Wall clock time and date at job start Tue Mar 31 2020 17:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 C 1.50695 * 109.47280 * 179.97438 * 3 2 1 5 5 C 1.37897 * 120.27237 * 95.01990 * 4 3 2 6 6 C 1.39664 * 118.77346 * 180.02562 * 5 4 3 7 7 O 1.22157 * 120.21528 * 180.02562 * 6 5 4 8 8 N 1.36271 * 119.56915 * 359.95721 * 6 5 4 9 9 N 1.38940 * 127.66734 * 179.74739 * 8 6 5 10 10 C 1.28167 * 116.83790 * 179.82193 * 9 8 6 11 11 N 1.38395 * 124.95758 * 180.19754 * 10 9 8 12 12 C 1.46495 * 120.00415 * 180.25879 * 11 10 9 13 13 C 1.52998 * 109.47014 * 185.42017 * 12 11 10 14 14 C 1.50706 * 115.55282 * 39.68938 * 13 12 11 15 15 H 1.07998 * 119.99338 * 264.53566 * 14 13 12 16 16 C 1.37875 * 120.00281 * 84.53009 * 14 13 12 17 17 N 1.31514 * 119.99609 * 353.28124 * 16 14 13 18 18 Si 1.86794 * 120.00191 * 173.27843 * 16 14 13 19 19 H 1.48508 * 109.46906 * 60.00028 * 18 16 14 20 20 H 1.48492 * 109.47260 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47278 * 300.00458 * 18 16 14 22 22 C 1.52996 * 117.49916 * 253.97589 * 13 12 11 23 23 C 1.53003 * 60.00350 * 252.50991 * 22 13 12 24 24 S 1.75691 * 110.09319 * 0.44019 * 10 9 8 25 25 C 1.35064 * 118.93176 * 0.04329 * 8 6 5 26 26 N 1.32430 * 120.27890 * 274.99966 * 4 3 2 27 27 H 1.09002 * 109.46769 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47544 * 299.99835 * 1 2 3 29 29 H 1.09002 * 109.47218 * 60.00574 * 1 2 3 30 30 H 1.08989 * 109.47333 * 239.99860 * 2 1 3 31 31 H 1.09002 * 109.47218 * 119.99425 * 2 1 3 32 32 H 1.09002 * 109.47233 * 59.99479 * 3 2 1 33 33 H 1.09007 * 109.47064 * 300.00021 * 3 2 1 34 34 H 1.07991 * 120.61470 * 359.97438 * 5 4 3 35 35 H 0.97000 * 119.99254 * 0.25352 * 11 10 9 36 36 H 1.08998 * 109.46971 * 305.41911 * 12 11 10 37 37 H 1.09000 * 109.47336 * 65.41961 * 12 11 10 38 38 H 0.97006 * 119.99999 * 185.04505 * 17 16 14 39 39 H 1.08996 * 117.50349 * 0.02562 * 22 13 12 40 40 H 1.09004 * 117.49943 * 145.02526 * 22 13 12 41 41 H 1.08991 * 117.49733 * 252.51083 * 23 22 13 42 42 H 1.09000 * 117.51447 * 107.47320 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2426 1.5467 -1.1855 6 6 5.6387 1.5430 -1.1485 7 8 6.2813 1.6343 -2.1834 8 7 6.2794 1.4384 0.0496 9 7 7.6493 1.4130 0.2805 10 6 8.0287 1.3112 1.5005 11 7 9.3468 1.2744 1.9206 12 6 9.6580 1.1499 3.3466 13 6 11.1696 1.2687 3.5510 14 6 11.8615 2.3019 2.6996 15 1 12.3271 2.0112 1.7695 16 6 11.8998 3.6183 3.1079 17 7 11.2224 3.9974 4.1694 18 14 12.9140 4.8631 2.1533 19 1 12.4202 4.9356 0.7546 20 1 12.7893 6.1976 2.7925 21 1 14.3391 4.4456 2.1541 22 6 11.9414 -0.0118 3.8755 23 6 11.7118 1.0392 4.9633 24 16 6.6313 1.2181 2.5614 25 6 5.5434 1.3394 1.1777 26 7 4.2142 1.3432 1.1402 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 3.7175 1.6287 -2.1256 35 1 10.0646 1.3311 1.2706 36 1 9.1532 1.9423 3.8992 37 1 9.3174 0.1801 3.7095 38 1 11.1898 4.9355 4.4145 39 1 11.3725 -0.9391 3.9429 40 1 12.9499 -0.1073 3.4729 41 1 12.5690 1.6352 5.2763 42 1 10.9914 0.8039 5.7468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362367179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:11 Heat of formation + Delta-G solvation = 68.452970 kcal Electronic energy + Delta-G solvation = -25492.735729 eV Core-core repulsion = 21793.888777 eV Total energy + Delta-G solvation = -3698.846952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.12359 -39.87516 -38.98041 -38.80157 -36.67987 -35.27708 -34.04580 -32.62412 -32.06057 -28.79212 -27.78986 -27.01878 -26.76898 -24.02595 -23.56699 -22.83950 -22.12715 -21.42764 -20.48402 -19.72089 -19.01564 -18.05897 -18.00281 -17.25611 -16.74159 -16.45463 -16.19689 -15.84969 -15.75347 -15.50400 -15.06933 -14.78205 -14.71977 -14.63665 -14.27077 -14.00431 -13.60353 -13.57225 -13.01201 -12.94169 -12.89760 -12.67281 -12.46253 -12.26655 -11.99949 -11.98608 -11.75190 -11.57191 -11.51275 -11.44681 -11.03114 -10.90355 -10.81333 -10.49369 -10.08453 -9.56371 -9.10558 -8.17941 -6.28184 -0.99042 -0.95411 -0.26564 0.21632 0.40382 0.66846 1.37540 1.42000 1.45165 2.12118 2.26993 2.37599 2.83376 3.10202 3.16644 3.43982 3.51906 4.04152 4.10791 4.16466 4.20490 4.32223 4.44039 4.46290 4.56372 4.63586 4.82119 4.83202 4.84676 4.98301 5.04233 5.06186 5.19696 5.23147 5.31620 5.33759 5.36867 5.52480 5.52546 5.67588 5.72602 5.97698 6.25008 6.30128 6.38143 6.69195 6.77881 7.42142 8.88344 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.002837 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.108830 B = 9867.725435 C =10534.104872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.064 4.064 4 C 0.218 3.782 5 C -0.303 4.303 6 C 0.517 3.483 7 O -0.575 6.575 8 N -0.339 5.339 9 N -0.380 5.380 10 C 0.340 3.660 11 N -0.632 5.632 12 C 0.163 3.837 13 C 0.000 4.000 14 C -0.510 4.510 15 H 0.055 0.945 16 C 0.043 3.957 17 N -0.892 5.892 18 Si 0.930 3.070 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.273 1.273 22 C -0.183 4.183 23 C -0.150 4.150 24 S 0.243 5.757 25 C 0.268 3.732 26 N -0.504 5.504 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.188 0.812 35 H 0.422 0.578 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.261 0.739 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 -7.856 0.078 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.102 4.102 4 C 0.087 3.913 5 C -0.333 4.333 6 C 0.323 3.677 7 O -0.455 6.455 8 N -0.146 5.146 9 N -0.215 5.215 10 C -0.047 4.047 11 N -0.271 5.271 12 C 0.040 3.960 13 C -0.001 4.001 14 C -0.548 4.548 15 H 0.073 0.927 16 C -0.160 4.160 17 N -0.528 5.528 18 Si 0.758 3.242 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.198 1.198 22 C -0.220 4.220 23 C -0.188 4.188 24 S 0.478 5.522 25 C -0.103 4.103 26 N -0.234 5.234 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.205 0.795 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.406 -7.752 0.830 19.989 hybrid contribution 1.832 1.327 -2.158 3.126 sum -16.574 -6.425 -1.328 17.825 Atomic orbital electron populations 1.21737 0.93543 1.02414 1.02760 1.21461 0.97340 0.94223 1.02386 1.20844 0.83423 0.99760 1.06195 1.22045 0.98715 0.84781 0.85757 1.22747 0.88464 1.19128 1.02923 1.17969 0.89789 0.79801 0.80186 1.90935 1.68491 1.54567 1.31510 1.49201 1.02153 1.53493 1.09707 1.74579 0.92154 1.38000 1.16737 1.24659 0.94297 0.94372 0.91403 1.44433 0.98953 1.73182 1.10502 1.21315 0.97878 1.00305 0.76544 1.18946 0.89359 0.95013 0.96763 1.20512 1.35642 0.92252 1.06346 0.92716 1.25417 0.95655 0.99736 0.95165 1.69983 1.40703 1.16550 1.25571 0.86052 0.80207 0.79033 0.78930 1.20789 1.21399 1.19824 1.23142 1.01445 0.93133 1.04288 1.22489 1.02353 1.01706 0.92252 1.85706 0.89019 1.79825 0.97603 1.27199 0.95023 0.96701 0.91425 1.68031 1.00047 1.25170 1.30111 0.92196 0.91971 0.91555 0.91792 0.92297 0.88073 0.86751 0.79529 0.73721 0.91782 0.90054 0.92959 0.88185 0.90558 0.92125 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 3 C -0.06 -0.87 5.56 29.85 0.17 -0.70 16 4 C 0.22 5.00 6.07 42.39 0.26 5.26 16 5 C -0.30 -8.29 9.70 22.53 0.22 -8.07 16 6 C 0.52 19.74 7.65 84.35 0.64 20.38 16 7 O -0.58 -26.63 17.82 -5.83 -0.10 -26.74 16 8 N -0.34 -12.64 3.67 -317.50 -1.17 -13.81 16 9 N -0.38 -15.10 11.75 -57.63 -0.68 -15.78 16 10 C 0.34 11.67 8.41 179.82 1.51 13.19 16 11 N -0.63 -22.20 5.43 -348.26 -1.89 -24.09 16 12 C 0.16 5.55 5.66 86.38 0.49 6.04 16 13 C 0.00 0.00 1.69 -52.93 -0.09 -0.09 16 14 C -0.51 -23.80 7.50 25.60 0.19 -23.61 16 15 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 16 C 0.04 2.12 5.39 84.65 0.46 2.57 16 17 N -0.89 -45.17 12.96 21.45 0.28 -44.89 16 18 Si 0.93 41.00 29.55 68.60 2.03 43.03 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C -0.18 -6.21 9.88 30.59 0.30 -5.91 16 23 C -0.15 -5.68 9.50 30.60 0.29 -5.39 16 24 S 0.24 6.56 22.50 -56.49 -1.27 5.29 16 25 C 0.27 8.24 8.38 179.52 1.50 9.74 16 26 N -0.50 -13.49 10.36 -182.70 -1.89 -15.38 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.03 8.06 -2.38 -0.02 1.01 16 34 H 0.19 4.01 8.06 -2.92 -0.02 3.99 16 35 H 0.42 15.89 7.68 -92.71 -0.71 15.18 16 36 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 37 H 0.08 2.23 7.95 -2.39 -0.02 2.22 16 38 H 0.26 13.02 8.32 -92.70 -0.77 12.25 16 39 H 0.10 2.79 8.08 -2.39 -0.02 2.77 16 40 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 41 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -63.66 373.92 2.48 -61.18 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.34 Total: 19.61 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 6.84 Total: 11.59 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -5.35 Total: -113.95 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.10 Total: -26.74 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -1.27 Total: 5.29 kcal Total: -63.66 2.48 -61.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362367179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.635 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds