52 -11.60 17.82 4.77 0.09 -11.51 16 8 N -0.33 -6.11 3.67 -14.67 -0.05 -6.16 16 9 N -0.34 -6.62 11.75 30.42 0.36 -6.26 16 10 C 0.35 6.03 8.41 -89.11 -0.75 5.28 16 11 N -0.63 -11.14 5.43 -61.43 -0.33 -11.48 16 12 C 0.15 2.72 5.66 -4.05 -0.02 2.69 16 13 C 0.03 0.54 1.69 -155.66 -0.26 0.27 16 14 C -0.51 -11.85 7.50 -34.44 -0.26 -12.11 16 15 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 16 C 0.08 1.96 5.39 -17.82 -0.10 1.86 16 17 N -0.87 -21.86 12.96 55.43 0.72 -21.14 16 18 Si 0.89 19.68 29.55 -169.99 -5.02 14.65 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.21 -3.72 9.88 -26.73 -0.26 -3.99 16 23 C -0.15 -2.86 9.50 -26.73 -0.25 -3.11 16 24 S 0.18 2.51 22.50 -107.50 -2.42 0.09 16 25 C 0.29 4.59 8.38 -88.25 -0.74 3.85 16 26 N -0.51 -7.36 10.36 -9.10 -0.09 -7.46 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.51 8.14 -51.94 -0.42 0.09 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.43 7.97 7.68 -40.82 -0.31 7.66 16 36 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 37 H 0.05 0.74 7.95 -51.93 -0.41 0.33 16 38 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 39 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -28.53 373.92 -10.47 -39.01 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.76 Total: 4.80 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.59 Total: -0.17 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.59 Total: -52.50 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.42 Total: 0.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.53 -10.47 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362367179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.603 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds